BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3694.p         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776466.1| intracellular protease/amidase [Herbaspirill...   360   6e-98
ref|YP_370309.1| peptidase C56, PfpI [Burkholderia sp. 383] >gi|...   303   8e-81
ref|ZP_02890701.1| intracellular protease, PfpI family [Burkhold...   303   1e-80
ref|YP_002230017.1| family C56 cysteine peptidase [Burkholderia ...   302   2e-80
ref|ZP_02377846.1| intracellular protease, PfpI family protein [...   302   2e-80

>ref|YP_003776466.1| intracellular protease/amidase [Herbaspirillum seropedicae SmR1]
 gb|ADJ64558.1| intracellular protease/amidase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 195

 Score =  360 bits (924), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 194/195 (99%), Positives = 195/195 (100%)

Query: 1   MTMAAKKILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKIKTAIHDFEGDQT 60
           MTMAAKKILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDK+KTAIHDFEGDQT
Sbjct: 1   MTMAAKKILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKVKTAIHDFEGDQT 60

Query: 61  YTEKPGHQFALNASFDDVSAAGYDALVVAGGRAPEYLRLNPKVIELVQAFAKADKPIAAV 120
           YTEKPGHQFALNASFDDVSAAGYDALVVAGGRAPEYLRLNPKVIELVQAFAKADKPIAAV
Sbjct: 61  YTEKPGHQFALNASFDDVSAAGYDALVVAGGRAPEYLRLNPKVIELVQAFAKADKPIAAV 120

Query: 121 CHGPQVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPA 180
           CHGPQVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPA
Sbjct: 121 CHGPQVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPA 180

Query: 181 WLAQFLQVLGTRIEL 195
           WLAQFLQVLGTRIEL
Sbjct: 181 WLAQFLQVLGTRIEL 195


>ref|YP_370309.1| peptidase C56, PfpI [Burkholderia sp. 383]
 gb|ABB09665.1| Peptidase C56, PfpI [Burkholderia sp. 383]
          Length = 193

 Score =  303 bits (777), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 157/193 (81%), Positives = 173/193 (89%)

Query: 3   MAAKKILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKIKTAIHDFEGDQTYT 62
           MAAKKIL LTGDFAEDYETMVPFQALQ VGH V AVCPGK+AGDKIKTAIHDFEGDQTYT
Sbjct: 1   MAAKKILFLTGDFAEDYETMVPFQALQAVGHHVDAVCPGKRAGDKIKTAIHDFEGDQTYT 60

Query: 63  EKPGHQFALNASFDDVSAAGYDALVVAGGRAPEYLRLNPKVIELVQAFAKADKPIAAVCH 122
           EKPGHQF LNA+FDDV A+ YDAL +AGGRAPEYLRL+PKVI LV+ FA+A KPIAA+CH
Sbjct: 61  EKPGHQFTLNAAFDDVDASRYDALAIAGGRAPEYLRLDPKVISLVREFAEAGKPIAAICH 120

Query: 123 GPQVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPAWL 182
             Q+LAAA V+ GK++SAYPACAPEVKLAGG++ADI VDAA+TD   VTAPAWPAHPAWL
Sbjct: 121 AAQLLAAADVIRGKRISAYPACAPEVKLAGGEYADITVDAAVTDAPFVTAPAWPAHPAWL 180

Query: 183 AQFLQVLGTRIEL 195
           AQFL +LGTRIEL
Sbjct: 181 AQFLALLGTRIEL 193


>ref|ZP_02890701.1| intracellular protease, PfpI family [Burkholderia ambifaria
           IOP40-10]
 gb|EDT03711.1| intracellular protease, PfpI family [Burkholderia ambifaria
           IOP40-10]
          Length = 193

 Score =  303 bits (775), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 158/193 (81%), Positives = 174/193 (90%)

Query: 3   MAAKKILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKIKTAIHDFEGDQTYT 62
           MAAKKIL LTGDFAEDYETMVPFQALQ VGH V AVCPGK+AGDKIKTAIHDFEGDQTYT
Sbjct: 1   MAAKKILFLTGDFAEDYETMVPFQALQAVGHHVDAVCPGKRAGDKIKTAIHDFEGDQTYT 60

Query: 63  EKPGHQFALNASFDDVSAAGYDALVVAGGRAPEYLRLNPKVIELVQAFAKADKPIAAVCH 122
           EKPGHQF LNA+FDDV A+GYDAL +AGGRAPEYLRL+ KVI LV+AFA+A KPIAA+CH
Sbjct: 61  EKPGHQFTLNATFDDVDASGYDALAIAGGRAPEYLRLDSKVIALVRAFAEAGKPIAAICH 120

Query: 123 GPQVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPAWL 182
             Q+LAAA V+ GK++SAYPACAPEVKLAGG++ADI VDAA+TD   VTAPAWPAHPAWL
Sbjct: 121 AAQLLAAADVIRGKRISAYPACAPEVKLAGGEYADIPVDAAVTDAPFVTAPAWPAHPAWL 180

Query: 183 AQFLQVLGTRIEL 195
           AQFL +LGTRIEL
Sbjct: 181 AQFLVLLGTRIEL 193


>ref|YP_002230017.1| family C56 cysteine peptidase [Burkholderia cenocepacia J2315]
 emb|CAR51169.1| cysteine peptidase, family C56 [Burkholderia cenocepacia J2315]
          Length = 193

 Score =  302 bits (774), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 158/193 (81%), Positives = 173/193 (89%)

Query: 3   MAAKKILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKIKTAIHDFEGDQTYT 62
           MAAKKIL LTGDFAEDYETMVPFQALQ VGH V AVCPGK+AGDKIKTAIHDFEGDQTYT
Sbjct: 1   MAAKKILFLTGDFAEDYETMVPFQALQAVGHHVDAVCPGKRAGDKIKTAIHDFEGDQTYT 60

Query: 63  EKPGHQFALNASFDDVSAAGYDALVVAGGRAPEYLRLNPKVIELVQAFAKADKPIAAVCH 122
           EKPGHQF LNA+FDDV AA YDAL +AGGRAPEYLRL+PKVI LV+ FA+A KPIAA+CH
Sbjct: 61  EKPGHQFTLNAAFDDVDAARYDALAIAGGRAPEYLRLDPKVISLVREFAEAGKPIAAICH 120

Query: 123 GPQVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPAWL 182
             Q+LAAA V+ GK++SAYPACAPEVKLAGG++ADI VDAA+TD   VTAPAWPAHPAWL
Sbjct: 121 AAQLLAAADVIRGKRISAYPACAPEVKLAGGEYADIPVDAAVTDAPFVTAPAWPAHPAWL 180

Query: 183 AQFLQVLGTRIEL 195
           AQFL +LGTRIEL
Sbjct: 181 AQFLALLGTRIEL 193


>ref|ZP_02377846.1| intracellular protease, PfpI family protein [Burkholderia ubonensis
           Bu]
          Length = 193

 Score =  302 bits (773), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 159/193 (82%), Positives = 173/193 (89%)

Query: 3   MAAKKILLLTGDFAEDYETMVPFQALQMVGHTVHAVCPGKKAGDKIKTAIHDFEGDQTYT 62
           MAAKKIL LTGDFAEDYETMVPFQALQ VGH V AVCPGK++GDKIKTAIHDFEGDQTYT
Sbjct: 1   MAAKKILFLTGDFAEDYETMVPFQALQAVGHHVDAVCPGKRSGDKIKTAIHDFEGDQTYT 60

Query: 63  EKPGHQFALNASFDDVSAAGYDALVVAGGRAPEYLRLNPKVIELVQAFAKADKPIAAVCH 122
           EKPGHQF LNASFDDV AA YDAL +AGGRAPEYLRL+PKVI LV+AFA A KPIAA+CH
Sbjct: 61  EKPGHQFTLNASFDDVDAARYDALAIAGGRAPEYLRLDPKVIALVRAFAAAGKPIAAICH 120

Query: 123 GPQVLAAAGVLEGKKVSAYPACAPEVKLAGGQFADIAVDAAITDGKLVTAPAWPAHPAWL 182
             Q+LAAA V+ GK++SAYPACAPEVKLAGG++ADI VDAA+TD   VTAPAWPAHPAWL
Sbjct: 121 AAQLLAAADVIRGKRISAYPACAPEVKLAGGEYADIPVDAAVTDAPFVTAPAWPAHPAWL 180

Query: 183 AQFLQVLGTRIEL 195
           AQFL +LGTRIEL
Sbjct: 181 AQFLALLGTRIEL 193