BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3693.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776465.1| LysR family transcription regulator protein ... 599 e-169 ref|YP_004753423.1| LysR family transcriptional regulator [Colli... 493 e-137 gb|ABK64105.1| putative LysR family transcriptional regulator [J... 452 e-125 emb|CAM76013.1| transcriptional regulator, LysR family [Magnetos... 371 e-101 ref|YP_004125505.1| lysr substrate-binding protein [Alicycliphil... 335 4e-90 >ref|YP_003776465.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64557.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 293/305 (96%), Positives = 301/305 (98%) Query: 1 MLDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTA 60 MLDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTA Sbjct: 1 MLDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTA 60 Query: 61 DGYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPH 120 DGYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPH Sbjct: 61 DGYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPH 120 Query: 121 ITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASHDYLARHAPIHT 180 ITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYAS DYLA+H PIHT Sbjct: 121 ITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLAQHPPIHT 180 Query: 181 MDDLAQHNFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAARSGQALAILPCF 240 MDDLAQH+FIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAA +G+ALAILPCF Sbjct: 181 MDDLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCF 240 Query: 241 LAQQSDELVPVLPEQIAITRTFWLVASSEQRHVARVSALWSYLRDCVELNRDFLMGQSRR 300 LAQQS+EL PVLP+QIAITR+FWLVASSEQRHVARVSALWSYLR+CVELNRDFLMGQSRR Sbjct: 241 LAQQSEELAPVLPQQIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLMGQSRR 300 Query: 301 MRWLE 305 MRWLE Sbjct: 301 MRWLE 305 >ref|YP_004753423.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62600.1| Transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 323 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 239/303 (78%), Positives = 267/303 (88%) Query: 1 MLDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTA 60 MLDWDNLR+FLELTRSQGLV+ AKKLGIDHSTVSRRM RFEEQVGSQLF+RNN GY LTA Sbjct: 14 MLDWDNLRVFLELTRSQGLVETAKKLGIDHSTVSRRMHRFEEQVGSQLFERNNQGYTLTA 73 Query: 61 DGYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPH 120 +G+RL+EYAE+VEST+YAA EEL GHN LSGQVRLGATEGFGTFVLAPH+AHFCAR+PH Sbjct: 74 EGHRLIEYAERVESTVYAAAEELSGHNRLLSGQVRLGATEGFGTFVLAPHLAHFCARHPH 133 Query: 121 ITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASHDYLARHAPIHT 180 ITVD+LP+PRFVNLSK EADI V+IERP SGNYVVTKL+DY+LKLYA+ YL HAPI T Sbjct: 134 ITVDLLPVPRFVNLSKREADIGVTIERPQSGNYVVTKLTDYLLKLYATRSYLETHAPIKT 193 Query: 181 MDDLAQHNFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAARSGQALAILPCF 240 + DL H FIGY+DDLVFSEELRYKD VAP AFRAFRSTSV+AQYTAARSGQ LAILPCF Sbjct: 194 LQDLNHHAFIGYVDDLVFSEELRYKDNVAPAAFRAFRSTSVIAQYTAARSGQGLAILPCF 253 Query: 241 LAQQSDELVPVLPEQIAITRTFWLVASSEQRHVARVSALWSYLRDCVELNRDFLMGQSRR 300 LAQQSD+LVPVL Q I R FWLVA++E R+VARV+ALW YLR+ +E NR FLMG+SR Sbjct: 254 LAQQSDDLVPVLDGQADIQRAFWLVAATETRNVARVAALWRYLREVIEPNRPFLMGESRH 313 Query: 301 MRW 303 M + Sbjct: 314 MTY 316 >gb|ABK64105.1| putative LysR family transcriptional regulator [Janthinobacterium lividum] Length = 305 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 216/303 (71%), Positives = 260/303 (85%) Query: 1 MLDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTA 60 MLDWDN+R+FLELTRS GLVDAAKKLGIDHSTVSRRM++FEEQVG+QLFDRN GY+LT Sbjct: 1 MLDWDNVRVFLELTRSAGLVDAAKKLGIDHSTVSRRMRKFEEQVGTQLFDRNYVGYQLTP 60 Query: 61 DGYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPH 120 +G+RL+EYAE +EST++AATEELG HN LSGQVRLGATEGFG VLAPH+A FC R PH Sbjct: 61 EGHRLMEYAETMESTVFAATEELGEHNRLLSGQVRLGATEGFGAIVLAPHLAQFCGRYPH 120 Query: 121 ITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASHDYLARHAPIHT 180 I+VD++ +PRFV+LSK EAD+++SIERPLSG YVVTKLSDY LKLYA+ YLARHAPI + Sbjct: 121 ISVDLIAVPRFVSLSKREADVAISIERPLSGPYVVTKLSDYRLKLYATPAYLARHAPITS 180 Query: 181 MDDLAQHNFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAARSGQALAILPCF 240 + LAQH IGY+DDLVFS ELRY D VAPD+ RAFRSTSV+AQY AAR+GQALAILPCF Sbjct: 181 VAQLAQHPIIGYVDDLVFSSELRYMDNVAPDSLRAFRSTSVIAQYHAARAGQALAILPCF 240 Query: 241 LAQQSDELVPVLPEQIAITRTFWLVASSEQRHVARVSALWSYLRDCVELNRDFLMGQSRR 300 +AQQS+ELVPVL I + R FW+++ SE+R++ARVSALW+YLR+ ++LN +LMG++ Sbjct: 241 VAQQSNELVPVLDGDIDLLRAFWMISPSERRNIARVSALWNYLRNAIDLNHAYLMGEATT 300 Query: 301 MRW 303 W Sbjct: 301 PSW 303 >emb|CAM76013.1| transcriptional regulator, LysR family [Magnetospirillum gryphiswaldense MSR-1] Length = 310 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 179/300 (59%), Positives = 226/300 (75%) Query: 2 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61 +DWDNL IFLEL R + L+DAA++LGID+STVSRR++RFE+++G+QLFDRNN GY LTA Sbjct: 1 MDWDNLHIFLELARGRRLMDAAERLGIDYSTVSRRIRRFEQELGTQLFDRNNQGYTLTAQ 60 Query: 62 GYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHI 121 G LVEYAE+VE+ ++ A E+L GHNS LSGQ+RL TEGFGT LA +AHFCAR+PHI Sbjct: 61 GLHLVEYAEKVEAIVHLAQEKLTGHNSALSGQIRLACTEGFGTHFLAAQLAHFCARHPHI 120 Query: 122 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASHDYLARHAPIHTM 181 T+D LP+ RFVNL K EAD+++SIERP SGNY + KL DY LKLYAS YLA PI Sbjct: 121 TLDFLPLSRFVNLPKREADMAISIERPDSGNYAIAKLCDYHLKLYASPAYLAERGPITAA 180 Query: 182 DDLAQHNFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAARSGQALAILPCFL 241 DL H FIGY+DDLVFSEELRY + + ++RST+VVAQ +A R G LA+LPCFL Sbjct: 181 SDLQNHTFIGYVDDLVFSEELRYLEQIVTADRVSYRSTNVVAQCSAVRQGTGLAVLPCFL 240 Query: 242 AQQSDELVPVLPEQIAITRTFWLVASSEQRHVARVSALWSYLRDCVELNRDFLMGQSRRM 301 A +LVPVL +Q+ R+FWLV E+ ++AR+ AL +++D E NR FL+G+SR M Sbjct: 241 ASPHADLVPVLEDQVLFKRSFWLVTPEERHNLARIKALRQFVKDVAERNRAFLLGESREM 300 >ref|YP_004125505.1| lysr substrate-binding protein [Alicycliphilus denitrificans BC] gb|ADU98617.1| LysR substrate-binding protein [Alicycliphilus denitrificans BC] Length = 308 Score = 335 bits (860), Expect = 4e-90, Method: Composition-based stats. Identities = 155/297 (52%), Positives = 222/297 (74%) Query: 2 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61 ++WDNLR+FL + R+Q +AA+++ +DHST++RR+ R E+++G+QLF+R G+ LT Sbjct: 6 INWDNLRLFLAVVRAQSAQEAARRMEVDHSTITRRLHRLEKELGAQLFERTPAGHLLTPA 65 Query: 62 GYRLVEYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHIAHFCARNPHI 121 G RL+E+ E++ES++ E++GG + L+G VRLGATEGFG+F LAPH+++FC R+P I Sbjct: 66 GQRLLEHVERMESSMVLVGEDIGGDSHMLTGHVRLGATEGFGSFFLAPHLSYFCDRHPGI 125 Query: 122 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASHDYLARHAPIHTM 181 V++L +PRF+NLS+ EAD++V+IERP V +KL+DY L+LYAS YL PI + Sbjct: 126 QVELLIVPRFINLSQREADLAVNIERPQRSGQVCSKLTDYRLRLYASRSYLQGQPPIRRL 185 Query: 182 DDLAQHNFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAARSGQALAILPCFL 241 DLA H F GY+++LVFS+ELRY ++ PDA + RSTSVVAQY A R G+ LA+LPCF+ Sbjct: 186 RDLAAHRFFGYVEELVFSQELRYLTSIMPDAPMSLRSTSVVAQYNAVREGRGLAVLPCFM 245 Query: 242 AQQSDELVPVLPEQIAITRTFWLVASSEQRHVARVSALWSYLRDCVELNRDFLMGQS 298 A Q EL PVLP ++ + RTFWL A +++R +ARV ALW YLR+ VE N+ FL+G + Sbjct: 246 AAQCAELEPVLPHEVDVLRTFWLAAPADRRELARVRALWDYLRELVECNQPFLLGDA 302