BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3689.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776461.1| nucleoside-diphosphate-sugar epimerase [Herb... 624 e-176 ref|YP_004417117.1| hypothetical protein PT7_1953 [Pusillimonas ... 444 e-123 ref|YP_004754144.1| nucleoside-diphosphate-sugar epimerase [Coll... 421 e-115 ref|ZP_04947863.1| Nucleoside-diphosphate-sugar epimerase [Burkh... 394 e-107 ref|ZP_02376505.1| NAD-dependent epimerase/dehydratase [Burkhold... 393 e-107 >ref|YP_003776461.1| nucleoside-diphosphate-sugar epimerase [Herbaspirillum seropedicae SmR1] gb|ADJ64553.1| nucleoside-diphosphate-sugar epimerase protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 624 bits (1608), Expect = e-176, Method: Composition-based stats. Identities = 318/324 (98%), Positives = 320/324 (98%) Query: 19 MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQEIKRITLLDVVPAQGFTDPRIEAVTG 78 MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQ IKRITLLDV PAQGF DPRIEAVTG Sbjct: 1 MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQAIKRITLLDVAPAQGFDDPRIEAVTG 60 Query: 79 DIADAAVIERVITPETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALGTKPR 138 DIADAAVIERVIT ETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALG+KPR Sbjct: 61 DIADAAVIERVITAETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALGSKPR 120 Query: 139 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTI 198 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTI Sbjct: 121 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTI 180 Query: 199 SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD 258 SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD Sbjct: 181 SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD 240 Query: 259 LGLARFLSIDGLCVTVKDMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK 318 LGLARFLSIDGLCVTVK+MVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK Sbjct: 241 LGLARFLSIDGLCVTVKEMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK 300 Query: 319 ALGFTADANFADIIRAHIEDEVKK 342 ALGFTADANFADIIRAHIEDEVKK Sbjct: 301 ALGFTADANFADIIRAHIEDEVKK 324 >ref|YP_004417117.1| hypothetical protein PT7_1953 [Pusillimonas sp. T7-7] gb|AEC20493.1| hypothetical protein PT7_1953 [Pusillimonas sp. T7-7] Length = 324 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 219/321 (68%), Positives = 258/321 (80%) Query: 19 MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQEIKRITLLDVVPAQGFTDPRIEAVTG 78 MHI ITG AGFLGS+L RQLLQ G L GR G+P+ I RITL+DV G +DPRI A+ G Sbjct: 1 MHIAITGAAGFLGSKLTRQLLQNGKLVGRSGKPEAISRITLVDVNAPSGLSDPRINAMAG 60 Query: 79 DIADAAVIERVITPETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALGTKPR 138 +I+D I +ITP+T SIFHLAAIVSG AE DFDLGM INFDATR +LER R LGT+PR Sbjct: 61 NISDPQTIAAIITPDTDSIFHLAAIVSGQAETDFDLGMSINFDATRAMLERIRTLGTRPR 120 Query: 139 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTI 198 +VFTSSVAVFGG LP VPD +PQSSYG QK M ELLV DYSR+GF+DGR LR+PTI Sbjct: 121 MVFTSSVAVFGGPLPDSVPDTMATLPQSSYGTQKAMCELLVSDYSRRGFVDGRTLRLPTI 180 Query: 199 SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD 258 SVRPGAPNKAASSFASGIIREPLNGQ ++CPV DTRMWLMSP+QA+ NLIHGHE++ + Sbjct: 181 SVRPGAPNKAASSFASGIIREPLNGQAAICPVQGDTRMWLMSPQQAVHNLIHGHELDASK 240 Query: 259 LGLARFLSIDGLCVTVKDMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK 318 LG R +S+ GL VTV+ MV ALE+VAG +V + IEW ED+AIKRIVNSWPG FEA++AK Sbjct: 241 LGHTRTISLPGLSVTVRAMVAALERVAGADVARRIEWNEDDAIKRIVNSWPGDFEAQKAK 300 Query: 319 ALGFTADANFADIIRAHIEDE 339 LGF +DA+F II+A++ D+ Sbjct: 301 ELGFGSDADFDSIIQAYLRDQ 321 >ref|YP_004754144.1| nucleoside-diphosphate-sugar epimerase [Collimonas fungivorans Ter331] gb|AEK63321.1| Nucleoside-diphosphate-sugar epimerase [Collimonas fungivorans Ter331] Length = 324 Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 209/322 (64%), Positives = 257/322 (79%), Gaps = 1/322 (0%) Query: 19 MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQEIKRITLLDVVPAQGFTDPRIEAVTG 78 M +VITGGAGFLG RLAR LL++G+L R+GQ Q I +ITL+DV A GF D R+E V G Sbjct: 1 MQVVITGGAGFLGQRLARSLLKQGSLPDRNGQLQAISKITLVDVA-AAGFDDARLEQVIG 59 Query: 79 DIADAAVIERVITPETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALGTKPR 138 DI D A++ERVITP+T ++FHLAAIVSG AEADFDLGM+IN DA+R++LE RA PR Sbjct: 60 DITDPALLERVITPQTAAVFHLAAIVSGQAEADFDLGMRINLDASRLLLECCRACANVPR 119 Query: 139 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTI 198 V+FTSSVAVFGG LPAVV D+T L PQSSYG QK + ELL+ DYSRKGF+DGR LR+PTI Sbjct: 120 VIFTSSVAVFGGALPAVVQDHTALNPQSSYGTQKAIAELLLNDYSRKGFVDGRVLRLPTI 179 Query: 199 SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD 258 SVRPG PN+AASSFASGIIREPLNGQP++CPV PD R+WL+SPR+ IA LIHG+ + Sbjct: 180 SVRPGKPNQAASSFASGIIREPLNGQPAICPVAPDVRLWLLSPRKVIAALIHGYSLAADA 239 Query: 259 LGLARFLSIDGLCVTVKDMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK 318 LG +R +++ G+ VTV +MV ALE+VAGK V +EW D AI RI++SWPGA++ RA Sbjct: 240 LGQSRTVNLPGISVTVAEMVAALERVAGKPVAARVEWAHDPAIDRIISSWPGAWDTTRAN 299 Query: 319 ALGFTADANFADIIRAHIEDEV 340 LGF ADA+F DI+RA+IED++ Sbjct: 300 VLGFVADADFDDIVRAYIEDDL 321 >ref|ZP_04947863.1| Nucleoside-diphosphate-sugar epimerase [Burkholderia dolosa AUO158] gb|EAY71034.1| Nucleoside-diphosphate-sugar epimerase [Burkholderia dolosa AUO158] Length = 323 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 199/321 (61%), Positives = 250/321 (77%) Query: 19 MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQEIKRITLLDVVPAQGFTDPRIEAVTG 78 M ++ITGGAGFLG RLAR+LL+RG L+G DG+ ++I + LLDVV F D R+ +V G Sbjct: 1 MKVLITGGAGFLGQRLARRLLERGELSGPDGRAEKIDELVLLDVVEGGDFGDTRVTSVVG 60 Query: 79 DIADAAVIERVITPETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALGTKPR 138 DIAD AV++R I +T +IFHLAAIVSG AEADFDLGM+IN DA+R +L+ RA G +PR Sbjct: 61 DIADRAVLDRAIDAQTGAIFHLAAIVSGQAEADFDLGMRINLDASRTLLDVCRARGHRPR 120 Query: 139 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTI 198 VVFTSSVAV+GG LP VV D+T L PQSSYGAQK + ELL+ DY+R+GF+DGR LR+PTI Sbjct: 121 VVFTSSVAVYGGTLPDVVQDDTALNPQSSYGAQKAIAELLLCDYARRGFVDGRVLRLPTI 180 Query: 199 SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD 258 SVRPG PN AASSFASGIIREPLNG+ SVCPV TR+WL+SPR AI L+ G EI+GA Sbjct: 181 SVRPGRPNAAASSFASGIIREPLNGEESVCPVPGSTRLWLLSPRGAIEALVAGCEIDGAK 240 Query: 259 LGLARFLSIDGLCVTVKDMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK 318 LG R +++ GL VTV +M+ AL +VAG +VV+LI DE +++IV SWPG ++ RA Sbjct: 241 LGNRRVINLPGLSVTVDEMIAALREVAGDDVVKLIRHARDERVEKIVGSWPGRWDTTRAH 300 Query: 319 ALGFTADANFADIIRAHIEDE 339 ALG T D +FAD+IR++I+DE Sbjct: 301 ALGLTGDTSFADVIRSYIDDE 321 >ref|ZP_02376505.1| NAD-dependent epimerase/dehydratase [Burkholderia ubonensis Bu] Length = 323 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 197/321 (61%), Positives = 250/321 (77%) Query: 19 MHIVITGGAGFLGSRLARQLLQRGTLTGRDGQPQEIKRITLLDVVPAQGFTDPRIEAVTG 78 M ++ITGGAGFLG RLAR+LL+RG LTG DG+ Q I + LLDVV F DPR+ ++ G Sbjct: 1 MKVLITGGAGFLGQRLARKLLERGELTGADGRLQPITELVLLDVVKGGDFGDPRVTSIVG 60 Query: 79 DIADAAVIERVITPETQSIFHLAAIVSGHAEADFDLGMKINFDATRVILERARALGTKPR 138 DIA+ +V+E I +T +IFHLAAIVSG AEADFDLGM+IN DA+R +LE RA G +PR Sbjct: 61 DIAERSVLESAIDTQTGAIFHLAAIVSGQAEADFDLGMRINLDASRTLLEVCRARGHRPR 120 Query: 139 VVFTSSVAVFGGELPAVVPDNTLLMPQSSYGAQKVMGELLVQDYSRKGFIDGRALRMPTI 198 VVFTSSVAV+GG LP VV DNT L PQSSYGA+K + ELL+ DY+R+GF+DGR LR+PTI Sbjct: 121 VVFTSSVAVYGGALPDVVQDNTALNPQSSYGAEKAIAELLLGDYARRGFVDGRVLRLPTI 180 Query: 199 SVRPGAPNKAASSFASGIIREPLNGQPSVCPVTPDTRMWLMSPRQAIANLIHGHEINGAD 258 SVRPG PN AASSFASGIIREPLNG+ SVCPV TR+WL+SPR AI L+ G E++G+ Sbjct: 181 SVRPGRPNAAASSFASGIIREPLNGEESVCPVPGSTRLWLLSPRGAIDALVAGCELDGSR 240 Query: 259 LGLARFLSIDGLCVTVKDMVEALEQVAGKEVVQLIEWKEDEAIKRIVNSWPGAFEAKRAK 318 LG R +++ G+ VTV +M+ AL +VAG EVV+LI + DE +++IV SWPG ++ RA+ Sbjct: 241 LGNKRVINLPGISVTVDEMIAALREVAGDEVVKLIRREPDERVEKIVGSWPGRWDTSRAE 300 Query: 319 ALGFTADANFADIIRAHIEDE 339 ALG DA+F D+IR+++EDE Sbjct: 301 ALGLKGDASFVDVIRSYLEDE 321