BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3688.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776460.1| GntR family transcription regulator protein ... 345 6e-93 ref|YP_261465.1| GntR family transcriptional regulator [Pseudomo... 207 2e-51 ref|YP_551878.1| GntR family transcriptional regulator [Polaromo... 179 3e-43 ref|YP_004418622.1| GntR family transcriptional regulator [Pusil... 178 9e-43 ref|YP_004417116.1| GntR family transcriptional regulator [Pusil... 178 9e-43 >ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64552.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 345 bits (884), Expect = 6e-93, Method: Composition-based stats. Identities = 241/278 (86%), Positives = 256/278 (92%) Query: 1 MRAMKTSSSSRPQGSALASMAAAARGKTTLADHVTNVLAQQIRSGEFAPDARLPSEMELT 60 MRAMKTS SS A+ +ARGK TLADHVT+VLA+QIR+GEFAP+ RLPSEMELT Sbjct: 1 MRAMKTSPSSSAAAQAVPPAPGSARGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELT 60 Query: 61 ERFSVSRTVIREAISRLKSEGLVGSRRGSGTVVLPVSPATPFRLDLKVDEGRDSIQAVLR 120 ERFSVSRTVIREAISRLKSEGLVGSRRGSGTVVLP +PATPFRLDL VD+GRDSIQAVLR Sbjct: 61 ERFSVSRTVIREAISRLKSEGLVGSRRGSGTVVLPANPATPFRLDLDVDDGRDSIQAVLR 120 Query: 121 VIELRRGVEGEMAALAAQRRTRAQNLAIQQALQDIDAAAAAGRDGVQEDFAFHAAISNAS 180 VIELRRGVEGEMAALAAQRRT AQNLAIQQALQ ID AAAAGRDGV EDFAFHAAISNAS Sbjct: 121 VIELRRGVEGEMAALAAQRRTSAQNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNAS 180 Query: 181 HNPLYTSLVQFLSQFLHAAIRVARMNEARSNEFVQQVRAEHAAMAQAISEGNAEAARAAA 240 HNPLYTSLVQFLSQFLHAAIRVARMNEARSNEFVQQVRAEHAA+A+AIS G+AEAARAAA Sbjct: 181 HNPLYTSLVQFLSQFLHAAIRVARMNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAA 240 Query: 241 LRHMEHSAQRIQAADKAFWASAEGQAAARDLARVKSGG 278 LRHME+SAQR+QAAD+AFWASAEGQAAARDLARV+ G Sbjct: 241 LRHMENSAQRLQAADRAFWASAEGQAAARDLARVRDAG 278 >ref|YP_261465.1| GntR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY93628.1| transcriptional regulator, GntR family [Pseudomonas fluorescens Pf-5] Length = 261 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 139/264 (52%), Positives = 179/264 (67%), Gaps = 5/264 (1%) Query: 4 MKTSSSSRPQGSALASMAAAARGKTTLADHVTNVLAQQIRSGEFAPDARLPSEMELTERF 63 M ++ P +LA++ +A+G TLAD VT L I SGE P ARLP+E L ERF Sbjct: 3 MSKPDNAFPAADSLATLKDSAKG--TLADQVTAALKAHIASGEVLPGARLPTEPVLCERF 60 Query: 64 SVSRTVIREAISRLKSEGLVGSRRGSGTVVLPVSPATPFRLDLKVDEGRDSIQAVLRVIE 123 VSRTVIREAISRLKS GLV R+GSGTVV + F +DL V R SI+AVLRV E Sbjct: 61 GVSRTVIREAISRLKSAGLVEVRQGSGTVVCEGAHIKAFTIDLDV---RGSIEAVLRVTE 117 Query: 124 LRRGVEGEMAALAAQRRTRAQNLAIQQALQDIDAAAAAGRDGVQEDFAFHAAISNASHNP 183 LRRG+EGE AALAAQR T +Q AI QAL ID+A AG+DGV++D AFH +IS A+ NP Sbjct: 118 LRRGIEGEAAALAAQRHTPSQLEAIHQALLAIDSAEQAGQDGVEQDLAFHLSISQATGNP 177 Query: 184 LYTSLVQFLSQFLHAAIRVARMNEARSNEFVQQVRAEHAAMAQAISEGNAEAARAAALRH 243 LY SL +F++QF+ AIR+ R NE R + + VRAEH A+ +AI+ + E AR AAL H Sbjct: 178 LYPSLHEFIAQFIKEAIRITRSNEERRKDLARTVRAEHLAVYRAIAARDVEGARQAALSH 237 Query: 244 MEHSAQRIQAADKAFWASAEGQAA 267 + ++ +R+++AD AFW + + A Sbjct: 238 IHNAVERLKSADPAFWRDSGSRIA 261 >ref|YP_551878.1| GntR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE46980.1| transcriptional regulator, GntR family [Polaromonas sp. JS666] Length = 274 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 130/245 (53%), Positives = 166/245 (67%), Gaps = 4/245 (1%) Query: 29 TLADHVTNVLAQQIRSGEFAPDARLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRG 88 TLAD +T VLA+Q+RSG + +ARLP+E + E F VSRTV+RE ISRLKSEGLV +R+G Sbjct: 18 TLADRLTLVLAEQLRSGVYPVNARLPTERTMAEEFGVSRTVVREVISRLKSEGLVETRQG 77 Query: 89 SGTVVLPVSPATPFRLDLKVDEGRDSIQAVLRVIELRRGVEGEMAALAAQRRTRAQNLAI 148 SGT VL + FRL + + VLR+IELR G+E +MAALAA+RRT ++ I Sbjct: 78 SGTAVLDPQSSAAFRLS---SSENNPAEGVLRIIELRCGIEAQMAALAARRRTASEMAEI 134 Query: 149 QQALQDIDAAAAAGRDGVQEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEA 208 + AL+ ID A A G DGV+ED FH AIS A+ NP YT L+ L++ L AIRV R NEA Sbjct: 135 KHALKMIDRAVANGGDGVKEDLEFHMAISRATRNPHYTDLLGMLTRALKDAIRVTRSNEA 194 Query: 209 RSNEFVQQVRAEHAAMAQAISEGNAEAARAAALRHMEHSAQRIQAADKAFWASAEGQAAA 268 R +F QVRAEH A++ AI + EAAR AALRHME + RI+ A+ FW + E + A Sbjct: 195 RRADFTAQVRAEHEAISAAILARDPEAARVAALRHMESTVARIELAEAGFW-TGERRDTA 253 Query: 269 RDLAR 273 + LAR Sbjct: 254 QRLAR 258 >ref|YP_004418622.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC21998.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 262 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 122/247 (49%), Positives = 162/247 (65%), Gaps = 4/247 (1%) Query: 29 TLADHVTNVLAQQIRSGEFAPDARLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRG 88 TL+D +T++L ++IRSG + ++RLP+E +TE + VSRTV+RE +SRLKS GLV +R+G Sbjct: 11 TLSDRLTDMLGREIRSGAYPVNSRLPTEKFMTEEYGVSRTVVREVLSRLKSAGLVETRQG 70 Query: 89 SGTVVLPVSPATPFRLDLKVDEGRDSIQAVLRVIELRRGVEGEMAALAAQRRTRAQNLAI 148 SGTVVL S + FRL D + VLR+IELRRG+EGEMAALAA+RR+ I Sbjct: 71 SGTVVLDPSSSDAFRLG---RPDGDPARGVLRIIELRRGLEGEMAALAAERRSAQDMRRI 127 Query: 149 QQALQDIDAAAAAGRDGVQEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEA 208 +AL ID+A A DGV++D AFH AI+ A+ NP Y L+ L++ L AIRV R NEA Sbjct: 128 NRALAAIDSAVALDGDGVEQDLAFHIAIAQATGNPHYPELLGMLTRALKDAIRVTRGNEA 187 Query: 209 RSNEFVQQVRAEHAAMAQAISEGNAEAARAAALRHMEHSAQRIQAADKAFWASAEGQAAA 268 R + + VR EH A+ AI + + ARAAA HM +A+RIQ D +W A AA Sbjct: 188 RQVQLAEDVRKEHEAIRAAIEAQDIDEARAAAFHHMSSTARRIQNVDPEYWQGASSAAAG 247 Query: 269 RDLARVK 275 R LAR + Sbjct: 248 R-LARTR 253 >ref|YP_004417116.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] gb|AEC20492.1| GntR family transcriptional regulator [Pusillimonas sp. T7-7] Length = 260 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 138/241 (57%), Positives = 172/241 (71%), Gaps = 3/241 (1%) Query: 29 TLADHVTNVLAQQIRSGEFAPDARLPSEMELTERFSVSRTVIREAISRLKSEGLVGSRRG 88 TLAD VT++L +IR +F +RLPSE + +RF VSRTVIREA+SRLK+EGLV +R+G Sbjct: 17 TLADRVTHILLAEIRENKFPAHSRLPSEAVMAKRFGVSRTVIREAVSRLKAEGLVDTRQG 76 Query: 89 SGTVVLPVSPATPFRLDLKVDEGRDSIQAVLRVIELRRGVEGEMAALAAQRRTRAQNLAI 148 SGT VL + ATPFRLD + +DS++AVLRVIELRRGVE EMAALAA+RR+ AQ I Sbjct: 77 SGTSVLEPNTATPFRLDART---QDSLKAVLRVIELRRGVEAEMAALAAERRSAAQFARI 133 Query: 149 QQALQDIDAAAAAGRDGVQEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVARMNEA 208 ++A I A AGRDGV ED AFH IS A NPLYTSL+ +LS +LH AI V R NEA Sbjct: 134 KKAFNAIKKAERAGRDGVDEDLAFHTEISQACGNPLYTSLLSYLSLYLHTAIVVTRANEA 193 Query: 209 RSNEFVQQVRAEHAAMAQAISEGNAEAARAAALRHMEHSAQRIQAADKAFWASAEGQAAA 268 + ++F +QV EH A+ AIS + AARAAAL HME +A R++A D A W + +AA Sbjct: 194 QRDDFSRQVHEEHTAIMDAISRKDPGAARAAALHHMEGAASRLKAIDAASWTAPMDEAAR 253 Query: 269 R 269 R Sbjct: 254 R 254