BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3680.p (176 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776455.1| hypothetical protein Hsero_3059 [Herbaspiril... 209 1e-52 ref|ZP_08870136.1| hypothetical protein AZA_83634 [Azospirillum ... 110 5e-23 ref|NP_767460.1| hypothetical protein bll0820 [Bradyrhizobium ja... 106 2e-21 ref|YP_484330.1| hypothetical protein RPB_0708 [Rhodopseudomonas... 103 7e-21 ref|YP_567284.1| hypothetical protein RPD_0143 [Rhodopseudomonas... 103 1e-20 >ref|YP_003776455.1| hypothetical protein Hsero_3059 [Herbaspirillum seropedicae SmR1] gb|ADJ64547.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 121/173 (69%), Positives = 135/173 (78%), Gaps = 3/173 (1%) Query: 5 HPQHSEPTEQIAPAPRHWALLPGAGFADSYRIRLTPQLAQLNTTEITARMMASQPAWVSA 64 H E+ PAPRHWALLPGA FADS+RI LTP+LA L+TTEI ARMMA QP W+SA Sbjct: 2 HASRPPQAEETTPAPRHWALLPGARFADSFRIPLTPELAPLDTTEIAARMMAEQPGWISA 61 Query: 65 LIRLRDRLMAPLGLKQAGDHGGGPAGFPLLLAAPARVVMGMDDRHLDFRLCVEKSPAATS 124 L+R+RD L+APLGLK+AGDHG PAGFPLLLA PARVVMG+DD HLDFRLCVEK A Sbjct: 62 LMRVRDLLVAPLGLKRAGDHGA-PAGFPLLLAEPARVVMGLDDSHLDFRLCVEKLEAGGR 120 Query: 125 QAADEEQWLTVTTVVRTKRLLGKAYLAAIMPFHRCIARTLLLGVLRE--ERPA 175 + + WLTVTTVVRTKRLLG YLAAIMPFHR IARTLL GV R ++PA Sbjct: 121 EGSAGPGWLTVTTVVRTKRLLGSVYLAAIMPFHRRIARTLLQGVARSHPDKPA 173 >ref|ZP_08870136.1| hypothetical protein AZA_83634 [Azospirillum amazonense Y2] gb|EGY00272.1| hypothetical protein AZA_83634 [Azospirillum amazonense Y2] Length = 181 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 77/170 (45%), Positives = 97/170 (57%), Gaps = 17/170 (10%) Query: 6 PQHSEPTEQIAPAPRHWALLPGAGFADSYRIRL----TP-QLAQLNTTEITARMMASQPA 60 PQ P E + PAP WALLPGA FAD++R+ L TP + L+ RMM + P Sbjct: 13 PQEVAPHE-VTPAPDTWALLPGAQFADAFRLTLPSTGTPVDVRPLDALTAAQRMMGTSPT 71 Query: 61 WVSALIRLRDRLMAPLGLKQA-----GDHGGGPAGFPLLLAAPARVVMGMDDRHLDFRLC 115 WV L+ LR+ ++APLGLK G FP+L + P RVV+GM D+HLDFR Sbjct: 72 WVRRLMALRNAIVAPLGLKAPRPPAEASRAGHIGIFPILSSGPDRVVLGMADKHLDFRAV 131 Query: 116 VEKSPAATSQAADEEQWLTVTTVVRTKRLLGKAYLAAIMPFHRCIARTLL 165 V+ Q Q +T TTVVRT LG+AYL IMPFHR + RT+L Sbjct: 132 VD-----VRQETGGCQ-VTATTVVRTHNWLGRAYLTLIMPFHRLVVRTML 175 >ref|NP_767460.1| hypothetical protein bll0820 [Bradyrhizobium japonicum USDA 110] dbj|BAC46085.1| bll0820 [Bradyrhizobium japonicum USDA 110] Length = 162 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 89/156 (57%), Gaps = 12/156 (7%) Query: 14 QIAPAPRHWALLPGAGFADSYRIRLTPQLAQLNTTEITARMMASQPAWVSALIRLRDRLM 73 ++ P LL GA F D++R+ + +N E RM+ P WV ALIRLR+ L+ Sbjct: 7 EVPPNVDAGTLLAGAQFVDAFRVEIGA--TAVNAREACVRMVLHGPRWVDALIRLRNILV 64 Query: 74 APLGLKQAGDHGGGPAG----FPLLLAAPARVVMGMDDRHLDFRLCVEKSPAATSQAADE 129 P GLK +G+ P G FP++ P R+V G +D HLDFRL V+ + + Sbjct: 65 RPFGLKTSGEGAPAPYGLIGLFPVVSETPERLVAGFNDSHLDFRLVVDVA------GTEA 118 Query: 130 EQWLTVTTVVRTKRLLGKAYLAAIMPFHRCIARTLL 165 ++ +T TT+VRT LLG+ YLA IMPFH+ + R ++ Sbjct: 119 DRQVTSTTLVRTHNLLGRTYLALIMPFHKFVVRGMM 154 >ref|YP_484330.1| hypothetical protein RPB_0708 [Rhodopseudomonas palustris HaA2] gb|ABD05419.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 157 Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 68/164 (41%), Positives = 92/164 (56%), Gaps = 18/164 (10%) Query: 14 QIAPAPRHWALLPGAGFADSYRIRLTPQLAQLNTTEITARMMASQPAWVSALIRLRDRLM 73 +IAP+ ALLPGA F D+Y + + + L+ + RM+ P W+ AL+RLR+ ++ Sbjct: 5 EIAPSVDREALLPGAQFIDAYCVPIGSR--ALDARQAATRMIEHGPGWIDALMRLRNLVV 62 Query: 74 APLGLKQAGDHGGGPAG-----FPLLLAAPARVVMGMDDRHLDFRLC--VEKSPAATSQA 126 P GLK GG AG FP+L AP R+V G DD HLDFR+ VE PA Sbjct: 63 TPFGLKTPAP-GGSAAGDRIGVFPVLDEAPHRIVAGFDDHHLDFRVVIDVEDGPA----- 116 Query: 127 ADEEQWLTVTTVVRTKRLLGKAYLAAIMPFHRCIARTLLLGVLR 170 E+ + TT+V T LG+ YLA IMPFHR + R +L + R Sbjct: 117 ---ERRVVATTLVLTHNWLGRTYLATIMPFHRLVVRAMLQQLAR 157 >ref|YP_567284.1| hypothetical protein RPD_0143 [Rhodopseudomonas palustris BisB5] gb|ABE37383.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 157 Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 83/157 (52%), Gaps = 12/157 (7%) Query: 13 EQIAPAPRHWALLPGAGFADSYRIRLTPQLAQLNTTEITARMMASQPAWVSALIRLRDRL 72 EQIAP ALLPGA F D+Y + + L+ E RM+ P W+ L+RLR+ + Sbjct: 4 EQIAPVVDREALLPGAQFIDAYSVTIGDN--ALDAREAATRMVEHGPRWIGTLMRLRNIV 61 Query: 73 MAPLGLKQAGDHGGGPA----GFPLLLAAPARVVMGMDDRHLDFRLCVEKSPAATSQAAD 128 + P GLK G FP+L P R+V G DD HLDFR+ V+ A + Sbjct: 62 VTPFGLKTPAPGGSARGDRIGSFPVLSETPTRIVAGFDDSHLDFRIVVDVVDGAAGRR-- 119 Query: 129 EEQWLTVTTVVRTKRLLGKAYLAAIMPFHRCIARTLL 165 + +T+V T LG+ YLAAIMPFHR + R +L Sbjct: 120 ----VIASTLVLTHNRLGRTYLAAIMPFHRLVVRAML 152