BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3679.p         (56 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02463380.1| cyd operon protein YbgT, putative [Burkholder...    59   2e-07
ref|YP_559024.1| hypothetical protein Bxe_A1994 [Burkholderia xe...    54   6e-06
ref|ZP_03269683.1| cyd operon protein YbgT [Burkholderia sp. H16...    54   6e-06

>ref|ZP_02463380.1| cyd operon protein YbgT, putative [Burkholderia thailandensis
          MSMB43]
          Length = 87

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 33/52 (63%)

Query: 1  MWYFAWILGIGLALAFGIINVMWLEANYAFGRRKAEETHERFASARAAEKQR 52
          MWYF+WILGIG+AL FGIIN MWLEAN  F    A + H+    A   E  R
Sbjct: 35 MWYFSWILGIGVALGFGIINAMWLEANGNFPTGAAGDAHDAHGPAAPPEDPR 86


>ref|YP_559024.1| hypothetical protein Bxe_A1994 [Burkholderia xenovorans LB400]
 gb|ABE30972.1| hypothetical protein Bxe_A1994 [Burkholderia xenovorans LB400]
          Length = 93

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/32 (78%), Positives = 26/32 (81%)

Query: 1  MWYFAWILGIGLALAFGIINVMWLEANYAFGR 32
          MWYF WILGIG+AL FGIINVMWLEA   F R
Sbjct: 45 MWYFTWILGIGVALGFGIINVMWLEAGGKFAR 76


>ref|ZP_03269683.1| cyd operon protein YbgT [Burkholderia sp. H160]
 gb|EDZ98742.1| cyd operon protein YbgT [Burkholderia sp. H160]
          Length = 47

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/32 (71%), Positives = 26/32 (81%)

Query: 1  MWYFAWILGIGLALAFGIINVMWLEANYAFGR 32
          MWYF WILG+G+AL FGIINV+WLE N  F R
Sbjct: 1  MWYFTWILGVGVALGFGIINVLWLETNGKFAR 32