BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3678.p (379 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776454.1| cytochrome bd-type quinol oxidase subunit 2 ... 652 0.0 ref|YP_004753413.1| cytochrome d ubiquinol oxidase subunit II [C... 498 e-139 ref|YP_004038973.1| cytochrome d ubiquinol oxidase subunit II [M... 439 e-121 ref|YP_003050306.1| cytochrome d ubiquinol oxidase subunit II [M... 439 e-121 ref|ZP_03268415.1| cytochrome d ubiquinol oxidase, subunit II [B... 423 e-116 >ref|YP_003776454.1| cytochrome bd-type quinol oxidase subunit 2 [Herbaspirillum seropedicae SmR1] gb|ADJ64546.1| cytochrome bd-type quinol oxidase, subunit 2, protein [Herbaspirillum seropedicae SmR1] Length = 379 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 370/379 (97%), Positives = 375/379 (98%) Query: 1 MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINSIGPTWEG 60 MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILIN+IGPTWEG Sbjct: 1 MIFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINAIGPTWEG 60 Query: 61 NQTWFITAGGATFAAWPLVYATAFSGFYIALMILLFSLFFRPVGFDYRSKVADPRWRNAW 120 NQTWFITAGGATFAAWPLVYATAFSGFYIALM+LLFSLFFRPVGFDYRSKVADPRWRNAW Sbjct: 61 NQTWFITAGGATFAAWPLVYATAFSGFYIALMVLLFSLFFRPVGFDYRSKVADPRWRNAW 120 Query: 121 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAM 180 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAM Sbjct: 121 DWGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAM 180 Query: 181 LLMHGAAFAFVKTEAAVGERSRKTVIGAALVTVLLFVAGGFWVAQMPGYRITSMPDANSA 240 LLMHGAAFAFVKTEAAV ERSRKT+IGAALVTVLLF+AGGFWVAQMPGYRI SMPDANSA Sbjct: 181 LLMHGAAFAFVKTEAAVAERSRKTIIGAALVTVLLFIAGGFWVAQMPGYRIVSMPDANSA 240 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPVMGVAGAVLAALLALVRSARLAFIASGLSVT 300 FTPLAKTVEVVAGAWFDNYAKWPVTKLFP +GVAGAVLAALLALVRSARLAFIAS LSVT Sbjct: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPALGVAGAVLAALLALVRSARLAFIASALSVT 300 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR Sbjct: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 Query: 361 VVKGKVTARDIHENEHTAY 379 VVKGKVTARDIHENEHTAY Sbjct: 361 VVKGKVTARDIHENEHTAY 379 >ref|YP_004753413.1| cytochrome d ubiquinol oxidase subunit II [Collimonas fungivorans Ter331] gb|AEK62590.1| Cytochrome d ubiquinol oxidase subunit II [Collimonas fungivorans Ter331] Length = 379 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 281/379 (74%), Positives = 318/379 (83%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINSIGPTWEGN 61 +FDYETLK+IWW FVGVL+IGFALTDGFDFGVGMMLPF GK D ERR++INSIG TWEGN Sbjct: 1 MFDYETLKIIWWGFVGVLLIGFALTDGFDFGVGMMLPFIGKTDGERRVVINSIGSTWEGN 60 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMILLFSLFFRPVGFDYRSKVADPRWRNAWD 121 QTWFITAGGA FAAWPLVY AFSGFY+ALM+LLFSLFFRPVGFDYRSKVAD RWRNAWD Sbjct: 61 QTWFITAGGAIFAAWPLVYGAAFSGFYVALMLLLFSLFFRPVGFDYRSKVADTRWRNAWD 120 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 WGLF GGFVPPLI GVAFGNL LGVPFHYDDTMRVEYTG+FF LLNPFGLLAGLLSVAML Sbjct: 121 WGLFAGGFVPPLIFGVAFGNLFLGVPFHYDDTMRVEYTGNFFQLLNPFGLLAGLLSVAML 180 Query: 182 LMHGAAFAFVKTEAAVGERSRKTVIGAALVTVLLFVAGGFWVAQ-MPGYRITSMPDANSA 240 LMHGAA+ VKT+ + +R+R A LVT LFVAGGFWVA + GYRI++MPD N+A Sbjct: 181 LMHGAAYLQVKTDDVIAQRARNVAKIAGLVTAALFVAGGFWVAYGIDGYRISAMPDMNTA 240 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPVMGVAGAVLAALLALVRSARLAFIASGLSVT 300 F P AKTV VAGAWFDNYA WP PV+ VA A+L + A AF++SG+SVT Sbjct: 241 FMPTAKTVTTVAGAWFDNYAHWPAIWALPVVAVAAALLCTAFSSANKAMAAFLSSGISVT 300 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 +ILTAG SLFPF+MPSSLD SSLT+WD+VSSHKTLG+MFW+V+I LP+I++YT WVYR Sbjct: 301 AVILTAGASLFPFIMPSSLDPNSSLTIWDAVSSHKTLGIMFWVVVIMLPIIMLYTTWVYR 360 Query: 361 VVKGKVTARDIHENEHTAY 379 V++GKVT + I +NEHTAY Sbjct: 361 VMRGKVTLKHIEDNEHTAY 379 >ref|YP_004038973.1| cytochrome d ubiquinol oxidase subunit II [Methylovorus sp. MP688] gb|ADQ83737.1| cytochrome d ubiquinol oxidase, subunit II [Methylovorus sp. MP688] Length = 382 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 236/379 (62%), Positives = 292/379 (77%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINSIGPTWEGN 61 I DY+TLKL+WW FVGVL+IGFA+ DGFD GV +LPF GK D ERR++INS+GP WEGN Sbjct: 4 IIDYQTLKLVWWLFVGVLLIGFAIMDGFDMGVTTLLPFLGKTDDERRVIINSVGPVWEGN 63 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMILLFSLFFRPVGFDYRSKVADPRWRNAWD 121 QTW ITAGGA FAAWPLVYA AFSG Y+AL+++LF+LFFRPVGFDYRSK+ P WRN+WD Sbjct: 64 QTWLITAGGAIFAAWPLVYAAAFSGLYVALLLVLFALFFRPVGFDYRSKMESPAWRNSWD 123 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 W LF+GGFVP L+ GVAFGNLLLG+PFHYDDT+R YTGSF+ALLNPF LL GL+S+ ML Sbjct: 124 WALFVGGFVPSLVFGVAFGNLLLGLPFHYDDTLRSFYTGSFWALLNPFALLCGLVSLTML 183 Query: 182 LMHGAAFAFVKTEAAVGERSRKTVIGAALVTVLLFVAGGFWVAQ-MPGYRITSMPDANSA 240 LMHGA + ++TE V +R+ + + + +LF G W+A + GYR+ +PD N+A Sbjct: 184 LMHGAIYLQLRTEGVVQKRAARAARISGITCAILFALAGLWLAAGIEGYRLLQIPDVNNA 243 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPVMGVAGAVLAALLALVRSARLAFIASGLSVT 300 PL KTVE VAGAW NY+ +P L P +G AG LA L A + R AF+ S L++ Sbjct: 244 INPLHKTVEKVAGAWLSNYSTYPWMTLAPTVGFAGIALALLSAAKKWERCAFVFSSLALA 303 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 GIILTAG S+FPF+MPSS D SSLTLWD+VSS KTLG+MF + LIFLPLI++YT WV+R Sbjct: 304 GIILTAGFSMFPFIMPSSTDPVSSLTLWDAVSSKKTLGIMFIVTLIFLPLILIYTSWVFR 363 Query: 361 VVKGKVTARDIHENEHTAY 379 V++GK+T + I +N HTAY Sbjct: 364 VLRGKITVQHIRDNSHTAY 382 >ref|YP_003050306.1| cytochrome d ubiquinol oxidase subunit II [Methylovorus glucosetrophus SIP3-4] gb|ACT49779.1| cytochrome d ubiquinol oxidase, subunit II [Methylovorus glucosetrophus SIP3-4] Length = 382 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 237/379 (62%), Positives = 291/379 (76%), Gaps = 1/379 (0%) Query: 2 IFDYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINSIGPTWEGN 61 I DY+TLKL+WW FVGVL+IGFA+ DGFD GV +LPF GK D ERR++INS+GP WEGN Sbjct: 4 IIDYQTLKLVWWLFVGVLLIGFAIMDGFDMGVTTLLPFLGKTDDERRVIINSVGPVWEGN 63 Query: 62 QTWFITAGGATFAAWPLVYATAFSGFYIALMILLFSLFFRPVGFDYRSKVADPRWRNAWD 121 QTW ITAGGA FAAWPLVYA AFSG Y+AL+++LF+LFFRPVGFDYRSK+ P WRN WD Sbjct: 64 QTWLITAGGAIFAAWPLVYAAAFSGLYVALLLVLFALFFRPVGFDYRSKMESPAWRNGWD 123 Query: 122 WGLFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAML 181 W LF+GGFVP L+ GVAFGNLLLG+PFHYDDT+R YTGSF+ALLNPF LL GL+S+ ML Sbjct: 124 WALFVGGFVPSLVFGVAFGNLLLGLPFHYDDTLRSFYTGSFWALLNPFALLCGLVSLTML 183 Query: 182 LMHGAAFAFVKTEAAVGERSRKTVIGAALVTVLLFVAGGFWVAQ-MPGYRITSMPDANSA 240 LMHGA + ++TE V +R+ + + + +LF G W+A + GYR+ +PD NSA Sbjct: 184 LMHGAIYLQLRTEGIVQKRAARAARISGITCAILFALAGLWLAAGIEGYRLLQIPDVNSA 243 Query: 241 FTPLAKTVEVVAGAWFDNYAKWPVTKLFPVMGVAGAVLAALLALVRSARLAFIASGLSVT 300 PL KTVE VAGAW NY+ +P L P +G AG LA L A + R AF+ S L++ Sbjct: 244 INPLHKTVEKVAGAWLSNYSTYPWMTLAPTVGFAGIALALLSAAKKWERCAFVFSSLALA 303 Query: 301 GIILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYR 360 GIILTAG S+FPF+MPSS D SSLTLWD+VSS KTLG+MF + LIFLPLI++YT WV+R Sbjct: 304 GIILTAGFSMFPFIMPSSTDPVSSLTLWDAVSSKKTLGIMFIVTLIFLPLILIYTSWVFR 363 Query: 361 VVKGKVTARDIHENEHTAY 379 V++GK+T + I +N HTAY Sbjct: 364 VLRGKITVQHIRDNSHTAY 382 >ref|ZP_03268415.1| cytochrome d ubiquinol oxidase, subunit II [Burkholderia sp. H160] gb|EDZ99976.1| cytochrome d ubiquinol oxidase, subunit II [Burkholderia sp. H160] Length = 378 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 228/377 (60%), Positives = 280/377 (74%), Gaps = 1/377 (0%) Query: 4 DYETLKLIWWAFVGVLIIGFALTDGFDFGVGMMLPFAGKNDTERRILINSIGPTWEGNQT 63 DY LKLIWW +GVL+IGFALTDGFD G ++LPF K D+ERRI++N++G TWEGNQ Sbjct: 2 DYAALKLIWWVLIGVLLIGFALTDGFDMGAAILLPFIAKTDSERRIVVNTVGATWEGNQV 61 Query: 64 WFITAGGATFAAWPLVYATAFSGFYIALMILLFSLFFRPVGFDYRSKVADPRWRNAWDWG 123 WF+TAGGA FAAWPL YA +FSGFY A++++LF+LFFRPVGFDYR K DPRWRNAWDWG Sbjct: 62 WFVTAGGAMFAAWPLAYAASFSGFYFAMLLVLFALFFRPVGFDYRGKREDPRWRNAWDWG 121 Query: 124 LFIGGFVPPLICGVAFGNLLLGVPFHYDDTMRVEYTGSFFALLNPFGLLAGLLSVAMLLM 183 LFIGGFVP L+ G+AFGNLL GVPF +D +RV Y GSFF LLNPF LL GL+SV+ML Sbjct: 122 LFIGGFVPALVFGIAFGNLLQGVPFSFDTDLRVTYHGSFFGLLNPFALLTGLVSVSMLAA 181 Query: 184 HGAAFAFVKTEAAVGERSRKTVIGAALVTVLLFVAGGFWVAQM-PGYRITSMPDANSAFT 242 HGAAF KT+ V ER+ K + AAL TV+LF+ G VA M GY+I MP ++ Sbjct: 182 HGAAFVKWKTDDVVHERASKALRLAALCTVVLFLVAGALVATMIGGYQIVDMPPLDAVSN 241 Query: 243 PLAKTVEVVAGAWFDNYAKWPVTKLFPVMGVAGAVLAALLALVRSARLAFIASGLSVTGI 302 PL KTV G W NYA +P T + P+ GV G VLA LA R AF+++ L + G+ Sbjct: 242 PLMKTVIGAPGLWLVNYALYPWTVIAPLAGVVGGVLAVALARSRFETTAFLSTSLMIVGV 301 Query: 303 ILTAGMSLFPFVMPSSLDAKSSLTLWDSVSSHKTLGLMFWMVLIFLPLIIVYTGWVYRVV 362 ILTAG S+FPF+MPSSLD +SSLT+WD+ SS TL +M + V++FLP I++YTGWVYRV+ Sbjct: 302 ILTAGFSMFPFIMPSSLDGRSSLTMWDATSSQMTLEIMLFAVIVFLPTILLYTGWVYRVM 361 Query: 363 KGKVTARDIHENEHTAY 379 +GKVTA I EN H+ Y Sbjct: 362 RGKVTAAAIEENHHSMY 378