BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3677.p (540 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776453.1| cytochrome bd-type quinol oxidase subunit 1 ... 1029 0.0 ref|YP_004753412.1| cytochrome d ubiquinol oxidase subunit I [Co... 865 0.0 ref|ZP_03268416.1| cytochrome bd ubiquinol oxidase subunit I [Bu... 777 0.0 ref|YP_556904.1| putative cytochrome bd ubiquinol oxidase,subuni... 775 0.0 ref|ZP_02361570.1| cytochrome d ubiquinol oxidase, subunit I [Bu... 775 0.0 >ref|YP_003776453.1| cytochrome bd-type quinol oxidase subunit 1 [Herbaspirillum seropedicae SmR1] gb|ADJ64545.1| cytochrome bd-type quinol oxidase, subunit 1, protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 1029 bits (2661), Expect = 0.0, Method: Composition-based stats. Identities = 529/540 (97%), Positives = 534/540 (98%) Query: 1 MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60 MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK Sbjct: 1 MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60 Query: 61 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFG 120 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFF+ESTFVGLFFFG Sbjct: 61 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFLESTFVGLFFFG 120 Query: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN Sbjct: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180 Query: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL Sbjct: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240 Query: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT Sbjct: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300 Query: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALAKLKAGDKSPEARAEFDKLKKDLGYGLLL 360 RSADTQVLGIKDLKKEHEARIRNGMLAYAAL KLK+GDKSPEARAEFDKLKKDLGYGLLL Sbjct: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALTKLKSGDKSPEARAEFDKLKKDLGYGLLL 360 Query: 361 KKYTNNVVDATPEQISLAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA 420 KKYTN VVDATPEQIS+AVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA Sbjct: 361 KKYTNKVVDATPEQISMAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA 420 Query: 421 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG Sbjct: 421 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480 Query: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYHWETKGHEKSPGDVLPPPLNPSANAGSH 540 FILFYTFLLVVEMILMVKYARLGPSSLHTGQY+WE KG E PGDVLPPPLNPSANAG+H Sbjct: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYYWENKGKESGPGDVLPPPLNPSANAGNH 540 >ref|YP_004753412.1| cytochrome d ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] gb|AEK62589.1| Cytochrome d ubiquinol oxidase subunit I [Collimonas fungivorans Ter331] Length = 528 Score = 865 bits (2236), Expect = 0.0, Method: Composition-based stats. Identities = 430/515 (83%), Positives = 477/515 (92%) Query: 1 MVPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGK 60 M+PIDEVV+LSRLQFA TA++HFLFVPLTLGL+WILVIMESVYVMTG+ IYKDMTRFWGK Sbjct: 1 MIPIDEVVALSRLQFAATAMFHFLFVPLTLGLAWILVIMESVYVMTGSPIYKDMTRFWGK 60 Query: 61 LFGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFG 120 LFGINFAMG+ATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEG+MAFF+ESTFVGLFFFG Sbjct: 61 LFGINFAMGIATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGMMAFFLESTFVGLFFFG 120 Query: 121 WDKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFN 180 WD+LSR QHL++T LVALGS+LSALWILIANGWMNNPVGAEFN+ETMRMEL S+ DVIFN Sbjct: 121 WDRLSRVQHLLITFLVALGSSLSALWILIANGWMNNPVGAEFNYETMRMELTSIVDVIFN 180 Query: 181 PVAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVL 240 PVAQVKFVHT++AGYV ASMFVLG+SA+YLLK RDTAFALRSFA+AAGFGLA+TLSVIVL Sbjct: 181 PVAQVKFVHTLSAGYVAASMFVLGISAYYLLKGRDTAFALRSFAIAAGFGLASTLSVIVL 240 Query: 241 GDESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIAT 300 GDESGYTAGEVNKVK+AA+EAEW T PAPAG+T+FG PN+KE+RTD+A KIPYVLGLI T Sbjct: 241 GDESGYTAGEVNKVKMAAMEAEWHTEPAPAGITVFGWPNEKEQRTDFAFKIPYVLGLIGT 300 Query: 301 RSADTQVLGIKDLKKEHEARIRNGMLAYAALAKLKAGDKSPEARAEFDKLKKDLGYGLLL 360 RS D Q+ GI DLKKEHE RIRNGMLAYAAL +LK GDKSPEA A FDKLK DLGYGLLL Sbjct: 301 RSVDKQITGIHDLKKEHEVRIRNGMLAYAALTRLKGGDKSPEAVAAFDKLKDDLGYGLLL 360 Query: 361 KKYTNNVVDATPEQISLAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLA 420 KKYT VVDATPEQI++AVNDT PK+AP+FWSFR MV LG LFLFIFS SF+FL +K+LA Sbjct: 361 KKYTPKVVDATPEQIAMAVNDTFPKIAPMFWSFRLMVGLGILFLFIFSCSFYFLIRKKLA 420 Query: 421 PQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAG 480 QRWLLRLAV SIPLPW+A ELGW++AEYGRQPWTI+G+LPTHLSAS+LQPGSLYFSLAG Sbjct: 421 KQRWLLRLAVYSIPLPWVAIELGWLLAEYGRQPWTISGVLPTHLSASTLQPGSLYFSLAG 480 Query: 481 FILFYTFLLVVEMILMVKYARLGPSSLHTGQYHWE 515 F+ FY FL ++EMILMVKYAR GPSSLHTG+YHWE Sbjct: 481 FLGFYGFLFIIEMILMVKYARRGPSSLHTGKYHWE 515 >ref|ZP_03268416.1| cytochrome bd ubiquinol oxidase subunit I [Burkholderia sp. H160] gb|EDZ99977.1| cytochrome bd ubiquinol oxidase subunit I [Burkholderia sp. H160] Length = 530 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 390/536 (72%), Positives = 456/536 (85%), Gaps = 8/536 (1%) Query: 2 VPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKL 61 +P+ EVV+LSRLQFA+TALYHFLFVPLTLGL+W+LVIMESVYVMTG QIYKDMT+FWGKL Sbjct: 1 MPVSEVVALSRLQFAITALYHFLFVPLTLGLAWLLVIMESVYVMTGKQIYKDMTQFWGKL 60 Query: 62 FGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGW 121 FGINFAMGVATG+TLEFQFGTNW+YYSHYVGDIFG PLA+EGLMAFF+ESTFVGLFFFGW Sbjct: 61 FGINFAMGVATGLTLEFQFGTNWAYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW 120 Query: 122 DKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNP 181 ++LS+ QHLIVT VALGSNLSALWIL+ANGWMNNPVGA+FN++TMRMEL S+ VIFNP Sbjct: 121 NRLSKVQHLIVTFCVALGSNLSALWILVANGWMNNPVGAQFNYQTMRMELDSIGSVIFNP 180 Query: 182 VAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLG 241 VAQVKFVHTV+AGYVTA+MFVLGVS+WYLLK RDT FALRSFA+AAGFGLA+ L VIVLG Sbjct: 181 VAQVKFVHTVSAGYVTAAMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASALCVIVLG 240 Query: 242 DESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATR 301 DESGY GEV +VKLAAIE+EW+T PAPA T+FG+PN KE+RTDYA+++PY LG+IATR Sbjct: 241 DESGYRTGEVQQVKLAAIESEWETAPAPAPFTVFGIPNQKEQRTDYAIRVPYALGIIATR 300 Query: 302 SADTQVLGIKDLKKEHEARIRNGMLAYAALAKLKAGDKSPEARAEFDKLKKDLGYGLLLK 361 S D V+G++DL E+E RI+NGMLA++AL +LKAGD S EA AEFDK K+DLGYGLLLK Sbjct: 301 SLDEPVVGLRDLIAENEGRIKNGMLAFSALQRLKAGDSSDEAHAEFDKYKEDLGYGLLLK 360 Query: 362 KYTNNVVDATPEQISLAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQ--L 419 ++T NV DATP+QI+ A TIP V PLF+SFR MV LG LFL F +FWF A++ L Sbjct: 361 QFTPNVTDATPDQIAEAAKSTIPPVLPLFFSFRMMVGLGLLFLATFVLAFWFCAQRTLLL 420 Query: 420 APQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLA 479 +RW LR AV +IPLPW+AAE GWIVAE GRQPW+IAGILPT+L+AS+L P LY S+ Sbjct: 421 EKRRWFLRWAVAAIPLPWLAAEFGWIVAEMGRQPWSIAGILPTNLAASTLTPRDLYLSIG 480 Query: 480 GFILFYTFLLVVEMILMVKYARLGPSSLHTGQYHWETKGHEKSPGDVLPPPLNPSA 535 GF+LFYT L ++E++LM KYARLGPSSLHTG+YH E V PP NP+A Sbjct: 481 GFVLFYTGLFIIEIMLMFKYARLGPSSLHTGRYHHEND------QPVTPPLSNPAA 530 >ref|YP_556904.1| putative cytochrome bd ubiquinol oxidase,subunit I [Burkholderia xenovorans LB400] ref|YP_559109.1| cytochrome bd ubiquinol oxidase, subunit I [Burkholderia xenovorans LB400] gb|ABE28852.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Burkholderia xenovorans LB400] gb|ABE31057.1| cytochrome bd quinol oxidase subunit 1 apoprotein [Burkholderia xenovorans LB400] Length = 535 Score = 775 bits (2002), Expect = 0.0, Method: Composition-based stats. Identities = 394/536 (73%), Positives = 453/536 (84%), Gaps = 3/536 (0%) Query: 2 VPIDEVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKL 61 +P+ EVV LSRLQFA+TALYHFLFVPLTLGLSW+LVIMESVYVMTG QIYKDMT+FWGKL Sbjct: 1 MPVSEVVELSRLQFAITALYHFLFVPLTLGLSWLLVIMESVYVMTGKQIYKDMTQFWGKL 60 Query: 62 FGINFAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGW 121 FGINFAMGV TG+TLEFQFGTNWSYYSHYVGDIFG PLA+EGLMAFF+ESTFVGLFFFGW Sbjct: 61 FGINFAMGVTTGLTLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW 120 Query: 122 DKLSRKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNP 181 +LSR QH+IVT LVALGSNLSALWIL+ANGWMNNPVGA FN++TMRMEL S+ V+FNP Sbjct: 121 KRLSRVQHVIVTFLVALGSNLSALWILVANGWMNNPVGATFNYQTMRMELDSIFSVLFNP 180 Query: 182 VAQVKFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLG 241 VAQVKFVHTV+AGYVTASMFVLGVS+WYLLK RDT FALRSFA+AAGFGLA+TL VIVLG Sbjct: 181 VAQVKFVHTVSAGYVTASMFVLGVSSWYLLKRRDTEFALRSFAIAAGFGLASTLCVIVLG 240 Query: 242 DESGYTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATR 301 DESGY GEV +VKLAAIE+EW+T PAPA T+ G+PN KEERTDYA+++PY LGLIATR Sbjct: 241 DESGYRTGEVQQVKLAAIESEWETAPAPAPFTIIGIPNQKEERTDYAIRVPYALGLIATR 300 Query: 302 SADTQVLGIKDLKKEHEARIRNGMLAYAALAKLKAGDKSPEARAEFDKLKKDLGYGLLLK 361 S D V+G+KDL +EARIRNGMLAYAAL KLK GD + EA+A FD K+DLGYGL+LK Sbjct: 301 SLDEPVVGLKDLMVRNEARIRNGMLAYAALQKLKQGDVTDEAKAAFDAHKQDLGYGLMLK 360 Query: 362 KYTNNVVDATPEQISLAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQ--L 419 ++T NV DATP+QI+ A TIP VAP+F+SFR MV LG LFL F +FWF A++ L Sbjct: 361 QFTANVTDATPDQITQAAKKTIPPVAPVFFSFRLMVGLGILFLATFVLAFWFCAQRSLLL 420 Query: 420 APQRWLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLA 479 +RW LR A+ +IPLPW+AAE GWIVAE GRQPWTIAGILPT+LSASSL G LY S+ Sbjct: 421 EKRRWFLRWALWAIPLPWLAAEFGWIVAEVGRQPWTIAGILPTNLSASSLTAGDLYLSIG 480 Query: 480 GFILFYTFLLVVEMILMVKYARLGPSSLHTGQYHWETKGHEKSPGDVLPPPLNPSA 535 GF++FYT L ++E++LM KYARLGPSSLHTG+YH E ++ P D P P + A Sbjct: 481 GFVVFYTVLFIIEIMLMFKYARLGPSSLHTGRYHHEQPSPDQ-PLDNRPLPTSTVA 535 >ref|ZP_02361570.1| cytochrome d ubiquinol oxidase, subunit I [Burkholderia oklahomensis C6786] Length = 531 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 391/512 (76%), Positives = 441/512 (86%), Gaps = 2/512 (0%) Query: 6 EVVSLSRLQFAVTALYHFLFVPLTLGLSWILVIMESVYVMTGNQIYKDMTRFWGKLFGIN 65 EVV LSRLQF +TALYHFLFVPLTLG+SW+LVIME+VYVMTG Q+YKDMT+FWGKLFGIN Sbjct: 5 EVVDLSRLQFGITALYHFLFVPLTLGMSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGIN 64 Query: 66 FAMGVATGITLEFQFGTNWSYYSHYVGDIFGTPLAIEGLMAFFMESTFVGLFFFGWDKLS 125 FAMGV TGITLEFQFGTNWSYYSHYVGDIFG PLA+EGLMAFF+ESTFVGLFFFGW++LS Sbjct: 65 FAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLS 124 Query: 126 RKQHLIVTVLVALGSNLSALWILIANGWMNNPVGAEFNFETMRMELVSMTDVIFNPVAQV 185 + QHLIVT LVALGSNLSALWIL+ANGWMNNPVGAEFN++TMRMEL ++ DVIFNPVAQV Sbjct: 125 KVQHLIVTFLVALGSNLSALWILVANGWMNNPVGAEFNYQTMRMELSNLFDVIFNPVAQV 184 Query: 186 KFVHTVAAGYVTASMFVLGVSAWYLLKARDTAFALRSFAVAAGFGLAATLSVIVLGDESG 245 KFVHTV+AGYVTA+MFVLGVSAWYLLK RDT FALRSFAVAAGFGLA+TL VIVLGDESG Sbjct: 185 KFVHTVSAGYVTAAMFVLGVSAWYLLKKRDTDFALRSFAVAAGFGLASTLCVIVLGDESG 244 Query: 246 YTAGEVNKVKLAAIEAEWDTHPAPAGLTLFGLPNDKEERTDYAVKIPYVLGLIATRSADT 305 YT GEV K+KLAAIE+EW+T PAPA TL GLPN EERTDYA+KIPY LGLI TRS D Sbjct: 245 YTTGEVQKMKLAAIESEWETQPAPASFTLIGLPNQAEERTDYAIKIPYALGLIVTRSIDE 304 Query: 306 QVLGIKDLKKEHEARIRNGMLAYAALAKLKAGDKSPEARAEFDKLKKDLGYGLLLKKYTN 365 V+G+++L K E I++GM+AY AL KLKAGD S E +A FD+ K+ LGYGL+LK++T Sbjct: 305 PVIGLRELAKRSEEHIQSGMVAYGALQKLKAGDTSAETKATFDQHKQYLGYGLMLKQFTQ 364 Query: 366 NVVDATPEQISLAVNDTIPKVAPLFWSFRGMVALGFLFLFIFSASFWFLAKKQLAP--QR 423 NV DATP+QI A TIP VAP+F+SFR MV LGFLFL F A+FWF A++QL +R Sbjct: 365 NVTDATPDQIKAAAKQTIPPVAPVFFSFRIMVFLGFLFLATFIAAFWFCARRQLLQDNRR 424 Query: 424 WLLRLAVISIPLPWIAAELGWIVAEYGRQPWTIAGILPTHLSASSLQPGSLYFSLAGFIL 483 W LR AV +IPLPW+AAE GW+VAE GRQPWTIAGILPTHLSASSL LY SLAGFIL Sbjct: 425 WFLRYAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLTSTDLYLSLAGFIL 484 Query: 484 FYTFLLVVEMILMVKYARLGPSSLHTGQYHWE 515 FYT L ++E+ LM KYARLGPSSLHTG+YH E Sbjct: 485 FYTALFIIEITLMFKYARLGPSSLHTGRYHHE 516