BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3676.p         (91 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776452.1| hypothetical protein Hsero_3056 [Herbaspiril...    99   1e-19

>ref|YP_003776452.1| hypothetical protein Hsero_3056 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64544.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 84

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/81 (83%), Positives = 72/81 (88%)

Query: 11 PWRWPRLTQLPLGVEITLLLLVKIALITVLAKTFFAHPEAKHMQMPVQRVEQRMLSFTTP 70
          P + PRLTQLPLGVEITLLL++KIALITVLAKTFFAHPEAKHMQMPVQ VEQRMLSF  P
Sbjct: 4  PRKLPRLTQLPLGVEITLLLVIKIALITVLAKTFFAHPEAKHMQMPVQSVEQRMLSFAPP 63

Query: 71 QPATAQQQYQHQDLSAKQQTE 91
            AT QQ+YQHQDLSAKQQ E
Sbjct: 64 PAATPQQRYQHQDLSAKQQPE 84