BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3675.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776451.1| transcription regulator protein [Herbaspiril... 311 3e-83 ref|YP_004753410.1| hypothetical protein CFU_2760 [Collimonas fu... 293 9e-78 ref|NP_522802.1| hypothetical protein RS03185 [Ralstonia solanac... 246 1e-63 ref|YP_003748548.1| ArsR family transcriptional regulator [Ralst... 246 2e-63 emb|CCA86852.1| putative transcriptional regulator arsR family,w... 245 3e-63 >ref|YP_003776451.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64543.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 189 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 167/189 (88%), Positives = 180/189 (95%) Query: 1 MENNVLSPMMQRFISHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNV 60 MEN LSP+MQRFI HFGEMGSRWGINRTVGQIYALLYICGRALNADEIA+YLSFSRSNV Sbjct: 1 MENQALSPLMQRFIGHFGEMGSRWGINRTVGQIYALLYICGRALNADEIADYLSFSRSNV 60 Query: 61 SMGLKELQSWRLVKLLHKPGDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALL 120 SMGLKELQSWRLVKLLHKP DRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALL Sbjct: 61 SMGLKELQSWRLVKLLHKPNDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALL 120 Query: 121 EAPGSKDDKEVQKRMRDMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKF 180 E G+KDDK+VQ+RMR+MYELIELSSSWFD+VQRLSPETLVSLMKMG+KVKKLLDVR+KF Sbjct: 121 EPAGNKDDKQVQQRMREMYELIELSSSWFDEVQRLSPETLVSLMKMGAKVKKLLDVREKF 180 Query: 181 RVGGSSNEK 189 R+G +++ Sbjct: 181 RLGSHPDKE 189 >ref|YP_004753410.1| hypothetical protein CFU_2760 [Collimonas fungivorans Ter331] gb|AEK62587.1| hypothetical protein CFU_2760 [Collimonas fungivorans Ter331] Length = 215 Score = 293 bits (750), Expect = 9e-78, Method: Composition-based stats. Identities = 154/183 (84%), Positives = 168/183 (91%) Query: 6 LSPMMQRFISHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLK 65 L+P+ QRFISHFGEMGSRWGINRTVGQIYALLY+ G+ LNAD+IA+YL+FSRSNVSMGLK Sbjct: 17 LTPLTQRFISHFGEMGSRWGINRTVGQIYALLYVLGQPLNADQIADYLTFSRSNVSMGLK 76 Query: 66 ELQSWRLVKLLHKPGDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEAPGS 125 ELQSWRLVKLLH+PGDRREYFEPP DIWDIFK LLEERRRREIEPTLSMLRDALLE P + Sbjct: 77 ELQSWRLVKLLHQPGDRREYFEPPKDIWDIFKTLLEERRRREIEPTLSMLRDALLENPAN 136 Query: 126 KDDKEVQKRMRDMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKFRVGGS 185 DK+ Q+RMR+MY LIELSSSWFDDVQRLSPETL SLMKMGSKVKKLLDVRDKFRVG Sbjct: 137 DTDKQAQQRMREMYNLIELSSSWFDDVQRLSPETLASLMKMGSKVKKLLDVRDKFRVGSG 196 Query: 186 SNE 188 ++ Sbjct: 197 GSK 199 >ref|NP_522802.1| hypothetical protein RS03185 [Ralstonia solanacearum GMI1000] emb|CAD18392.1| probable cog1510, predicted transcriptional regulators protein [Ralstonia solanacearum GMI1000] Length = 186 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 122/183 (66%), Positives = 148/183 (80%), Gaps = 2/183 (1%) Query: 6 LSPMMQRFISHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLK 65 LSP+ QRF+ HFGEMGSRWGINRTVGQIYALLY +NADEIAE L FSRSNVS+GLK Sbjct: 3 LSPLKQRFVLHFGEMGSRWGINRTVGQIYALLYASREPINADEIAEALGFSRSNVSIGLK 62 Query: 66 ELQSWRLVKLLHKPGDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEAPGS 125 EL+SW+LV+L HKPGDRREYF P DIW IF+ L EERR+REI+PTLS+LRD +LE+PG Sbjct: 63 ELESWKLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPGD 122 Query: 126 KDDKEVQKRMRDMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKFR--VG 183 DD+ Q RM++MY LI L ++WFDDVQ+L + L LMKMG+KV+KLL++++K VG Sbjct: 123 PDDRHAQARMKEMYRLITLVTTWFDDVQKLDADALQQLMKMGAKVQKLLEMKNKLAVVVG 182 Query: 184 GSS 186 G S Sbjct: 183 GKS 185 >ref|YP_003748548.1| ArsR family transcriptional regulator [Ralstonia solanacearum CFBP2957] emb|CBJ54164.1| putative transcriptional regulator arsR family, winged helix repressor DNA-binding domain [Ralstonia solanacearum CFBP2957] Length = 186 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 121/183 (66%), Positives = 148/183 (80%), Gaps = 2/183 (1%) Query: 6 LSPMMQRFISHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLK 65 LSP+ QRF+ HFGEMGSRWGINRTVGQIYALLY +NADEIAE L FSRSNVS+GLK Sbjct: 3 LSPLKQRFVLHFGEMGSRWGINRTVGQIYALLYAAREPINADEIAEALGFSRSNVSIGLK 62 Query: 66 ELQSWRLVKLLHKPGDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEAPGS 125 EL+SW+LV+L HKPGDRREYF P DIW IF+ L EERR+REI+PTLS+LRD +LE+P Sbjct: 63 ELESWKLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPSD 122 Query: 126 KDDKEVQKRMRDMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKFR--VG 183 DD+ Q RM++MY+LI L ++WFDDVQ+L + L LMKMG+KV+KLL++++K VG Sbjct: 123 PDDRHAQARMKEMYQLITLVTTWFDDVQKLDADALQQLMKMGAKVQKLLEMKNKLAVVVG 182 Query: 184 GSS 186 G S Sbjct: 183 GKS 185 >emb|CCA86852.1| putative transcriptional regulator arsR family,winged helix repressor DNA-binding domain [Ralstonia syzygii R24] Length = 192 Score = 245 bits (625), Expect = 3e-63, Method: Composition-based stats. Identities = 121/183 (66%), Positives = 148/183 (80%), Gaps = 2/183 (1%) Query: 6 LSPMMQRFISHFGEMGSRWGINRTVGQIYALLYICGRALNADEIAEYLSFSRSNVSMGLK 65 LSP+ QRF+ HFGEMGSRWGINRTVGQIYALLY +NADEIAE L FSRSNVS+GLK Sbjct: 9 LSPLKQRFVLHFGEMGSRWGINRTVGQIYALLYASREPINADEIAEALGFSRSNVSIGLK 68 Query: 66 ELQSWRLVKLLHKPGDRREYFEPPGDIWDIFKVLLEERRRREIEPTLSMLRDALLEAPGS 125 EL+SW+LV+L HKPGDRREYF P DIW IF+ L EERR+REI+PTLS+LRD +LE+P Sbjct: 69 ELESWKLVRLTHKPGDRREYFSAPDDIWTIFRTLAEERRKREIDPTLSLLRDVMLESPAD 128 Query: 126 KDDKEVQKRMRDMYELIELSSSWFDDVQRLSPETLVSLMKMGSKVKKLLDVRDKFR--VG 183 DD+ Q RM++MY+LI L ++WFDDVQ+L + L LMKMG+KV+KLL++++K VG Sbjct: 129 PDDRHAQARMKEMYQLITLVTTWFDDVQKLDVDALQQLMKMGAKVQKLLEMKNKLAVVVG 188 Query: 184 GSS 186 G S Sbjct: 189 GKS 191