BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3672.p         (223 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component...   409   e-112
ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia x...   361   5e-98
ref|YP_001888667.1| two component heavy metal response winged he...   358   4e-97
ref|YP_003607270.1| transcriptional regulator [Burkholderia sp. ...   338   4e-91
ref|ZP_03265149.1| two component heavy metal response transcript...   338   5e-91

>ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64540.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  409 bits (1050), Expect = e-112,   Method: Composition-based stats.
 Identities = 215/223 (96%), Positives = 220/223 (98%)

Query: 1   MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGSDGLHMALEQDYDLVVLDVMLPGLDGW 60
           MAILVIEDDPKTGDYLRKGLRESGYAVDLAR G+DGLHMALEQDYDLVVLDVMLPGLDGW
Sbjct: 1   MAILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLPGLDGW 60

Query: 61  QVMSALRSKRDLPVLFLTAKDQVEDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120
           QVMSALRSKRDLPVLFLTA+D V+DRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT
Sbjct: 61  QVMSALRSKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120

Query: 121 REAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRTVIASQIWDM 180
           REAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSR+VIASQIWDM
Sbjct: 121 REAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDM 180

Query: 181 NFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSENP 223
           NFDSDTNVVDVAIKRLRAKIDAPF+KKLIHTVRSVGYMFSE P
Sbjct: 181 NFDSDTNVVDVAIKRLRAKIDAPFDKKLIHTVRSVGYMFSEEP 223


>ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 ref|ZP_06842747.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
 gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gb|EFG69706.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
          Length = 223

 Score =  361 bits (926), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 184/221 (83%), Positives = 208/221 (94%)

Query: 1   MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGSDGLHMALEQDYDLVVLDVMLPGLDGW 60
           M+ILVIEDDPKTGDYL+KGLRESGYAVDLARTG+DGLHMALE  YDLVVLDVMLPG+DGW
Sbjct: 1   MSILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGW 60

Query: 61  QVMSALRSKRDLPVLFLTAKDQVEDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120
           ++M ALR++RDLPV+FLTA+D V DRIRGL+LGADDYLVKPFSFTELVLRIRTLLRRGVT
Sbjct: 61  EIMRALRARRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVT 120

Query: 121 REAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRTVIASQIWDM 180
           RE++V+EIADL+LD +R KVTR+GV I LTNKEFMLLHLL++RQGEALSRT IAS++WDM
Sbjct: 121 RESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDM 180

Query: 181 NFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSE 221
           NFDSDTNVVDVAIKRLRAK+D PFEKKLIHTVRS+GY F +
Sbjct: 181 NFDSDTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTFGD 221


>ref|YP_001888667.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gb|ACD19297.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 223

 Score =  358 bits (919), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 183/221 (82%), Positives = 206/221 (93%)

Query: 1   MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGSDGLHMALEQDYDLVVLDVMLPGLDGW 60
           M ILVIEDDPKTGDYL+KGLRESGYAVDLARTG+DGLHMALE  YDLVVLDVMLPG+DGW
Sbjct: 1   MTILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGW 60

Query: 61  QVMSALRSKRDLPVLFLTAKDQVEDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120
           ++M ALR++RDLPV+FLTA+D V DRIRGL+LGADDYLVKPFSFTELVLRIRTLLRRGV 
Sbjct: 61  EIMRALRTRRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVI 120

Query: 121 REAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRTVIASQIWDM 180
           RE++V+EIADL+LD +R KVTR+GV I LTNKEFMLLHLL++RQGEALSRT IAS++WDM
Sbjct: 121 RESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDM 180

Query: 181 NFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSE 221
           NFDSDTNVVDVAIKRLRAK+D PFEKKLIHTVRS+GY F +
Sbjct: 181 NFDSDTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTFGD 221


>ref|YP_003607270.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gb|ADG17759.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 223

 Score =  338 bits (867), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 177/222 (79%), Positives = 210/222 (94%)

Query: 1   MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGSDGLHMALEQDYDLVVLDVMLPGLDGW 60
           M+ILVIEDDPKTGDYL+KGLRE+GYAVDLARTG+DGLH+ALE DY+LVVLDVMLPG+DGW
Sbjct: 1   MSILVIEDDPKTGDYLKKGLRENGYAVDLARTGTDGLHLALEHDYELVVLDVMLPGIDGW 60

Query: 61  QVMSALRSKRDLPVLFLTAKDQVEDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120
           ++M ALR++RDL V+FLTA+DQV DRIRGL+LGADDYLVKPFSFTELVLRIRTLLRRGV 
Sbjct: 61  EIMRALRARRDLRVIFLTARDQVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVI 120

Query: 121 REAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRTVIASQIWDM 180
           RE++V+E+ADL+LD +R +VTR+GV+I LTNKEFMLLHLL++R+GEALSR+ IAS++WDM
Sbjct: 121 RESDVFEVADLKLDVLRRRVTREGVDIPLTNKEFMLLHLLVRREGEALSRSQIASEVWDM 180

Query: 181 NFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSEN 222
           NFDSDTNVVDVAIKRLRAK+D PFEKKLIHTVRS+GY F ++
Sbjct: 181 NFDSDTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTFGDS 222


>ref|ZP_03265149.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. H160]
 gb|EEA03227.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. H160]
          Length = 223

 Score =  338 bits (866), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 177/221 (80%), Positives = 209/221 (94%)

Query: 1   MAILVIEDDPKTGDYLRKGLRESGYAVDLARTGSDGLHMALEQDYDLVVLDVMLPGLDGW 60
           M+ILVIEDDPKTGDYL+KGLRE+GYAVDLARTG+DGLH+ALE DY+LVVLDVMLPG+DGW
Sbjct: 1   MSILVIEDDPKTGDYLKKGLRENGYAVDLARTGTDGLHLALEHDYELVVLDVMLPGIDGW 60

Query: 61  QVMSALRSKRDLPVLFLTAKDQVEDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120
           ++M ALR++RDL V+FLTA+DQV DRIRGL+LGADDYLVKPFSFTELVLRIRTLLRRGV 
Sbjct: 61  EIMRALRARRDLRVIFLTARDQVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVI 120

Query: 121 REAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRTVIASQIWDM 180
           RE++V+E+ADL+LD +R +VTR+GV+I LTNKEFMLLHLL++R+GEALSR+ IAS++WDM
Sbjct: 121 RESDVFEVADLKLDVLRRRVTREGVDIPLTNKEFMLLHLLVRREGEALSRSQIASEVWDM 180

Query: 181 NFDSDTNVVDVAIKRLRAKIDAPFEKKLIHTVRSVGYMFSE 221
           NFDSDTNVVDVAIKRLRAK+D PFEKKLIHTVRS+GY F +
Sbjct: 181 NFDSDTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTFGD 221