BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3669.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776445.1| peptide methionine sulfoxide reductase [Herb... 338 4e-91 ref|YP_782865.1| methionine sulfoxide reductase A [Rhodopseudomo... 268 6e-70 ref|NP_773683.1| methionine sulfoxide reductase A [Bradyrhizobiu... 265 3e-69 ref|ZP_07025183.1| peptide methionine sulfoxide reductase [Afipi... 265 5e-69 ref|YP_549555.1| peptide methionine sulfoxide reductase [Polarom... 263 1e-68 >ref|YP_003776445.1| peptide methionine sulfoxide reductase [Herbaspirillum seropedicae SmR1] gb|ADJ64537.1| peptide methionine sulfoxide reductase protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 338 bits (867), Expect = 4e-91, Method: Composition-based stats. Identities = 195/233 (83%), Positives = 211/233 (90%), Gaps = 5/233 (2%) Query: 1 MSLFKPAVLASAASLCLALAC-ASTFAAEAAVAVPAPSGKAVLASTANTATVVLAGGCFW 59 MS FKPAVLA LCLAL+ A+ AAE AVAVPAP GKA+LA++A T T+VLAGGCFW Sbjct: 1 MSRFKPAVLA----LCLALSTLAAAHAAERAVAVPAPVGKALLAASAPTETLVLAGGCFW 56 Query: 60 GVQGVFQHTQGVLQAVSGYAGGKADSATYSMVSSGTTGHAEAVQVTYDPRKISYGQILQI 119 GVQGVFQHTQGVL+AVSGYAGGKAD+ATY+MVSSG+TGHAEAVQVTYDPRKIS+GQ+LQI Sbjct: 57 GVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDPRKISFGQLLQI 116 Query: 120 YFSVAHDPTQLNRQGPDHGTQYRSAIFTASEDQARATQAYIAQINAAKVFSAPIVTQVTP 179 YFSVAHDPTQLNRQGPD GTQYRSAIFTA+E Q A QAYIAQ+NAAKV+ APIVTQVT Sbjct: 117 YFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKVYGAPIVTQVTA 176 Query: 180 LQGFYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMYPAIYRADPVLVFKR 232 LQGFY AEDYHQDYATLHPNQPYIAYNDLPKI NLQKMYPA+YRADPVLVFKR Sbjct: 177 LQGFYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMYPALYRADPVLVFKR 229 >ref|YP_782865.1| methionine sulfoxide reductase A [Rhodopseudomonas palustris BisA53] gb|ABJ07885.1| peptide methionine sulfoxide reductase [Rhodopseudomonas palustris BisA53] Length = 237 Score = 268 bits (684), Expect = 6e-70, Method: Composition-based stats. Identities = 134/204 (65%), Positives = 163/204 (79%), Gaps = 2/204 (0%) Query: 26 AAEAAVAVPAPSGKAVLASTANTATVVLAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADS 85 A+E AV +PAP+ +A+ T VLAGGCFWGVQGVFQHT GV+ AVSGYAGG + Sbjct: 29 ASEEAVVIPAPA--VDVAAKDGLQTAVLAGGCFWGVQGVFQHTAGVVNAVSGYAGGSKLT 86 Query: 86 ATYSMVSSGTTGHAEAVQVTYDPRKISYGQILQIYFSVAHDPTQLNRQGPDHGTQYRSAI 145 A Y+ VS+G T HAEAV++TYDP++ISYG++LQIYFSVAHDPTQLNRQGPD GTQYRS I Sbjct: 87 ANYTAVSTGVTSHAEAVEITYDPKQISYGKLLQIYFSVAHDPTQLNRQGPDSGTQYRSEI 146 Query: 146 FTASEDQARATQAYIAQINAAKVFSAPIVTQVTPLQGFYRAEDYHQDYATLHPNQPYIAY 205 FT +++Q R +AYIAQ++AAK + PIVT++ PLQGFY AEDYHQDY TLHPNQPYIA+ Sbjct: 147 FTVTDEQKRVAEAYIAQLDAAKAYKKPIVTKIGPLQGFYAAEDYHQDYLTLHPNQPYIAF 206 Query: 206 NDLPKISNLQKMYPAIYRADPVLV 229 ND PKI NL+K++ +R P LV Sbjct: 207 NDRPKIDNLKKIFTQDFRDKPTLV 230 >ref|NP_773683.1| methionine sulfoxide reductase A [Bradyrhizobium japonicum USDA 110] dbj|BAC52308.1| peptide methionine sulfoxide reductase [Bradyrhizobium japonicum USDA 110] Length = 234 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 142/204 (69%), Positives = 162/204 (79%), Gaps = 2/204 (0%) Query: 26 AAEAAVAVPAPSGKAVLASTANTATVVLAGGCFWGVQGVFQHTQGVLQAVSGYAGGKADS 85 AAE AV +PAP+ A AS TA V+AGGCFWGVQGVFQHT GV+ AVSGYAGG + Sbjct: 26 AAEDAVVIPAPTMDAAPASGIQTA--VIAGGCFWGVQGVFQHTAGVVNAVSGYAGGTKAT 83 Query: 86 ATYSMVSSGTTGHAEAVQVTYDPRKISYGQILQIYFSVAHDPTQLNRQGPDHGTQYRSAI 145 A Y VSSG TGHAE+V++ YDP+KISYG+ILQIYFSVAHDPTQLNRQGPD GTQYRSAI Sbjct: 84 ADYQTVSSGRTGHAESVEIKYDPKKISYGKILQIYFSVAHDPTQLNRQGPDTGTQYRSAI 143 Query: 146 FTASEDQARATQAYIAQINAAKVFSAPIVTQVTPLQGFYRAEDYHQDYATLHPNQPYIAY 205 FT SE+Q + +AYIAQ+N AKVFS PIVT+V L+ FY AE YHQDY TLHPNQPYIAY Sbjct: 144 FTTSEEQKKVAEAYIAQLNGAKVFSKPIVTKVGALEAFYPAEAYHQDYLTLHPNQPYIAY 203 Query: 206 NDLPKISNLQKMYPAIYRADPVLV 229 NDLPK+ NL+K++ Y P LV Sbjct: 204 NDLPKVENLKKLFADNYIEKPTLV 227 >ref|ZP_07025183.1| peptide methionine sulfoxide reductase [Afipia sp. 1NLS2] gb|EFI52325.1| peptide methionine sulfoxide reductase [Afipia sp. 1NLS2] Length = 241 Score = 265 bits (676), Expect = 5e-69, Method: Composition-based stats. Identities = 128/209 (61%), Positives = 166/209 (79%), Gaps = 2/209 (0%) Query: 23 STFAAEAAVAVPAPSGKAVL--ASTANTATVVLAGGCFWGVQGVFQHTQGVLQAVSGYAG 80 S+ A+ +P P A+++ ++VLAGGCFWGVQGV+QHT+GVLQAVSGYAG Sbjct: 26 SSRASAEPFIIPPPKTDVATNTATSSEPRSIVLAGGCFWGVQGVYQHTKGVLQAVSGYAG 85 Query: 81 GKADSATYSMVSSGTTGHAEAVQVTYDPRKISYGQILQIYFSVAHDPTQLNRQGPDHGTQ 140 G ADSA Y VS+G+TGHAE+V++TYDP++I+ G+ILQIYFSV HDPTQLNRQGPD GTQ Sbjct: 86 GSADSARYDTVSTGSTGHAESVKITYDPKQINLGKILQIYFSVVHDPTQLNRQGPDSGTQ 145 Query: 141 YRSAIFTASEDQARATQAYIAQINAAKVFSAPIVTQVTPLQGFYRAEDYHQDYATLHPNQ 200 YRSAIFT+ ++ + + YIA++NAAK++ PIVT++ P+ GFY AE+YHQDY TLHP Q Sbjct: 146 YRSAIFTSQPEEQKIAKDYIAELNAAKIYKRPIVTKIEPMNGFYPAENYHQDYLTLHPYQ 205 Query: 201 PYIAYNDLPKISNLQKMYPAIYRADPVLV 229 PYIA+ND+PK+ NL+K++ A YR PVLV Sbjct: 206 PYIAFNDIPKVDNLKKLFAADYRDKPVLV 234 >ref|YP_549555.1| peptide methionine sulfoxide reductase [Polaromonas sp. JS666] gb|ABE44657.1| peptide methionine sulfoxide reductase [Polaromonas sp. JS666] Length = 242 Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats. Identities = 143/231 (61%), Positives = 171/231 (74%), Gaps = 4/231 (1%) Query: 3 LFKPAVLASAASLCLALACASTFAAEAAVAVPAPS----GKAVLASTANTATVVLAGGCF 58 L +A AA + + + A E AV +PAP+ A A +AT V AGGCF Sbjct: 7 LLTLGAVALAAWVFVGGGMGVSSAEEKAVKLPAPAMDMPATAQAGPQAGSATAVFAGGCF 66 Query: 59 WGVQGVFQHTQGVLQAVSGYAGGKADSATYSMVSSGTTGHAEAVQVTYDPRKISYGQILQ 118 WGVQ VFQHTQGVL AVSGYAGG+ +A+Y M+ SG TGHAE+VQ+TYDP+KISYG++LQ Sbjct: 67 WGVQAVFQHTQGVLNAVSGYAGGEKATASYEMIGSGRTGHAESVQITYDPKKISYGKLLQ 126 Query: 119 IYFSVAHDPTQLNRQGPDHGTQYRSAIFTASEDQARATQAYIAQINAAKVFSAPIVTQVT 178 IYFSVAHDPT LNRQGPD GTQYRSA+F +Q + T++YIAQ++AAKVF IVTQ+T Sbjct: 127 IYFSVAHDPTTLNRQGPDSGTQYRSAVFYQDANQKKVTESYIAQLDAAKVFPNKIVTQLT 186 Query: 179 PLQGFYRAEDYHQDYATLHPNQPYIAYNDLPKISNLQKMYPAIYRADPVLV 229 PL GFY AE YHQDYATLHPNQPYIA DLPKI+NL+ + P +YR PVLV Sbjct: 187 PLNGFYPAEAYHQDYATLHPNQPYIARFDLPKIANLKTVMPEVYRDKPVLV 237