BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3668.p (570 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillu... 738 0.0 ref|YP_004752006.1| TPR repeat protein [Collimonas fungivorans T... 378 e-102 ref|YP_001859985.1| TPR repeat-containing protein [Burkholderia ... 276 5e-72 ref|YP_003604650.1| hypothetical protein [Burkholderia sp. CCGE1... 267 3e-69 ref|YP_003023607.1| hypothetical protein GM21_3832 [Geobacter sp... 267 4e-69 >ref|YP_003776444.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ64536.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 570 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 412/565 (72%), Positives = 464/565 (82%), Gaps = 1/565 (0%) Query: 1 MNATDTVRLALDHFHQDDYAAAEQVLFGLLETHPRHKDALQLLGSVVAAQGRFEEAALAW 60 MN TDT++LAL HF Q+DYA A+ +LF LL+ HPR KDAL LLGSV AAQGRF EAALAW Sbjct: 1 MNPTDTLKLALSHFDQEDYAEAQALLFALLDAHPRDKDALHLLGSVAAAQGRFAEAALAW 60 Query: 61 QQALPLVDPDSEEALALRYRLGRAFYEQGRYEDSFLLYRDLIEAGHERPEFFVAASAALQ 120 QQAL L+ PDSEEALALRYRLGRAFYE+GR+ED+FLLYR+LIE+G + PE FVAA+AALQ Sbjct: 61 QQALRLLPPDSEEALALRYRLGRAFYEEGRFEDAFLLYRELIESGWQLPELFVAAAAALQ 120 Query: 121 GMSPSGKNDGQALALLEEALRRNPDVPDTWHRKARLHERAGQWEAARECLRQVLLRFDDR 180 GMSPSGKND QALALLEEAL+R+P DTWHRKA LHERA QW+AAR+C+ Q L D R Sbjct: 121 GMSPSGKNDPQALALLEEALQRDPGQADTWHRKAALHERARQWDAARQCIHQALRLDDQR 180 Query: 181 AQYWLDAGLIEHALGDYEEALRYYDRALILDPDLVDAHVSRGTTLARLREHEDAIDSYRR 240 AQYWL AGL+EHA G +EEALRYYD+ALIL P+LVDAHVSRGTTLARLR+HE+AIDSYRR Sbjct: 181 AQYWLAAGLVEHAQGQFEEALRYYDQALILAPELVDAHVSRGTTLARLRQHEEAIDSYRR 240 Query: 241 ALRIDGSDADAHLNLALSLLALGRLEEALPLYEWRWEGRGADPYRHAAIPPWNGGSSLAG 300 ALRID DADAHLNLALSLL LGRLE+A PLYEWRWEGR ADPYRHA IP WNGGSSLAG Sbjct: 241 ALRIDDKDADAHLNLALSLLVLGRLEQAWPLYEWRWEGRSADPYRHATIPAWNGGSSLAG 300 Query: 301 KRILLWAEQGQGDTIQFSRYVQQIVEAGAEVVFEVPESLFTLMQGLPVASRIQLVPTAGA 360 KRILLWAEQGQGDTIQFSRYV I++AGA+VV EVP SL LM L V + + LV Sbjct: 301 KRILLWAEQGQGDTIQFSRYVALILQAGAQVVLEVPASLLALMHSLAVPTPLTLVAMGEP 360 Query: 361 LPAIDYQLPLMSLPLVCNTATDNIPAPVPYLNVHIDLKRQWEQQIDALAPRAPGQVRVGI 420 LP +D+QLPLMSLPLVCNT D+IPA VPYL + WE+++ LAPR+P ++R+G+ Sbjct: 361 LPEVDFQLPLMSLPLVCNTRADDIPAAVPYLCADPARRILWEERLATLAPRSPARMRIGL 420 Query: 421 ICSGNPGNANDARRSIALERFAALAKARDGVSFFIIQPDLRTADAQWLQQAGPQWHAVGE 480 +CSGN GN NDARRSI L RFA LA AR + FF+IQPDLR AD QW +Q P WH VG Sbjct: 421 VCSGNAGNVNDARRSIELSRFAPLALARPQLDFFVIQPDLRQADRQWCEQQ-PGWHWVGA 479 Query: 481 GIRDFADTAAALSCMDLVISVDTAAAHLAGALGLPVWIALPYSPDWRWFLQRHDSPWYPT 540 I DFADTAA L+ MDLVISVDTAAAHLAGA+ PVWIALPY+PDWRW L DSPWYPT Sbjct: 480 AINDFADTAAVLAGMDLVISVDTAAAHLAGAMACPVWIALPYAPDWRWLLNAADSPWYPT 539 Query: 541 ARLFRQQRAGDWDEVITTLRAALAV 565 ARLFRQQ+ G WD+VI TLRAALAV Sbjct: 540 ARLFRQQQPGAWDDVILTLRAALAV 564 >ref|YP_004752006.1| TPR repeat protein [Collimonas fungivorans Ter331] gb|AEK61183.1| TPR repeat protein [Collimonas fungivorans Ter331] Length = 624 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 228/593 (38%), Positives = 323/593 (54%), Gaps = 43/593 (7%) Query: 1 MNATDTVRLALDHFHQDDYAAAEQVLFGLLETHPRHKDALQLLGSVVAAQGRFEEAALAW 60 M+ ++ A F + A AE+ L +L + P++ DAL +LG + AA G+ EA + Sbjct: 22 MSTMHLIQQAYKDFQNGNTAHAERSLKDILTSQPKNFDALHILGVICAATGQRSEAVQLF 81 Query: 61 QQALPLVDPDSEEALALRYRLGRAFYEQGRYEDSFLLYRDLIEAGHERPEFFVAASAAL- 119 QAL L D + ++L Y+L R +E ++E + Y +I G+ +PE +A + L Sbjct: 82 GQALALDDKN----VSLYYKLARVQFESDQFEAALRAYEKIIALGYVKPEILLAKAVTLL 137 Query: 120 -----------------------QGMSPSG------KNDGQALALLEEALRRNPDVPDTW 150 G + G + +AL + AL P + D W Sbjct: 138 SLQRRREALECIEQTLAAWPDYADGWAHKGALLYQLQQHEEALVHFDRALALQPAMADGW 197 Query: 151 HRKARLHERAGQWEAARECLRQVLLRFDDRAQYWLDAGLIEHALGDYEEALRYYDRALIL 210 ++K+ ++ ++ A L + + A YWLD +I H L Y E+L + L L Sbjct: 198 YKKSLALDKLERYADALASLDRAIALAPKTAAYWLDRAVILHKLERYAESLSDNETGLAL 257 Query: 211 DPDLVDAHVSRGTTLARLREHEDAIDSYRRALRIDGSDADAHLNLALSLLALGRLEEALP 270 P +A G TL+R+ H+ A+DSY+RA+ + ADA N +LS L LG+ E Sbjct: 258 APGNAEAWGDHGLTLSRMNRHQQALDSYQRAIGLQAGYADALSNQSLSQLVLGQFEAGWQ 317 Query: 271 LYEWRWEGRGADPYRHAAIPPWNGGSSLAGKRILLWAEQGQGDTIQFSRYVQQIVEAGAE 330 YE+RW+ AD RH IP W G ++ GKRILLW+EQG GDTIQF RY + GAE Sbjct: 318 SYEYRWKKGNADFPRHTEIPLWLGRQAIGGKRILLWSEQGLGDTIQFCRYAMLVAALGAE 377 Query: 331 VVFEVPESLFTLMQGLPVASRIQLVPTAGALPAIDYQLPLMSLPLVCNTATDNIPAPVPY 390 VV EV +L T+ Q + Q++ +DYQ PLMSLPLV T IPAP Y Sbjct: 378 VVLEVDPALKTITQTM---GNFQVIAIGEEFAPVDYQTPLMSLPLVFKTELATIPAPPSY 434 Query: 391 LNVHIDLKRQWEQQIDALAPRAPGQVRVGIICSGNPGNANDARRSIALERFAALAKARDG 450 K W ++ D A G++++G++ SGN GN ND RRS+ L+ FA L + +G Sbjct: 435 FTADAGKKESWRKRQDF----AGGKLKIGLVGSGNAGNTNDHRRSMPLQEFAPLLQL-EG 489 Query: 451 VSFFIIQPDLRTADAQWLQQAGPQWHAVGEGIRDFADTAAALSCMDLVISVDTAAAHLAG 510 FF++Q D+R +D ++QQ W V I DF DTAA ++ +DLVISVDT+ AHL+G Sbjct: 490 ADFFLVQKDIRASDHAYVQQTPKLW-VVAHDIADFDDTAAIIANLDLVISVDTSVAHLSG 548 Query: 511 ALGLPVWIALPYSPDWRWFLQRHDSPWYPTARLFRQQRAGDWDEVITTLRAAL 563 ALG+PVWI LP+ PDWRW L R DSPWYP+ARLFRQ++ GDW VI + +AL Sbjct: 549 ALGVPVWILLPWVPDWRWLLDREDSPWYPSARLFRQEQTGDWQGVIERVMSAL 601 >ref|YP_001859985.1| TPR repeat-containing protein [Burkholderia phymatum STM815] gb|ACC72939.1| TPR repeat-containing protein [Burkholderia phymatum STM815] Length = 578 Score = 276 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 200/551 (36%), Positives = 277/551 (50%), Gaps = 25/551 (4%) Query: 15 HQDDYAAAEQVLFGLLETHPRHKDALQLLGSVVAAQGRFEEAALAWQQALPLVDPDSEEA 74 H ++ AE + +L P+H DA+QLLG++ GR +E ++A+ + + Sbjct: 23 HNGAHSEAEDLYREILSLRPKHFDAIQLLGALSLQAGRVDEGIELLKKAIAI----NGMQ 78 Query: 75 LALRYRLGRAFYEQGRYEDSFLLYRDLIEAGHERPEFFVAASAALQGMSPSGKNDGQALA 134 AL L A+ Q R+ + + + AL G+ +ALA Sbjct: 79 AALHSNLAYAYNAQRRFNEGLASANRALALQANFADALNNRGNALAGLD----RPAEALA 134 Query: 135 LLEEALRRNPDVPDTWHRKARLHERAGQWEAARECLRQVLLRFDDRAQYWLDAGLIEHAL 194 E+A+ P + W+ A + + + A C + + A+ W + L Sbjct: 135 SFEKAIALQPALAQAWNNCACVLRDLDRPDDALACCDEAIALQAGYAEAWSNRANALSDL 194 Query: 195 GDYEEALRYYDRALILDPDLVDAHVSRGTTLARLREHEDAIDSYRRALRIDGSDADAHLN 254 +A Y RAL L P VDA + G T L++HE+A+ SY RAL ++ A+AH N Sbjct: 195 NRPLDAEASYRRALELAPSFVDARSNLGLTQIDLKQHEEALQSYERALALNPEHAEAHWN 254 Query: 255 LALSLLALGRLEEALPLYEWRWE-GRGADPYRHAAIPPWNGGSSLAGKRILLWAEQGQGD 313 AL LL +GRL+E YEWRW+ R RH P W G L GK ILL AEQG GD Sbjct: 255 RALCLLQMGRLDEGWQEYEWRWQRHRMQGAQRHVGQPLWLGQFPLEGKTILLHAEQGLGD 314 Query: 314 TIQFSRYVQQIVEAGAEVVFEVPESLFTLMQGLPVASRIQLVPTAGALPAIDYQLPLMSL 373 T+QF RYV + GA+V+ EVP+ L L++ L + +LV LP D PL+SL Sbjct: 315 TLQFCRYVPLVAAMGAKVILEVPQELVRLLRTLNGVA--ELVEQEQPLPPFDCHAPLLSL 372 Query: 374 PLVCNTATDNIPAPVPYLNVHIDLKRQWEQQIDALAPRAPGQVRVGIICSGNPGN----- 428 PL T DNIP+ PYL+ +W +++ + A RA ++VG++ +G GN Sbjct: 373 PLAFGTNVDNIPSRTPYLHPDESDTERWSERLASDASRA---LKVGLVWAG--GNRPHVA 427 Query: 429 ---ANDARRSIALERFAALAKARDGVSFFIIQPDLRTADAQWLQQAGPQWHAVGEGIRDF 485 DARRSIAL+ + V F+ +Q + + Q + + DF Sbjct: 428 ELRKTDARRSIALDMLVPILDTPH-VQFYSLQKGPASGQLRGNPQLAGRIVDYTDEFADF 486 Query: 486 ADTAAALSCMDLVISVDTAAAHLAGALGLPVWIALPYSPDWRWFLQRHDSPWYPTARLFR 545 ADTAA +S +DLVISVDTA AHLAGA G PVWI + WRW L R DSPWYP ARLFR Sbjct: 487 ADTAAFVSNLDLVISVDTAVAHLAGATGTPVWIMNRFDTCWRWLLDRTDSPWYPHARLFR 546 Query: 546 QQRAGDWDEVI 556 Q GDWD VI Sbjct: 547 QPTLGDWDSVI 557 >ref|YP_003604650.1| hypothetical protein [Burkholderia sp. CCGE1002] gb|ADG15139.1| TPR repeat-containing protein [Burkholderia sp. CCGE1002] Length = 579 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 206/560 (36%), Positives = 282/560 (50%), Gaps = 24/560 (4%) Query: 22 AEQVLFGLLETHPRHKDALQLLGSVVAAQGRFEEAALAWQQALPLVDPDSEEALALRYRL 81 AE++ +LE P+H DAL+ LG + GR +E ++AL L + A+ L Sbjct: 30 AEEMYREILELKPKHGDALRWLGELALQTGRLQEGVELLKKALAL----NARQPAVHSNL 85 Query: 82 GRAFYEQGRYEDSFLLYRDLIEAGHERPEFFVAASAALQGMSPSGKNDGQALALLEEALR 141 A R++++ + +P+F A + ++ S +ALA E AL Sbjct: 86 AYALNALQRHDEALACAERALVM---QPKFADALNNRGNALA-SLHRPLEALASYERALS 141 Query: 142 RNPDVPDTWHRKARLHERAGQWEAARECLRQVLLRFDDRAQYWLDAGLIEHALGDYEEAL 201 P+ W+ +A + G++ A + Q L D A W + G + L EA Sbjct: 142 LVPEFAPAWNNRACVLRDLGRYADALDSCDQALALQPDYADAWSNRGNVLGDLNQPHEAQ 201 Query: 202 RYYDRALILDPDLVDAHVSRGTTLARLREHEDAIDSYRRALRIDGSDADAHLNLALSLLA 261 R Y RAL L P VDA + G L + E A+ SY+RAL ++ + + H N AL LL Sbjct: 202 RCYQRALELAPGFVDAWNNLGLAQIDLNQREQALSSYQRALALNPASVETHWNQALCLLQ 261 Query: 262 LGRLEEALPLYEWRWEGRGADPYRHA-AIPPWNGGSSLAGKRILLWAEQGQGDTIQFSRY 320 +GR E YEWRWE R A A P W G L GK ILL AEQG GDT+QF RY Sbjct: 262 MGRFESGWREYEWRWERSRIKAGRRAFAQPLWLGDFPLDGKTILLHAEQGLGDTLQFCRY 321 Query: 321 VQQIVEAGAEVVFEVPESLFTLMQGLPVASRIQLVPTAGALPAIDYQLPLMSLPLVCNTA 380 + + GA+VV EVP L L+ L QL+ LP D PL+SLP +T Sbjct: 322 APLVAKLGAKVVLEVPGPLMRLLSTLDGVD--QLIEAGQPLPPFDCHCPLLSLPRAFSTD 379 Query: 381 TDNIPAPVPYLNVHIDLKRQWEQQIDALAP-----RAPGQVRVGIICSG-NPGNAN---- 430 +IPA PYL +W ++I++ A ++VG++ +G N + Sbjct: 380 EASIPAATPYLFAQPAAASEWRERIESNGNTNADGNAIQPLKVGLVWAGENRAHVAELRK 439 Query: 431 -DARRSIALERFAALAKARDGVSFFIIQPDLRTADAQWLQQAGPQWHAVGEGIRDFADTA 489 DARRS+A E+ A L + V FF +Q A A + E + DFADTA Sbjct: 440 IDARRSLAFEQLAPLLDVPN-VRFFSVQKGAAGAQLAASAYA-ERVADYTELLHDFADTA 497 Query: 490 AALSCMDLVISVDTAAAHLAGALGLPVWIALPYSPDWRWFLQRHDSPWYPTARLFRQQRA 549 A ++ +DLVISVDT+ AHLAGALG PVWI + WRW L+R D+PWYP+ARLFRQ + Sbjct: 498 ALVAGLDLVISVDTSTAHLAGALGKPVWILNRFDTCWRWLLERSDTPWYPSARLFRQPQL 557 Query: 550 GDWDEVITTLRAALAVASFS 569 G WD VI +R ALA S S Sbjct: 558 GAWDSVIDAVRGALADLSAS 577 >ref|YP_003023607.1| hypothetical protein GM21_3832 [Geobacter sp. M21] gb|ACT19849.1| TPR repeat-containing protein [Geobacter sp. M21] Length = 688 Score = 267 bits (682), Expect = 4e-69, Method: Composition-based stats. Identities = 198/523 (37%), Positives = 268/523 (51%), Gaps = 22/523 (4%) Query: 44 GSVVAAQGRFEEAALAWQQALPLVDPDSEEALALRYRLGRAFYEQGRYEDSFLLYRDLIE 103 G AA GR EA ++++A+ L PD A Y LG + Y GR ++ YR + Sbjct: 173 GCAEAAAGRHLEAVESYREAIALA-PDLMPA---HYNLGNSLYALGRIAEAAESYRWALA 228 Query: 104 AGHERPEFFVAASAALQGMSPSGKNDGQALALLEEALRRNPDVPDTWHRKARLHERAGQW 163 P+ + S AL+ G D +AL L ALR PD + H + LH G+ Sbjct: 229 LDPALPQGWHNLSLALKA---QGALD-EALHALRRALRIAPDYLEARHTQGELHHERGEL 284 Query: 164 EAARECLRQVLLRFDDRAQYWLDAGLIEHALGDYEEALRYYDRALILDPDLVDAHVSRGT 223 + A+ C R+ L R W G+ G EEA+ Y +AL L PD + A + GT Sbjct: 285 DEAQACFRENLSRDPGYLPSWNALGISLQLQGLLEEAVDCYQKALALKPDYLHALNNLGT 344 Query: 224 TLARLREHEDAIDSYRRALRIDGSDADAHLNLALSLLALGRLEEALPLYEWRWEGRGADP 283 L E A Y R L ID ADA NLAL L LG E YE R+ P Sbjct: 345 ASRSLGLLEQAKACYLRVLEIDEGYADARWNLALVQLQLGEYREGWQGYECRFSNVDPIP 404 Query: 284 YRHAAIPPWNGGSSLAGKRILLWAEQGQGDTIQFSRYVQQIVEAGAEVVFEV-PESLFTL 342 P W GGS L G+ ILL +EQG GDT QF RY + + + GA V+ + E++ + Sbjct: 405 RLEFPRPLWAGGS-LEGRTILLTSEQGFGDTFQFVRYAKLLAQGGATVLVQAQSEAIAPV 463 Query: 343 MQGLPVASRIQLVPTAGALPAIDYQLPLMSLPLVCNTATDNIPAPVPYLNVHIDLKRQWE 402 + +P +R+ + LP D PLMSLP +C T IPA +PYL L ++W Sbjct: 464 IATVPGVARVLV--RGEPLPEFDCHAPLMSLPYLCGTELACIPAEIPYLFADPALVKKW- 520 Query: 403 QQIDALAPRAPGQ-VRVGIICSGNPGNANDARRSIALERFAALAKARDGVSFFIIQPDLR 461 +P G+ +RVG++ +G +D +RS++L F L+K G FF +Q Sbjct: 521 ------SPLLSGERLRVGLVWAGRKSYKDDLKRSLSLPLFEPLSKVA-GADFFALQVG-D 572 Query: 462 TADAQWLQQAGPQWHAVGEGIRDFADTAAALSCMDLVISVDTAAAHLAGALGLPVWIALP 521 A+ + G + +G IR+FADTAA L+ +DLVI+ DTA AHLAG LG+P W+ LP Sbjct: 573 GAEQAAIPPPGVKLTDLGCNIRNFADTAAVLTRLDLVITADTAVAHLAGGLGVPAWVLLP 632 Query: 522 YSPDWRWFLQRHDSPWYPTARLFRQQRAGDWDEVITTLRAALA 564 DWRW +R DSPWYP ARLFRQ R GDW+EV+ + LA Sbjct: 633 VGCDWRWLAEREDSPWYPGARLFRQTRRGDWNEVLQRVADCLA 675 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 74/150 (49%), Positives = 99/150 (66%), Gaps = 6/150 (4%) Query: 416 VRVGIICSGNPGNANDARRSIALERFAALAKARDGVSFFIIQPDLRTADAQWLQQAGP-Q 474 ++V ++ GNP + NDA RSI L + A LA+ GVSF+ L+ +A + GP Sbjct: 1 MKVALVWRGNPAHGNDANRSIPLAKLAPLAEV-PGVSFY----SLQVGEAARAELPGPFP 55 Query: 475 WHAVGEGIRDFADTAAALSCMDLVISVDTAAAHLAGALGLPVWIALPYSPDWRWFLQRHD 534 + I DFADTAA +DLV+ VDT+ AHL GALG+PVW+ +P PDWRW L R D Sbjct: 56 IVDLAPHIEDFADTAALAGELDLVVCVDTSVAHLCGALGVPVWLLVPLVPDWRWGLYRDD 115 Query: 535 SPWYPTARLFRQQRAGDWDEVITTLRAALA 564 SPWYPT RLFRQ++AG+W+EV+ ++ ALA Sbjct: 116 SPWYPTLRLFRQRQAGEWEEVVARVKEALA 145 Score = 58.2 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 17/137 (12%) Query: 150 WHRKARL--HERAGQWEAARECLRQVLLR-------------FDDR--AQYWLDAGLIEH 192 W+ RL +AG+WE +++ L R D R A+ W + G E Sbjct: 118 WYPTLRLFRQRQAGEWEEVVARVKEALAREASPASVSPQALHADARGEAEIWNNRGCAEA 177 Query: 193 ALGDYEEALRYYDRALILDPDLVDAHVSRGTTLARLREHEDAIDSYRRALRIDGSDADAH 252 A G + EA+ Y A+ L PDL+ AH + G +L L +A +SYR AL +D + Sbjct: 178 AAGRHLEAVESYREAIALAPDLMPAHYNLGNSLYALGRIAEAAESYRWALALDPALPQGW 237 Query: 253 LNLALSLLALGRLEEAL 269 NL+L+L A G L+EAL Sbjct: 238 HNLSLALKAQGALDEAL 254