BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3666.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003695756.1| EAL domain-containing protein [Starkeya nove... 239 4e-61 ref|YP_003777118.1| signal transduction protein containing senso... 236 3e-60 gb|AAF83280.1|AE003897_5 conserved hypothetical protein [Xylella... 234 1e-59 ref|NP_297760.2| hypothetical protein XF0470 [Xylella fastidiosa... 234 1e-59 gb|EGO81550.1| signal transduction protein [Xylella fastidiosa E... 231 7e-59 >ref|YP_003695756.1| EAL domain-containing protein [Starkeya novella DSM 506] gb|ADH91137.1| EAL domain protein [Starkeya novella DSM 506] Length = 529 Score = 239 bits (609), Expect = 4e-61, Method: Composition-based stats. Identities = 129/263 (49%), Positives = 171/263 (65%), Gaps = 1/263 (0%) Query: 4 KAQFKRAIEREEFRVVYQPIVVLADGRCAGAEVLVRWQREDGALLPPDRFLAAAQRHGYL 63 + + A+ EF YQPI+ LA GRC GAE LVRW+R DG+L+ PD F+ A+ G++ Sbjct: 266 RGELALAVRNREFLAHYQPIIELATGRCIGAEALVRWRRPDGSLVRPDLFIPLAEETGFI 325 Query: 64 NAITDRVLQQTVSDLAPTLRAHRCLHAAVNIPAQDVNSGRILEVLDAALDGTGIVPAQLW 123 ITD V+++ V DL LR R LH A+N+ A D++SGRIL VL+AAL TGI P Q+W Sbjct: 326 GPITDHVVERVVDDLGDLLRRDRRLHIAINLGAADISSGRILPVLEAALADTGIEPQQIW 385 Query: 124 LEITESSSMETLPSRETLSRARERGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVIG 183 LE TE ++ +R TL+ R RGH+ A+DDFGTGYS L+YL LP D LK+D+SF+ Sbjct: 386 LEATERGFVDIEGARHTLAALRRRGHMTAIDDFGTGYSGLKYLQRLPVDALKIDKSFIDA 445 Query: 184 IGTDHEHP-VLACIIDLARKLKLKIVAEGVETPVQARYLEQACVDYAQGWHYARPMLAAE 242 +GT+ V II +AR+LKL+IVAEGVET QA YL Q V +AQGW ++R + E Sbjct: 446 VGTEAPTSHVTEHIIAMARELKLRIVAEGVETEAQAAYLRQRGVGFAQGWLFSRALPPEE 505 Query: 243 FARYCDRAASPAGSPLSPLSLHA 265 FA +C R G P + +L A Sbjct: 506 FAAFCTRNRKTFGVPANVETLAA 528 >ref|YP_003777118.1| signal transduction protein containing sensor and EAL domains protein [Herbaspirillum seropedicae SmR1] gb|ADJ65210.1| signal transduction protein containing sensor and EAL domains protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 128/255 (50%), Positives = 169/255 (66%), Gaps = 2/255 (0%) Query: 5 AQFKRAIEREEFRVVYQPIVVLADGRCAGAEVLVRWQREDGALLPPDRFLAAAQRHGYLN 64 A + A++++EF V YQPI+ +A GRC GAE L+RW+R DG+++ PD F+A A+ G + Sbjct: 271 ADLQLAVKKKEFIVHYQPIIEMASGRCIGAEALLRWRRPDGSIVRPDFFIALAEESGLIL 330 Query: 65 AITDRVLQQTVSDLAPTLRAHRCLHAAVNIPAQDVNSGRILEVLDAALDGTGIVPAQLWL 124 +TD V+ V ++ TLR R LH A+N+ AQD+ +GRILEV+ AL G+ I P QLW+ Sbjct: 331 PLTDLVVDTVVREMRDTLRQDRALHIAINVAAQDMKTGRILEVVSQALAGSDIRPEQLWM 390 Query: 125 EITESSSMETLPSRETLSRARERGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVIGI 184 E TE M+ + TL+RARE GH +ALDDFGTGYS L+YL LP D LK+D+SFV I Sbjct: 391 EATERGCMDIASASLTLARAREMGHSMALDDFGTGYSNLQYLQGLPMDALKIDKSFVSTI 450 Query: 185 GTD-HEHPVLACIIDLARKLKLKIVAEGVETPVQARYLEQACVDYAQGWHYARPMLAAEF 243 GT V+ II +A+ LKL IVAEGVET QA YL + VD+AQGW ++RP+ EF Sbjct: 451 GTGAATSAVIDHIIAMAKSLKLYIVAEGVETLEQAAYLAERGVDFAQGWLFSRPLPVEEF 510 Query: 244 -ARYCDRAASPAGSP 257 A YC A P Sbjct: 511 VAFYCATLADYGSGP 525 >gb|AAF83280.1|AE003897_5 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 530 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 119/248 (47%), Positives = 168/248 (67%), Gaps = 1/248 (0%) Query: 6 QFKRAIEREEFRVVYQPIVVLADGRCAGAEVLVRWQREDGALLPPDRFLAAAQRHGYLNA 65 + ++AI+R EF V YQPIV L+DGRC GAE LVRW+++DG L+ PD+F+ A+R G + Sbjct: 278 RLRQAIQRCEFFVCYQPIVSLSDGRCVGAEALVRWRQQDGTLILPDQFIPLAERSGLILP 337 Query: 66 ITDRVLQQTVSDLAPTLRAHRCLHAAVNIPAQDVNSGRILEVLDAALDGTGIVPAQLWLE 125 ITD+V+ ++ +L P L A R LH A+N+ +D+ SGR+L+VL AL TG+ QLW+E Sbjct: 338 ITDQVIAASMRELGPLLVADRSLHIAINVSVKDIESGRLLDVLALALQDTGLYRKQLWIE 397 Query: 126 ITESSSMETLPSRETLSRARERGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVIGIG 185 TE S M+ +RE + R RE G+ + +DDFGTGYS L+YL +LP D LK+D+SF+ +G Sbjct: 398 ATERSFMDARAAREHIVRLREAGYAVVIDDFGTGYSNLQYLQQLPLDALKIDKSFIDTVG 457 Query: 186 TDHEHPVLAC-IIDLARKLKLKIVAEGVETPVQARYLEQACVDYAQGWHYARPMLAAEFA 244 D + +A IID+A++L ++ +AEGVE Q YL VD AQGW ++ P+ AAEF Sbjct: 458 RDVTNTAVASHIIDIAKELGMRTIAEGVEREEQLTYLRARGVDMAQGWLFSSPLSAAEFV 517 Query: 245 RYCDRAAS 252 Y R S Sbjct: 518 DYLARNRS 525 >ref|NP_297760.2| hypothetical protein XF0470 [Xylella fastidiosa 9a5c] Length = 522 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 119/248 (47%), Positives = 168/248 (67%), Gaps = 1/248 (0%) Query: 6 QFKRAIEREEFRVVYQPIVVLADGRCAGAEVLVRWQREDGALLPPDRFLAAAQRHGYLNA 65 + ++AI+R EF V YQPIV L+DGRC GAE LVRW+++DG L+ PD+F+ A+R G + Sbjct: 270 RLRQAIQRCEFFVCYQPIVSLSDGRCVGAEALVRWRQQDGTLILPDQFIPLAERSGLILP 329 Query: 66 ITDRVLQQTVSDLAPTLRAHRCLHAAVNIPAQDVNSGRILEVLDAALDGTGIVPAQLWLE 125 ITD+V+ ++ +L P L A R LH A+N+ +D+ SGR+L+VL AL TG+ QLW+E Sbjct: 330 ITDQVIAASMRELGPLLVADRSLHIAINVSVKDIESGRLLDVLALALQDTGLYRKQLWIE 389 Query: 126 ITESSSMETLPSRETLSRARERGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVIGIG 185 TE S M+ +RE + R RE G+ + +DDFGTGYS L+YL +LP D LK+D+SF+ +G Sbjct: 390 ATERSFMDARAAREHIVRLREAGYAVVIDDFGTGYSNLQYLQQLPLDALKIDKSFIDTVG 449 Query: 186 TDHEHPVLAC-IIDLARKLKLKIVAEGVETPVQARYLEQACVDYAQGWHYARPMLAAEFA 244 D + +A IID+A++L ++ +AEGVE Q YL VD AQGW ++ P+ AAEF Sbjct: 450 RDVTNTAVASHIIDIAKELGMRTIAEGVEREEQLTYLRARGVDMAQGWLFSSPLSAAEFV 509 Query: 245 RYCDRAAS 252 Y R S Sbjct: 510 DYLARNRS 517 >gb|EGO81550.1| signal transduction protein [Xylella fastidiosa EB92.1] Length = 441 Score = 231 bits (590), Expect = 7e-59, Method: Composition-based stats. Identities = 116/239 (48%), Positives = 163/239 (68%), Gaps = 1/239 (0%) Query: 9 RAIEREEFRVVYQPIVVLADGRCAGAEVLVRWQREDGALLPPDRFLAAAQRHGYLNAITD 68 +AI+R EF V YQPIV L+DGRC GAE LVRW+++DG L+ PD+F+ A+R G + ITD Sbjct: 192 QAIQRCEFFVCYQPIVSLSDGRCVGAEALVRWRQQDGTLILPDQFIPLAERSGLILPITD 251 Query: 69 RVLQQTVSDLAPTLRAHRCLHAAVNIPAQDVNSGRILEVLDAALDGTGIVPAQLWLEITE 128 +V+ ++ +L P L A R LH A+N+ +D+ SGR+L+VL AL TG+ QLW+E TE Sbjct: 252 QVIAASMRELGPLLVADRSLHIAINVSVKDIESGRLLDVLALALQDTGLYRKQLWIEATE 311 Query: 129 SSSMETLPSRETLSRARERGHLIALDDFGTGYSCLRYLHELPCDVLKLDRSFVIGIGTDH 188 S M+ +RE + R RE G+ + +DDFGTGYS L+YL +LP D LK+D+SF+ +G D Sbjct: 312 RSFMDARAAREHIVRLREAGYAVVIDDFGTGYSNLQYLQQLPLDALKIDKSFIDTVGRDV 371 Query: 189 EHPVLAC-IIDLARKLKLKIVAEGVETPVQARYLEQACVDYAQGWHYARPMLAAEFARY 246 + +A IID+A++L ++ +AEGVE Q YL VD AQGW ++ P+ AEF Y Sbjct: 372 TNTAVASHIIDIAKELGMRTIAEGVEREEQLVYLRARGVDMAQGWLFSSPLSVAEFVDY 430