BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3663.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspiril...   113   7e-24
ref|YP_003776437.1| cell wall surface anchor protein [Herbaspiri...   110   8e-23
ref|YP_003777877.1| autotransporter adhesin protein [Herbaspiril...    64   1e-08

>ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62605.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1]
          Length = 8016

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 62/119 (52%), Positives = 80/119 (67%)

Query: 1   MDVGMLNPSEVPDLSAERIAAINNAVGGFFKVDAIGGEVVPTASQNVNGQVVVNPGFNPG 60
           +  G+   +  P+++ ERI + N AVG FFKVDAI GEVVPT   N  G  VVNP +N  
Sbjct: 328 LAAGVTTLAGAPEVTTERINSANAAVGAFFKVDAIAGEVVPTHIANSQGVGVVNPAYNAA 387

Query: 61  ISSEAYNYGVALKAISNLSALDPKVYPAQIDAIRKLANALQFVDDSNSALKWATNVRGQ 119
           IS+ A NYG ALKA++NL  LD + YP Q   ++KLA AL FVD++ SALKWAT  +G+
Sbjct: 388 ISAGAQNYGAALKALANLVLLDDRTYPNQAAVLQKLAEALVFVDEARSALKWATTAQGE 446


>ref|YP_003776437.1| cell wall surface anchor protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64529.1| cell wall surface anchor protein [Herbaspirillum seropedicae SmR1]
          Length = 7175

 Score =  110 bits (275), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 69/121 (57%), Positives = 85/121 (70%), Gaps = 1/121 (0%)

Query: 4   GMLNPSEVPDLSAERIAAINNAVGGFFKVDAIGGEVVPTASQNVNGQVVVNPGFNPGISS 63
           G +NP     L    +   NNAVGG FKVDAI GEVVPT++ NV GQV+ N  F   IS+
Sbjct: 277 GQVNPG-AASLDVNAVNNANNAVGGLFKVDAIAGEVVPTSTVNVQGQVISNAAFTNAISN 335

Query: 64  EAYNYGVALKAISNLSALDPKVYPAQIDAIRKLANALQFVDDSNSALKWATNVRGQSHGA 123
           +A+NYG ALKAI+NL  LD   YP Q DAI+KLA+ALQFVD + ++LKWATN +GQ+  A
Sbjct: 336 QAHNYGAALKAIANLVELDRNNYPTQADAIQKLADALQFVDGAGASLKWATNEKGQALPA 395

Query: 124 A 124
           A
Sbjct: 396 A 396


>ref|YP_003777877.1| autotransporter adhesin protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65969.1| autotransporter adhesin protein; hemagglutinin/hemolysin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 3631

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/88 (40%), Positives = 50/88 (56%)

Query: 29  FFKVDAIGGEVVPTASQNVNGQVVVNPGFNPGISSEAYNYGVALKAISNLSALDPKVYPA 88
            F V+   G+V+ T   + NG   +NP F    ++ A +YG+ALKAI+NL   D   YP 
Sbjct: 412 LFMVNISSGDVLTTTVTDANGAAAINPAFARSSNTSARHYGIALKAIANLQLTDATRYPD 471

Query: 89  QIDAIRKLANALQFVDDSNSALKWATNV 116
           Q  AI+KLA++L F D   + LKW   V
Sbjct: 472 QGVAIQKLADSLGFSDTQPNKLKWRDTV 499