BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3661.p (748 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776437.1| cell wall surface anchor protein [Herbaspiri... 635 e-180 ref|YP_003774512.1| inner membrane protein [Herbaspirillum serop... 458 e-126 ref|YP_003777877.1| autotransporter adhesin protein [Herbaspiril... 410 e-112 ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspiril... 375 e-101 >ref|YP_003776437.1| cell wall surface anchor protein [Herbaspirillum seropedicae SmR1] gb|ADJ64529.1| cell wall surface anchor protein [Herbaspirillum seropedicae SmR1] Length = 7175 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 372/742 (50%), Positives = 502/742 (67%), Gaps = 5/742 (0%) Query: 12 YDSTSRTLTLRKGDNGNWSGSELQSVVQAIKLAGSSTHDGLRTAQVSLVSASGETGNPST 71 YD+ SRTL + K D SGS++QS+VQ+IKL G++ DG+RTA +LVS +GETG ST Sbjct: 6434 YDAASRTLDIAKTDGSTLSGSQVQSLVQSIKLGGAALGDGVRTASFALVSTTGETGGAST 6493 Query: 72 ASIRFDTHAPVLDADTSRVDVQTSSFKTLNGAKAVAGEGLFAHDIVVWPTSDISSIVIRM 131 A++ DT AP++D D + VQ S+ K+++ A+A AGE LF + VV +DI SI + M Sbjct: 6494 AALMVDTRAPLVDLDGALPGVQNSASKSISAARATAGESLFPQETVVQQANDIVSIKLAM 6553 Query: 132 DGPQLNLQHDKLLLDVPLALDASLPSVTGKTVGGVAGLTYGYEGSGHRLSISKSSGAALS 191 G L+L DKL+LD PL L+ S ++ + VGGVAGL+YGY+ + LSISK++G A++ Sbjct: 6554 SGAALDLARDKLVLDQPLDLNTSATTIGNRVVGGVAGLSYGYDDASRTLSISKTAGTAMT 6613 Query: 192 GLEARAILKAIQFQNATPSAGDRSASITLTDQAGNSNTVVANLSVDLTLPASISAALVSG 251 E +I+KAIQF+NA P AGDR AS+TLTD AGN +T LSVD T+PAS+ A L +G Sbjct: 6614 SDEVSSIVKAIQFKNAAPQAGDRLASLTLTDLAGNRSTASVKLSVDTTVPASLKATLAAG 6673 Query: 252 KQVSYKTLTVPDIMGSTNPHNLHSGESADLTSLLPADMTAASFISSLKGMYAEWGGMAIT 311 Q+SYK L+VPD++G N H L +GES DL+SL+P A S +SSLKG+Y EWGG+A + Sbjct: 6674 NQLSYKMLSVPDVLGPINKHTLSNGESVDLSSLMPGSGDAVSLLSSLKGIYGEWGGLAFS 6733 Query: 312 TNDNTTEKHFNSVYSFPNGFGLGTTFAVVHQGGPYAKGENFKFVSPDGHQLLLSALDGFY 371 N NTT + SV F + G +F ++HQ GE++ F +PD L+L+A GF Sbjct: 6734 GNGNTTNPNDRSVIGFSSSPGFDHSFRLIHQNNRLVMGESYFFTAPDAKTLVLNAQAGFD 6793 Query: 372 AANTDVFSYKSPTA--TQNYDIGNVRLLYQVTTDNPSSQPTIKVSYDGTKASAGDVIGLY 429 NTDVF++ + YDIGN+RLL+Q T N ++QPTI+VS+DGT+A+AGDVI L Sbjct: 6794 DVNTDVFAFNPDGVPMDKGYDIGNLRLLFQAPTANVNTQPTIQVSFDGTRAAAGDVIRLM 6853 Query: 430 EGDKLLGSRTLTAADVGTAGMTLDVTTTGSLSAGEHVIQTRFSDTAGNLVVGNDVHVTLA 489 EG ++L SRTL+ AD+G++ +TL +T SL AG+H + +++ D AGN V GND+ + Sbjct: 6854 EGGQVLASRTLSDADLGSSNVTLSLTPASSLGAGQHTLSSKYIDVAGNTVTGNDIVFNVQ 6913 Query: 490 AGAVAPMLGNLRVNGETPDIQPINASSTKYAMIAETPTSAATLTGLDQNLTFSGTVGGAG 549 GA AP+L NL+V+G+ Q IN S+T+YAM++ + +GL L+F+GTVG AG Sbjct: 6914 GGATAPVLSNLKVSGDGQAAQAINDSTTRYAMVSAAAGDSTGSSGLQHQLSFTGTVGTAG 6973 Query: 550 TNDTYLISVSMGGKVIVFGEVKAGDFSLTTPANVLAPGMYHDLTITATNTSAGVNNGQTT 609 + +YL++VSMGGK++ F + AGDF L PANVLAPG Y DL+I AT+ + G +NGQ+T Sbjct: 6974 SGHSYLVTVSMGGKLLAFNQFAAGDFKLEAPANVLAPGFYKDLSIVATDVTDGPSNGQST 7033 Query: 610 VVQNQTLGWYWVPQKLESLKGGAGDDQIQLSVTA---GGANTVVQTGIGKDTLVLGGFGT 666 + QTLGWYW PQ L +L GAGDD I L A G NT VQTG GKDTLV+G G Sbjct: 7034 AIGGQTLGWYWAPQSLTNLTAGAGDDMIPLGAAATANGIYNTEVQTGAGKDTLVVGASGA 7093 Query: 667 SDSSRLVATVSDFTLGQDKVAVFAQNVTKDNLGTYVQASSYNTSSTKLMVDLDGAGAGNT 726 +DS+RL+A VSDF +G DKV+V Q VT NL +V AS+ + T L +DLDG G G+ Sbjct: 7094 TDSARLMARVSDFMVGMDKVSVAGQTVTAANLDRFVTASAAPANGTILSIDLDGPGPGSL 7153 Query: 727 VYTLYLQNLAYNPGNTHTIFGV 748 YTL L N+ Y NTHTIFGV Sbjct: 7154 TYTLLLVNVQYAQSNTHTIFGV 7175 Score = 102 bits (254), Expect = 3e-19, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 1/231 (0%) Query: 12 YDSTSRTLTLRKGDNGNWSGSELQSVVQAIKLAGSSTHDGLRTAQVSLVSASGETGNPST 71 Y + +RTL+L K G ++G E++++V+ IKL + G RT +SLV A Sbjct: 6273 YTAATRTLSLTKTLGGTFTGQEVEAIVENIKLQNVAPTPGRRTIDISLVDAGKLASPVVQ 6332 Query: 72 ASIRFDTHAPVLDADTSRVDVQTSSFKTLNGAKAVAGEGLFAHDIVVWPTSDISSIVIRM 131 A++ + ++D D Q ++ + + A +A F ++ + + + + Sbjct: 6333 ATLAISSDNLLIDLDPKTTGAQLAATQIVTDAAVLAAGVAFDANVGAPSATTARLLRVSL 6392 Query: 132 DGPQLNLQHDKLLLDVPLALDASLPSVTGKTVGGVAGLTYGYEGSGHRLSISKSSGAALS 191 G LN + DKL+LD PL L ASL +V+G+TV G+ GL+Y Y+ + L I+K+ G+ LS Sbjct: 6393 GGAGLNPKSDKLMLDTPLDLSASLATVSGRTVAGITGLSYTYDAASRTLDIAKTDGSTLS 6452 Query: 192 GLEARAILKAIQFQNATPSAGDRSASITLTDQAGNS-NTVVANLSVDLTLP 241 G + ++++++I+ A G R+AS L G + A L VD P Sbjct: 6453 GSQVQSLVQSIKLGGAALGDGVRTASFALVSTTGETGGASTAALMVDTRAP 6503 Score = 73.9 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 13/263 (4%) Query: 2 PARRSPWRKPYDSTSRTLTLRKGDNGNWSGSELQSVVQAIKLAGSSTHDGLRTAQVSLVS 61 P S W S S+ + + G SG LQ I G+ T T V Sbjct: 6104 PEDVSSWGLATMSFSQIQIEAQQNGGQSSGQTLQPGATVINSNGTRTRTW--TYWVEQTD 6161 Query: 62 ASGETGNPSTASIRFDTHAP-VLDADTSRVDVQTSSFKTLNGAKAVAGEGLFAHDIVVWP 120 +G +T ++ +T AP LD D + QT++ + + ++ AG A D+ Sbjct: 6162 LAGNLSPRATFNVLVETAAPPTLDLDAAVARTQTTALRQSSNSELRAGTAFLA-DVAAPL 6220 Query: 121 TSDISSIVIRMDGPQLNLQHDKLLLDVPLALDASLPSVTGKTVGGVAGLTYGYEGSGHRL 180 + ++I + GP+L + D+LLLD +ALD +L V GKTVGGV ++Y Y + L Sbjct: 6221 KNSTTTIKVVFGGPELRVADDRLLLDALVALDQNLAPVKGKTVGGVNDVSYVYTAATRTL 6280 Query: 181 SISKSSGAALSGLEARAILKAIQFQNATPSAGDRSASITLTDQAGNSNTVVA-------- 232 S++K+ G +G E AI++ I+ QN P+ G R+ I+L D ++ VV Sbjct: 6281 SLTKTLGGTFTGQEVEAIVENIKLQNVAPTPGRRTIDISLVDAGKLASPVVQATLAISSD 6340 Query: 233 NLSVDLTLPASISAALVSGKQVS 255 NL +DL P + A L + + V+ Sbjct: 6341 NLLIDLD-PKTTGAQLAATQIVT 6362 >ref|YP_003774512.1| inner membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62604.1| inner membrane protein (Large repetitive protein) [Herbaspirillum seropedicae SmR1] Length = 1882 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 290/766 (37%), Positives = 436/766 (56%), Gaps = 26/766 (3%) Query: 3 ARRSPWRKPYDSTSRTLTLRKGDNGNWSGSELQSVVQAIKLAGSSTHDGLRTAQVSLVSA 62 A P R Y + +TL++ +G+++Q++V+ +KL DG R AQ L+ Sbjct: 1123 ADHGPLRYTYAAKEQTLSIDSASGKALTGAQVQAIVRLVKLVNPLGLDGERQAQFRLIDM 1182 Query: 63 SGETGNPSTASIRFDTHAPVLDADTSRVDVQTSSFKTLNGAKAVAG---EGLFAHDIVVW 119 GE G PST + DT APVLD D Q+ S KT+ +A + EGLF+H I Sbjct: 1183 DGEMGTPSTTRLLVDTQAPVLDLDFFTPGTQSLSEKTIGLGRANSDGYPEGLFSHRITAP 1242 Query: 120 PTSDISSIVIRMDGPQ--LNLQHDKLLLD-----VPLA-LD-ASLPSVTGKTVGGVAGLT 170 +D++ I ++ G L+ D L L P+A +D +V GK +G + Sbjct: 1243 MANDVARIKLQFSGKDAPLSFSEDVLALKNEDYWQPVAEIDLGKSNTVHGKYIGKLYDFN 1302 Query: 171 YGYEGSGHRLSISKSSGAALSGLEARAILKAIQFQNATPSAGDRSASITLTDQAGNSNTV 230 Y Y+ + L K G + G E +A+L+++ ++ + G RS ITLTDQAGNS++ Sbjct: 1303 YTYDAATKELVFQKWLGESFLGTEVKALLESLHYKIGSKEPGTRSIDITLTDQAGNSSSA 1362 Query: 231 VANLSVDLTLPASISAALVSGKQVSYKTLTVPDIMGSTNPHNLHSGESADLTSLLPADMT 290 + VD T ++ A LV+ Q+SY+ L + DI+G +PHNL GES +L LP M Sbjct: 1363 TTRIKVDTTPAPAVKAELVAQNQMSYQVLNLGDILGQVHPHNLSKGESVNLP--LPVGMD 1420 Query: 291 AASFISSLKGMYAEWGGMAITTNDNTTEKHFNSVYSFPNGFGLGTTFAVVHQGGPYAKGE 350 A +F++++KG+ AEWGG IT N NTT + S F G +F + HQ G Y KG Sbjct: 1421 AQTFLAAVKGISAEWGGRGITGNPNTTFAEYKSYLVFDKPLTSGQSFGMAHQSGAYVKGN 1480 Query: 351 NFKFV-SPDGHQLLLSALDGFYAANTDVFSY--KSPTATQNYDIGNVRLLYQVTTDNPSS 407 F F + DG L+L+ G YA+N D++ + + NYDIGN+R+LYQV T + Sbjct: 1481 MFSFTATADGKGLVLTNKGGSYASNLDMYQFGGSEQSTNGNYDIGNIRILYQVDTGMSNL 1540 Query: 408 QPTIKVSYDGTKASAGDVIGLYEGDKLLGSRTLTAADVGTAGMTLDVTTTGSLSAGEHVI 467 PT+KV ++ ++AS GD++ + G+ + S+TLTA D+ + ++ +T S+ ++ + Sbjct: 1541 NPTVKVKFNASEASVGDIVSVRSGNSV-ASKTLTANDLASPEASVSLTLAESILGSDNYL 1599 Query: 468 QTRFSDTAGNLVVGNDV--HVTLAAGAVAPMLGNLRVNGETPD-IQPINASSTKYAMIAE 524 T + + +GN+ N++ + VAP+L +L V +Q +N S+T+YA I++ Sbjct: 1600 YTEYKEASGNIASANEITAYADRPQSVVAPVLSDLNVASPNKGGVQALNDSTTQYASISD 1659 Query: 525 TPTSAATLTGLDQNLTFSGTVGGAGTNDTYLISVSMGGKVIVFGEVKAGDFSLTTPANVL 584 P + ++ L F G VG G++D YLI+V MG KV+ F V AGDF+L++ AN++ Sbjct: 1660 -PGAPWAPGNYERGLLFGGKVGAEGSSDKYLITVKMGSKVLAFDTVNAGDFTLSSAANLI 1718 Query: 585 APGMYHDLTITATNTSAGVNNGQTTVVQNQTLGWYWVPQKLESLKGGAGDDQIQLSVTAG 644 APG++ DL+ TATN ++G NNG T+ V LG YW Q L +GG G+D L T Sbjct: 1719 APGLHEDLSFTATNITSGNNNGMTSTVTGLKLGHYWATQFLGDTRGGHGNDNFLLGATKN 1778 Query: 645 GANTVVQTGIGKDTLVLGGFGTSDSSRLVATVSDFTLGQDKVAVFAQNVTKDNLGTYVQ- 703 G NT++QT G DTL LG FG + AT++DFT G DK+AVF +++ NL +V+ Sbjct: 1779 GLNTLIQTNGGDDTLTLGAFGKQGN--FAATITDFTAGADKIAVFGKSIDLGNLQQFVKE 1836 Query: 704 -ASSYNTSSTKLMVDLDGAGAGNTVYTLYLQNLAYNPGNTHTIFGV 748 A + TK++VDLDGA AGN YTL+LQN+AY P NTHT+FG+ Sbjct: 1837 VAPIQGGNGTKVVVDLDGAAAGNQTYTLHLQNVAYQPANTHTLFGI 1882 >ref|YP_003777877.1| autotransporter adhesin protein [Herbaspirillum seropedicae SmR1] gb|ADJ65969.1| autotransporter adhesin protein; hemagglutinin/hemolysin protein [Herbaspirillum seropedicae SmR1] Length = 3631 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 286/759 (37%), Positives = 440/759 (57%), Gaps = 28/759 (3%) Query: 8 WRKPYDSTSRTLTLRKGDNGNWSGSELQSVVQAIKLAGSSTHDGL-RTAQVSLVSASGET 66 W P D T+ ++ D + +E++++++ I + + L R+ ++LV+A+G + Sbjct: 2883 WFLPADKPGLTVIRKQQDGALLTPAEVKAILEGIAIRCGTPPGSLERSMDITLVTATG-S 2941 Query: 67 GNPSTASIRFDTHAPVLDADTSRVDVQTSSFKTLNGAKAVAGEGLFAHDIVVWPTSDISS 126 G S A++ DT APVLD D + +Q S K++ +A+ G LF ++ DI S Sbjct: 2942 GTTSRATLVLDTRAPVLDLDANTPGIQIQSSKSVRLDEAITGVKLFNGEMSAPIAQDIGS 3001 Query: 127 IVIRMDGPQL-NLQHDKLLLDVPLALDASLPSVTGKTVGGVAGLTYGYEGSGHRLSISKS 185 + R+ P+ + +D L+L S +G ++GGV+GL Y S + +IS++ Sbjct: 3002 L--RLTLPRSGDASNDDLILGNERFATRSNIDFSG-SLGGVSGLELHYAASTGQAAISRT 3058 Query: 186 SGAALSGLEARAILKAIQFQNATPSAGDRSASITLTDQAGNSNTVVANLSVDLTLPASIS 245 GA + GL+ +AIL++++++ A SAG R+ ++ + DQAGN L++D T+PA ++ Sbjct: 3059 GGAPMDGLQVKAILESLKYRFA--SAGARNIAVEVADQAGNVARGDVTLTLDTTVPAQLT 3116 Query: 246 AALVSGKQVSYKTLTVPDIMGS-----TNPHNLHSGESADLTSLLPADMTAASFISSLKG 300 +++ Q ++ + +I GS T+PHNL+ GE LT+L AASF+ +++G Sbjct: 3117 TTMLAETQKAFGVAKMENIFGSPFFPITSPHNLNKGEGVALTNLPSGFANAASFLGAIRG 3176 Query: 301 MYAEWGGMAITTNDNTTEKHFNSVYSFPNGFGLGTTFAVVHQGGPYAKGE--NFKFVSPD 358 + AEWGG+A+T N N++ + S F G AV+ Q G A G +F V Sbjct: 3177 VSAEWGGVALTGNPNSSNPNLKSYTLFNQPLNPGQEVAVMQQAGSDALGSWLSFTLVRQA 3236 Query: 359 GHQ---LLLSALDGFYAANTDVFSYKSP--TATQNYDIGNVRLLYQVTTDNPSSQPTIKV 413 G Q + L+ L F + D++ ++ + YD+ NV LLYQ+ T P+ PT++V Sbjct: 3237 GRQADDVYLNHLGSFVLNHLDLYRSETSRDKSQSGYDLANVGLLYQIDTHRPNKTPTLQV 3296 Query: 414 SYDGTKASAGDVIGLYEGDKLLGSRTLTAADVGTAGMTLDVTTTGSLSAGEHVIQTRFSD 473 YD ++A+ GDV+ L+EG +L + LTAAD+G+ T+++T SL+ GEH I R++D Sbjct: 3297 GYDASRAAVGDVVALFEGGTMLARKVLTAADLGSGTKTVNLTVAQSLAPGEHDIVARYTD 3356 Query: 474 TAGNLVVGNDVHVTLAAGAVAPMLGNL--RVNGETP-DIQPINASSTKYAMIAETPTSAA 530 AGN V G HV++A G L +L R + + P +Q +NAS +YA+I + TS Sbjct: 3357 LAGNTVNGTAQHVSVAGGGDPVTLTDLAVRSSKQAPAAVQALNASENRYAVINDLDTSDI 3416 Query: 531 TLTGLDQNLTFSGTVGGAGTNDTYLISVSMGGKVIVFGEVKAGDFSLTTPANVLAPGMYH 590 + + SG VGG +D Y+++V MGGKV+ F EV AGDFS++ A LAPG+Y Sbjct: 3417 SGHSASGPV-ISGKVGGGRDSDRYVVTVEMGGKVLAFDEVGAGDFSISLSAGSLAPGLYR 3475 Query: 591 DLTITATNTSAGVNNGQTTVVQNQTLGWYWVPQKLESLKGGAGDDQIQLSVTAGGANTVV 650 DLT+TA+ S G GQ+T VQ LGWYW Q + + GG G+D I + T A + V Sbjct: 3476 DLTVTASRAS-GNEPGQSTAVQGLKLGWYWAAQSVSDIFGGNGNDDIVIGTTHYSAASFV 3534 Query: 651 QTGIGKDTLVLGGFGTSDSSRLVATVSDFTLGQDKVAVFAQNVTKDNLGTYVQASS-YNT 709 QTG G+D +++G FG SD+ L ATV DF LG DKV VF Q++T+ NL +V AS+ N Sbjct: 3535 QTGAGQDKVIVGAFGRSDN--LAATVGDFVLGVDKVEVFNQSLTQANLSRFVTASAGVNP 3592 Query: 710 SSTKLMVDLDGAGAGNTVYTLYLQNLAYNPGNTHTIFGV 748 + T+L +DLDGAG G YTL LQN+AYN NT TIFG+ Sbjct: 3593 NDTRLSIDLDGAGPGTLTYTLMLQNVAYNSANTATIFGL 3631 Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 11/246 (4%) Query: 18 TLTLRKGDNGNWSGSELQSVVQAIKLA--GSSTHDGLRTAQVSLVSASG-ETGNPSTASI 74 T+TL K D ++G E ++V+Q+++L G T R+ +SL SG + + + ++ Sbjct: 2726 TVTLTKTDGSAFTGDEARNVLQSLRLQNLGFDTGKKSRSVDISLGDGSGHRSADLNRVTV 2785 Query: 75 RFDTHAPVLDADTSRVDVQTSSFKTLNGAKAVAGEGLFAH---DIVVWPTSDISSIVIRM 131 D ++D D + VQTS + +N +A + D V P S + I +R Sbjct: 2786 LTDGSGLLVDLDARQAGVQTSHTRYINSPTKLAFDAAGGERFLDNVAAPASATAEIQLRF 2845 Query: 132 DGPQLNLQHDKLLLDVPLALDASLPSVTGKTVGGVAGLTYGYEGSGHRLSI--SKSSGAA 189 +G L+ D +LL + P+V +GGV G+ + L++ + GA Sbjct: 2846 NG--LDGNKDAVLLSDNYRYSPARPNVFYGDIGGVTGVFWFLPADKPGLTVIRKQQDGAL 2903 Query: 190 LSGLEARAILKAIQFQNATPSAG-DRSASITLTDQAGNSNTVVANLSVDLTLPASISAAL 248 L+ E +AIL+ I + TP +RS ITL G+ T A L +D P A Sbjct: 2904 LTPAEVKAILEGIAIRCGTPPGSLERSMDITLVTATGSGTTSRATLVLDTRAPVLDLDAN 2963 Query: 249 VSGKQV 254 G Q+ Sbjct: 2964 TPGIQI 2969 Score = 57.8 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 7/200 (3%) Query: 43 LAGSSTHDGLRTAQVSLVSASGETGNPSTASIRFDTHAP-VLDADTSRVDVQTSSFKTLN 101 L + D Q+ V A G + +R T AP +LD D VQ S ++ Sbjct: 2587 LNANGARDAAWRYQLKQVDAQGRISEAADLKLRMVTTAPSLLDLDAFTDGVQASRSIVVS 2646 Query: 102 GAKAVAGEGLFAHDIVVWP-TSDISSIVIRMDGPQLNLQHDKLLLDVPLALDASLPSVTG 160 A + G+ V P SDI I + D + D LLLD + ++ +L V Sbjct: 2647 NADVSSASGVALMPQVATPKASDIRFIELVSDNAGAS-PVDSLLLDRAVGINNNLAQVDN 2705 Query: 161 KTVGGVAGLTYGYEGSGHR--LSISKSSGAALSGLEARAILKAIQFQNATPSAG--DRSA 216 +++GGV GL+Y + ++++K+ G+A +G EAR +L++++ QN G RS Sbjct: 2706 RSIGGVTGLSYKVSTVAKKSTVTLTKTDGSAFTGDEARNVLQSLRLQNLGFDTGKKSRSV 2765 Query: 217 SITLTDQAGNSNTVVANLSV 236 I+L D +G+ + + ++V Sbjct: 2766 DISLGDGSGHRSADLNRVTV 2785 >ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1] gb|ADJ62605.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1] Length = 8016 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 290/769 (37%), Positives = 416/769 (54%), Gaps = 39/769 (5%) Query: 12 YDSTSRTLTLRKGDNGNW--SGSELQSVVQAIKLAGSSTHDGLRTAQVSLVSASGETGNP 69 Y+ T+ T TLR D + +++Q++V+++ L+ + DG R A++ + G G Sbjct: 7255 YEYTADTRTLRIVDTTGLGLNDTKIQAIVESLALSNPAAKDGERVAELLVFRTDGSKGPV 7314 Query: 70 STASIRFDTHAPVLDADTSRVDVQTSSFKTLNGAKAVAGEGLFAHDIVVWPTSDISSIVI 129 STA I DT APVLD D VQTSS K+ A AG GLF I V +DI I + Sbjct: 7315 STARIILDTVAPVLDLDAGVAGVQTSSAKSAVLASVAAGTGLFGKPIAVAAATDIDLIRL 7374 Query: 130 RMDGPQLNLQHDKLLLDVPLALDASLPSVTGK---TVGGVAGLTYGYEGSG---HRLSIS 183 G L D L L A TG+ + GV+ L Y G R+ S Sbjct: 7375 DYTGRTSELLKDFLSTASLLPAVALPLGATGRGNIDISGVSRLKYALSSPGSVSKRIEFS 7434 Query: 184 KSSGAALSGLEARAILKAIQFQNATPSAGDRSASITLTDQAGNSNTVV-ANLSVDLTLPA 242 K SG A++ +EA+ IL+A++F+ + R + L D+AGN++ +V + LS+D P Sbjct: 7435 KESGEAITSIEAKTILEALRFKTTSTDTTSRRFDVVLVDKAGNASALVQSTLSIDTRTPP 7494 Query: 243 SIS-AALVSGKQVSYKTLTV-PDIMGSTNPHNLHSGESADLTSLLPADMTAASFISSLKG 300 ++S L G Q+S+ LT+ D+ N NL GES LT LPA+ T SF+S+LK Sbjct: 7495 TLSMTKLEEGNQISFGMLTLNTDLGNDVNTGNLKKGESVALT--LPAEFTPTSFLSALKA 7552 Query: 301 MYAEWGGMAITTNDNTTEKHFNSVYSFPNGFGLGTTFAVVHQGGPYAKGENFKFVSPDGH 360 + ++WGG I+ + + E + S S L ++F++ HQ KG +F S G+ Sbjct: 7553 ISSDWGGPGISGSSSVIEDRYRSYTSVAAPSTLTSSFSMAHQSHSSVKGNQVQF-SIAGN 7611 Query: 361 QLLLSALDGFYAANTDVFSY-----KSPTATQNYDIGNVRLLYQVTTDNPSSQPTIKVSY 415 L GF ++D++ + +S T YD+GN+RLLYQ TT N +S PT VSY Sbjct: 7612 TLSFINNGGFAVLDSDIYRFTRFNGESKDLTGGYDMGNLRLLYQTTTANVNSTPTFAVSY 7671 Query: 416 DGTKASAGDVIGLYEGDKLLGSRTLTAADVGTAGM-TLDVTTTGSLSAGEHVIQTRFSDT 474 D + + GDVIGLYEG+KLL S+TL +ADVG G TL++ + SL+ G H I ++++ Sbjct: 7672 DRARVAVGDVIGLYEGNKLLASKTLESADVGGTGTATLNLKISDSLAPGNHAIVSKYTSA 7731 Query: 475 AGNLVVGNDVHVTLAAGAVAPMLGNLRVN---GETPDIQPINASSTKYAMIAETPTSAAT 531 G V + A P+L +L+V GE + I Y I + P T Sbjct: 7732 TGLTSQSTATTVNITGDAKTPLLTDLKVKAGYGEESTAKAILLGGDAYTSITD-PGRVGT 7790 Query: 532 LTGLDQNLTFSGTVGGAGTN--DTYLISVSMGGKVIVF--------GEVKAGDFSLTTPA 581 D+ L FSG+V G YL++VS+GGK++ + + F+L + Sbjct: 7791 EGTYDKGLIFSGSVNTPGLTGPQKYLVTVSLGGKLLGYDTFTLSTTDDPATSKFTLQAAS 7850 Query: 582 NVLAPGMYHDLTITATNTSAG-VNNGQTTVVQNQTLGWYWVPQKLESLKGGAGDDQIQLS 640 N+LAPG+Y DLT T TN + G ++NGQT+V+++ +LGWYWV Q + +L GG G+D + L Sbjct: 7851 NLLAPGLYRDLTATVTNVTEGSIHNGQTSVIKDASLGWYWVGQGMGNLIGGQGNDGMLLG 7910 Query: 641 VTAGGANTVVQTGIGKDTLVLGGFGTSDSSRLVATVSDFTLGQDKVAVFAQNVTKDNLGT 700 + + V TG G TL LG FG SS L ATV+DF LG DKV V+ Q++T NL + Sbjct: 7911 ASQTTSPFTVTTGAGAGTLTLGAFGK--SSNLTATVTDFQLGLDKVQVWGQSITSANLSS 7968 Query: 701 YVQAS-SYNTSSTKLMVDLDGAGAGNTVYTLYLQNLAYNPGNTHTIFGV 748 + A+ S N ST L VDLDG G + YTL LQN+A+N NT TIFGV Sbjct: 7969 FASATASDNGRSTTLTVDLDGVRGGLS-YTLQLQNVAFNAANTQTIFGV 8016 Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 2/223 (0%) Query: 34 LQSVVQAIKLAGSSTHDGLRTAQVSLVSASGETGNPSTASIRFDTHAPVLDADTSRVDVQ 93 + +++++I+L +G RT ++LV +G PSTA+I + LD D + + Q Sbjct: 7119 IDAIIRSIRLHNPGFTEGERTMTITLVDGAGRESLPSTATISVTSPFMWLDLDPNTAETQ 7178 Query: 94 TSSFKTLNGAKAVAGEGLFAHDIVVWPTSDISSIVIRMDGPQLNLQHDKLLLDVPLALDA 153 +S L A ++ F I P + + + +++ G L++ +DKL LDV L L+A Sbjct: 7179 FNSTNYLRSAASLVNGVAFDSQIAA-PYNTVRGLEVKLSGAGLDVVNDKLKLDVSLNLNA 7237 Query: 154 SLPSVTGKTVGGVAGLTYGYEGSGHRLSISKSSGAALSGLEARAILKAIQFQNATPSAGD 213 GK +G + GL Y Y L I ++G L+ + +AI++++ N G+ Sbjct: 7238 DSRYQIGKVLGNITGLGYEYTADTRTLRIVDTTGLGLNDTKIQAIVESLALSNPAAKDGE 7297 Query: 214 RSASITLTDQAGNSNTV-VANLSVDLTLPASISAALVSGKQVS 255 R A + + G+ V A + +D P A V+G Q S Sbjct: 7298 RVAELLVFRTDGSKGPVSTARIILDTVAPVLDLDAGVAGVQTS 7340