BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3660.p         (283 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776436.1| hypothetical protein Hsero_3040 [Herbaspiril...   392   e-107

>ref|YP_003776436.1| hypothetical protein Hsero_3040 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64528.1| hypothetical protein Hsero_3040 [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  392 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 220/279 (78%), Positives = 248/279 (88%)

Query: 5   SADSDEQNFWPGYVDSMVNMVMYLLLLIAILAMAVMYFSMRARDEAKDSKATELEMPGKP 64
           + DSDEQNFWPGYVDSMVNMVMYLLLLIAILAMAVMYFSMRARDEA D+KATE    GKP
Sbjct: 3   AVDSDEQNFWPGYVDSMVNMVMYLLLLIAILAMAVMYFSMRARDEAVDAKATEKLALGKP 62

Query: 65  FPKALPGPNAVTPVSPSAEELHAQIEQMRQTLNNNEVRYKADVAELKEKLRESDQRYKAS 124
            PKA PGPN   P   + +ELHAQ+E++RQ+++ +E+RYKADVAELKEKLRES+ R+KAS
Sbjct: 63  HPKAYPGPNEAKPEIAAEDELHAQLERLRQSMHESEIRYKADVAELKEKLRESELRFKAS 122

Query: 125 GLAKVEKPNQKESGNNMKSTPDANLAKDGASDRVVDASGTAGSLPKGVEQFALRPSVLIV 184
           GL+K EKPNQKE GNN+KSTPDA+LAK+GA++RVVDASGTAGSLP+G+E  ALRPSVLIV
Sbjct: 123 GLSKTEKPNQKERGNNLKSTPDADLAKEGAAERVVDASGTAGSLPQGLEALALRPSVLIV 182

Query: 185 RFRPGTVDLSPDEAKRMNETFIKHFEWNASLEQSFTISSAAVEGLSESNRMAFYRVVAVR 244
           RFRPGTVDLS  EAKRM ETF+ HF WNA+ EQ+FTISS AVEGLSESNRMAFYRVVAVR
Sbjct: 183 RFRPGTVDLSGIEAKRMTETFVSHFNWNANREQTFTISSTAVEGLSESNRMAFYRVVAVR 242

Query: 245 NHLLSIGVPAARIRQRIEPVPAARQSGTEGLEIRIQKTE 283
           NHLLS+GVPA+RIRQRIEPV AA QSG EGLEIRIQK+E
Sbjct: 243 NHLLSLGVPASRIRQRIEPVQAASQSGVEGLEIRIQKSE 281