BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3659.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776435.1| hypothetical protein Hsero_3039 [Herbaspiril...   146   9e-34
ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspiril...    54   7e-06

>ref|YP_003776435.1| hypothetical protein Hsero_3039 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64527.1| hypothetical protein Hsero_3039 [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score =  146 bits (369), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 86/131 (65%), Positives = 97/131 (74%)

Query: 1   MSDAASSIEDALMGKTTYTLDVMQAGTALRKIPIETIQDVRSLGIDLLLVLRSGGQILLR 60
           MS  A + E+AL GKTTYTLD+ QAGTALRKIPIE+I+DVRSLGIDLLLV  SGGQILLR
Sbjct: 1   MSQEAQTAEEALAGKTTYTLDIAQAGTALRKIPIESIKDVRSLGIDLLLVFSSGGQILLR 60

Query: 61  EGALDALVNPDRRLQFSDGVLTLQQIFMQSEQFDFLHQSGSATGAEVPAADVHVPLPPQP 120
           EGAL+ALV+P RRLQFSDGVLTLQQIF QSE+FDF +   SA      AA     L   P
Sbjct: 61  EGALEALVHPQRRLQFSDGVLTLQQIFTQSERFDFFNNDSSAPDGPGAAAQHLAALAASP 120

Query: 121 IVVPGPAFPFG 131
                 ++PFG
Sbjct: 121 EASVMASYPFG 131


>ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62605.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1]
          Length = 8016

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/79 (46%), Positives = 55/79 (69%)

Query: 16 TTYTLDVMQAGTALRKIPIETIQDVRSLGIDLLLVLRSGGQILLREGALDALVNPDRRLQ 75
          TT  L + ++   L+ I +++I+DVR+L +DLLLVL +G QIL+  GA+ AL +PD  LQ
Sbjct: 2  TTTVLKLSESSAFLKTISLKSIKDVRALDVDLLLVLTNGDQILISGGAMHALNSPDMALQ 61

Query: 76 FSDGVLTLQQIFMQSEQFD 94
          FSDG L L ++F Q E+ +
Sbjct: 62 FSDGQLPLARVFEQIERIN 80