BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3654.p (455 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776431.1| branched-chain amino acid ABC transporter pe... 754 0.0 ref|YP_585659.1| ABC transporter periplasmic protein [Cupriavidu... 597 e-168 ref|ZP_07675151.1| amino acid uptake ABC transporter [Ralstonia ... 592 e-167 ref|YP_002983150.1| extracellular ligand-binding receptor [Ralst... 592 e-167 ref|YP_297571.1| extracellular ligand-binding receptor [Ralstoni... 591 e-167 >ref|YP_003776431.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64523.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 387/404 (95%), Positives = 397/404 (98%) Query: 52 MIPSTTLRRLAAACAIAGIFAGPALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMA 111 M ST LRRLAAACAIAGIF+G ALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMA Sbjct: 1 MSTSTPLRRLAAACAIAGIFSGAALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMA 60 Query: 112 VADYGGKVLGKPVEILSADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMA 171 VAD+GG VLGKP+E++SADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMA Sbjct: 61 VADFGGTVLGKPIEVISADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMA 120 Query: 172 EKKRVYINIGAGTARLTNEECTPYTVHYEYDTVALAKGTASAVIKQGGKSWFFLVADYAF 231 EKKRVYINIGAGTARLTNEECTPYTVHYEYDTVALAKGTASAVIKQGGKSWFFLVADYAF Sbjct: 121 EKKRVYINIGAGTARLTNEECTPYTVHYEYDTVALAKGTASAVIKQGGKSWFFLVADYAF 180 Query: 232 GHSLANDTSAVVKANGGTVIGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSI 291 GHSLANDTSAVVKA+GGTV+GSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSI Sbjct: 181 GHSLANDTSAVVKASGGTVVGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSI 240 Query: 292 KAAKEFGVTKTMKLVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKM 351 KAAKEFGVTKTMKLVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKM Sbjct: 241 KAAKEFGVTKTMKLVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKM 300 Query: 352 KKMPSTHQAAAYSATMTYLKAVEAIGTDDATKVMAQLKKTRIDDFYNKGYIRADGRNIHD 411 KKMPSTHQAAAYSAT TYLKAV+AIGTDD+TKVMAQLKKTRIDDFYNKG IRADGRNIHD Sbjct: 301 KKMPSTHQAAAYSATTTYLKAVQAIGTDDSTKVMAQLKKTRIDDFYNKGSIRADGRNIHD 360 Query: 412 MYLYQVKSPAESKKPWDYLKLLETIPGEQAFTSVADSRCSLLKQ 455 MYLYQVKSPAESKKPWDYLKLLETIPGEQAFTSVADS+CSLLKQ Sbjct: 361 MYLYQVKSPAESKKPWDYLKLLETIPGEQAFTSVADSKCSLLKQ 404 >ref|YP_585659.1| ABC transporter periplasmic protein [Cupriavidus metallidurans CH34] gb|ABF10390.1| ABC-type transporter, periplasmic component [Cupriavidus metallidurans CH34] Length = 402 Score = 597 bits (1540), Expect = e-168, Method: Composition-based stats. Identities = 298/400 (74%), Positives = 346/400 (86%), Gaps = 2/400 (0%) Query: 58 LRRLAAACA--IAGIFAGPALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMAVADY 115 + RLA A A + G FAG A AQVS D V+IG+ITDMSG YAD DG GGLEA++MA+ D+ Sbjct: 3 MTRLAVAVAATVLGAFAGGASAQVSGDTVKIGYITDMSGLYADIDGPGGLEAVKMAIEDH 62 Query: 116 GGKVLGKPVEILSADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMAEKKR 175 GGKVLGKP+E++SADHQNKADIAA++AREW D++GLDML+GG NSAT L+MNKV EKKR Sbjct: 63 GGKVLGKPIELVSADHQNKADIAASKAREWMDQQGLDMLLGGTNSATGLAMNKVAQEKKR 122 Query: 176 VYINIGAGTARLTNEECTPYTVHYEYDTVALAKGTASAVIKQGGKSWFFLVADYAFGHSL 235 VY N+GAGTARLTNEEC+PYTVHY YDTVALAKGT SAV+KQGGK WFFL ADYAFGHSL Sbjct: 123 VYFNVGAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKKWFFLTADYAFGHSL 182 Query: 236 ANDTSAVVKANGGTVIGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSIKAAK 295 NDT+AVVKANGGTV+GS++HP +SD SSFLLQAQ+SKA ILGLANAG DT+N+IKAAK Sbjct: 183 ENDTAAVVKANGGTVVGSVRHPLSASDFSSFLLQAQSSKADILGLANAGGDTINAIKAAK 242 Query: 296 EFGVTKTMKLVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKMKKMP 355 EFG+TK MK+ GLLM INDIH+LGL N EGL+MTDSWYWD ++ +RKFA RFF KMKKMP Sbjct: 243 EFGITKNMKIAGLLMFINDIHSLGLKNTEGLLMTDSWYWDMNDDTRKFANRFFGKMKKMP 302 Query: 356 STHQAAAYSATMTYLKAVEAIGTDDATKVMAQLKKTRIDDFYNKGYIRADGRNIHDMYLY 415 S+ QAA YSA TYLKAVEA TDD KVMA+LKK +I DFYNK YIRADGRNIHDMYL Sbjct: 303 SSLQAADYSAISTYLKAVEAAKTDDPDKVMAELKKMKISDFYNKSYIRADGRNIHDMYLM 362 Query: 416 QVKSPAESKKPWDYLKLLETIPGEQAFTSVADSRCSLLKQ 455 QVK+PA+SKKPWDYLK++ TIPG+QAFT+ A+S+C+LLK+ Sbjct: 363 QVKAPADSKKPWDYLKIVTTIPGDQAFTTPAESKCALLKK 402 >ref|ZP_07675151.1| amino acid uptake ABC transporter [Ralstonia sp. 5_7_47FAA] gb|EFP66441.1| amino acid uptake ABC transporter [Ralstonia sp. 5_7_47FAA] Length = 402 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 296/401 (73%), Positives = 348/401 (86%), Gaps = 2/401 (0%) Query: 57 TLRRLAAACAIAGIFAGP--ALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMAVAD 114 TL++LA A G+ A A AQVS D V+IG+ITD+SG YAD DG GG+EA++MA+ D Sbjct: 2 TLKKLAGALIAVGLGAAAFGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIED 61 Query: 115 YGGKVLGKPVEILSADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMAEKK 174 GGKVLGKP+E+++ADHQNKADIAA++AREW D++GLDML+GG NSAT L+MNKV +EKK Sbjct: 62 AGGKVLGKPIELVTADHQNKADIAASKAREWMDQQGLDMLLGGTNSATGLAMNKVASEKK 121 Query: 175 RVYINIGAGTARLTNEECTPYTVHYEYDTVALAKGTASAVIKQGGKSWFFLVADYAFGHS 234 RV+I+IGAGTARLTNEECTPYT+HY YDTVALAKGT SAV+KQGGKSWFFL ADYAFGHS Sbjct: 122 RVFIDIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHS 181 Query: 235 LANDTSAVVKANGGTVIGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSIKAA 294 L NDT+AVVKANGGTV+GS+KHP +SD SS+LLQAQ+SKAQILGLANAG DT+NSIKAA Sbjct: 182 LENDTTAVVKANGGTVVGSVKHPLSASDFSSYLLQAQSSKAQILGLANAGGDTINSIKAA 241 Query: 295 KEFGVTKTMKLVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKMKKM 354 KEFG+TKTMK+ GLLM IND+H+LGL AEGL+MTDSWYWD ++ SRKFA R+F KMKKM Sbjct: 242 KEFGITKTMKIAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDASRKFANRYFMKMKKM 301 Query: 355 PSTHQAAAYSATMTYLKAVEAIGTDDATKVMAQLKKTRIDDFYNKGYIRADGRNIHDMYL 414 PS+ QAA YSA Y+KAV A GTDD KV+AQLKKT+IDDFY KGYIR DGR IHDMYL Sbjct: 302 PSSLQAADYSAVSNYIKAVAAAGTDDPDKVIAQLKKTKIDDFYTKGYIRQDGRAIHDMYL 361 Query: 415 YQVKSPAESKKPWDYLKLLETIPGEQAFTSVADSRCSLLKQ 455 QVK+PAESKKPWDYLK++ TIPGEQAFT+ A+S+CSL+K+ Sbjct: 362 LQVKTPAESKKPWDYLKVVATIPGEQAFTTPAESKCSLMKK 402 >ref|YP_002983150.1| extracellular ligand-binding receptor [Ralstonia pickettii 12D] gb|ACS64478.1| Extracellular ligand-binding receptor [Ralstonia pickettii 12D] Length = 402 Score = 592 bits (1526), Expect = e-167, Method: Composition-based stats. Identities = 296/401 (73%), Positives = 348/401 (86%), Gaps = 2/401 (0%) Query: 57 TLRRLAAACAIAGIFAGP--ALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMAVAD 114 TL++LA A G+ A A AQVS D V+IG+ITD+SG YAD DG GG+EA++MA+ D Sbjct: 2 TLKKLAGALMAIGLGAAAFGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIED 61 Query: 115 YGGKVLGKPVEILSADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMAEKK 174 GGKVLGKP+E+++ADHQNKADIAA++AREW D++GLDML+GG NSAT L+MNKV +EKK Sbjct: 62 AGGKVLGKPIELVTADHQNKADIAASKAREWMDQQGLDMLLGGTNSATGLAMNKVASEKK 121 Query: 175 RVYINIGAGTARLTNEECTPYTVHYEYDTVALAKGTASAVIKQGGKSWFFLVADYAFGHS 234 RV+I+IGAGTARLTNEECTPYT+HY YDTVALAKGT SAV+KQGGKSWFFL ADYAFGHS Sbjct: 122 RVFIDIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHS 181 Query: 235 LANDTSAVVKANGGTVIGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSIKAA 294 L NDT+AVVKANGGTV+GS+KHP +SD SS+LLQAQ+SKAQILGLANAG DT+NSIKAA Sbjct: 182 LENDTTAVVKANGGTVVGSVKHPLSASDFSSYLLQAQSSKAQILGLANAGGDTINSIKAA 241 Query: 295 KEFGVTKTMKLVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKMKKM 354 KEFG+TKTMK+ GLLM IND+H+LGL AEGL+MTDSWYWD ++ SRKFA R+F KMKKM Sbjct: 242 KEFGITKTMKIAGLLMFINDVHSLGLQTAEGLLMTDSWYWDMNDASRKFANRYFMKMKKM 301 Query: 355 PSTHQAAAYSATMTYLKAVEAIGTDDATKVMAQLKKTRIDDFYNKGYIRADGRNIHDMYL 414 PS+ QAA YSA Y+KAV A GTDD KV+AQLKKT+IDDFY KGYIR DGR IHDMYL Sbjct: 302 PSSLQAADYSAVSNYIKAVAAAGTDDPDKVIAQLKKTKIDDFYTKGYIRQDGRAIHDMYL 361 Query: 415 YQVKSPAESKKPWDYLKLLETIPGEQAFTSVADSRCSLLKQ 455 QVK+PAESKKPWDYLK++ TIPGEQAFT+ A+S+CSL+K+ Sbjct: 362 LQVKTPAESKKPWDYLKVVATIPGEQAFTTPAESKCSLMKK 402 >ref|YP_297571.1| extracellular ligand-binding receptor [Ralstonia eutropha JMP134] gb|AAZ62727.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Ralstonia eutropha JMP134] Length = 402 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 300/398 (75%), Positives = 347/398 (87%), Gaps = 2/398 (0%) Query: 60 RLAAACA--IAGIFAGPALAQVSNDAVRIGFITDMSGPYADTDGLGGLEAIRMAVADYGG 117 RLAAA A + G + A AQVS D V+IGFITD+SG YAD DG GG+EAI+MA+ D GG Sbjct: 5 RLAAAMAAIVMGAVSFNAAAQVSGDTVKIGFITDLSGLYADIDGQGGVEAIKMAIEDAGG 64 Query: 118 KVLGKPVEILSADHQNKADIAATRAREWADERGLDMLIGGVNSATALSMNKVMAEKKRVY 177 KVLGKP+E+++ADHQNKADIAA++AREW D++GLD+LIGG NS TAL+MNKV AEKKRVY Sbjct: 65 KVLGKPIELVTADHQNKADIAASKAREWMDQQGLDVLIGGTNSGTALAMNKVAAEKKRVY 124 Query: 178 INIGAGTARLTNEECTPYTVHYEYDTVALAKGTASAVIKQGGKSWFFLVADYAFGHSLAN 237 IN GAGTARLTNEEC+PYTVHY YDTVALAKGT SAV+KQGGKSWFFL ADYAFGHSL + Sbjct: 125 INNGAGTARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLES 184 Query: 238 DTSAVVKANGGTVIGSIKHPPQSSDLSSFLLQAQASKAQILGLANAGEDTVNSIKAAKEF 297 DT+AVVKANGGTV+GS++HP +SD SSFLLQAQASKAQILGLANAG DT+NSIKAAKEF Sbjct: 185 DTAAVVKANGGTVLGSVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINSIKAAKEF 244 Query: 298 GVTKTMKLVGLLMVINDIHALGLANAEGLMMTDSWYWDKDEPSRKFAERFFQKMKKMPST 357 G+TKTMK+ GLLM INDIH+LGL N EGL+MTDSWYWD ++ +RKFA R+F KMKKMPS+ Sbjct: 245 GITKTMKIAGLLMFINDIHSLGLKNTEGLLMTDSWYWDMNDDTRKFANRYFSKMKKMPSS 304 Query: 358 HQAAAYSATMTYLKAVEAIGTDDATKVMAQLKKTRIDDFYNKGYIRADGRNIHDMYLYQV 417 QAA YSA TYLKAV A TDD KVMA+LKKT+I+DFY KGYIR DGR IHDMYL QV Sbjct: 305 LQAADYSAVSTYLKAVAAAKTDDPDKVMAELKKTKINDFYTKGYIRQDGRGIHDMYLMQV 364 Query: 418 KSPAESKKPWDYLKLLETIPGEQAFTSVADSRCSLLKQ 455 KSPAESKKPWDYLK++ TIPG+QAFT+VA+S+CS++K+ Sbjct: 365 KSPAESKKPWDYLKIVATIPGDQAFTTVAESKCSMMKK 402