BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3652.p (672 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776429.1| transcription regulator protein [Herbaspiril... 798 0.0 ref|YP_004152418.1| GntR family transcriptional regulator [Vario... 563 e-158 ref|YP_003909447.1| GntR family transcriptional regulator [Burkh... 554 e-155 ref|ZP_06687627.1| GntR family transcriptional regulator [Achrom... 553 e-155 ref|YP_004348405.1| GntR family regulatory protein [Burkholderia... 549 e-154 >ref|YP_003776429.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64521.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 469 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 391/452 (86%), Positives = 415/452 (91%) Query: 213 AQTLTQTLVQSIRRQIADGAYPPGSRLPSIRELAARHGCAKNTIVNVFEELTAQGVVEPR 272 + TLT TLVQ IRRQIA+G Y PGSRLPSIRE+AARHGCAKNTIVNVF+ELTA G+ EPR Sbjct: 5 STTLTSTLVQLIRRQIAEGVYAPGSRLPSIREMAARHGCAKNTIVNVFDELTALGLAEPR 64 Query: 273 RGSGFFVCATPPRPKEEEEGSLSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDVRL 332 RG+GFFVC PPRPKE+EEG+LSRAMDVVWLMREQLKHDPG LRLGDGFPPVEWLHDVRL Sbjct: 65 RGAGFFVCVAPPRPKEDEEGNLSRAMDVVWLMREQLKHDPGQLRLGDGFPPVEWLHDVRL 124 Query: 333 DKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVQKLAQHGIEAATSQIVLTHGANQALDIV 392 DKFHQKVVRTG+GALFGYGSRFGYLPLRQHLV KLAQHGIEA T QIVLTHGANQALDIV Sbjct: 125 DKFHQKVVRTGIGALFGYGSRFGYLPLRQHLVHKLAQHGIEAGTGQIVLTHGANQALDIV 184 Query: 393 IRNFIRPGDRVLVDEPGYYMLYGKLKLSGARIVGIPRHADGPDIEALERELKLPGKPPLF 452 IR+FIRPGDRVLVDEPGYYMLYGKLKLSGARI+GIPR DGPD+ LEREL PGKPPLF Sbjct: 185 IRHFIRPGDRVLVDEPGYYMLYGKLKLSGARIIGIPRLPDGPDVAVLERELHRPGKPPLF 244 Query: 453 FTQSLAHNPTASDTSPHKAHKILQLADRHDALIVENDAFADFKPATAPRIATLDQLRRTL 512 FTQSLAHNPTASDTSPHKAH+ILQLADR+ A+IVENDAFADFKPATAPRIATLDQLRRT+ Sbjct: 245 FTQSLAHNPTASDTSPHKAHRILQLADRYQAIIVENDAFADFKPATAPRIATLDQLRRTV 304 Query: 513 YIGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERTLDVILSDGHFSRHT 572 Y+GSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERTLDVILSDGHFSRHT Sbjct: 305 YVGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERTLDVILSDGHFSRHT 364 Query: 573 ARLRERLAHATDAACHQLQQLGAELFCAPQQSMYLWARFPAFTDARPLAQALMQHHVVLA 632 ARLRERLA AT+ A QL+ LGAELFCAPQQ+MYLWARFP F DA+ LAQ LMQ +VLA Sbjct: 365 ARLRERLAQATEQARAQLEGLGAELFCAPQQAMYLWARFPWFEDAKRLAQRLMQRQIVLA 424 Query: 633 PGSIFHVDPEHSVPWSRFNVGQLSDPRFAAAM 664 PGSIFHVD E + PWSRFNVG L+D RFA AM Sbjct: 425 PGSIFHVDTEQTQPWSRFNVGLLADARFADAM 456 >ref|YP_004152418.1| GntR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU34307.1| transcriptional regulator, GntR family with aminotransferase domain [Variovorax paradoxus EPS] Length = 461 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 281/459 (61%), Positives = 345/459 (75%), Gaps = 3/459 (0%) Query: 215 TLTQTLVQSIRRQIADGAYPPGSRLPSIRELAARHGCAKNTIVNVFEELTAQGVVEPRRG 274 T+ +L ++ RQIA GAY G +LPS+RELA HG AKNT+V FE L ++G+VEPRRG Sbjct: 3 TIADSLADTLARQIASGAYKAGDKLPSLRELAQLHGYAKNTVVAAFELLVSRGLVEPRRG 62 Query: 275 SGFFVCA--TPPRPKEEEEGSLSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDVRL 332 SG+FV A T P+P EE+ GSL RAMD+VWLMREQLK P + +GDGFPPVEWL DVRL Sbjct: 63 SGYFVLAQSTTPKPPEEDAGSLGRAMDIVWLMREQLKTQPDAVAVGDGFPPVEWLADVRL 122 Query: 333 DKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVQKLAQHGIEAATSQIVLTHGANQALDIV 392 DK+H KVVRTG+GALF YGSRFGY PLR HLV+KLA GI A QIVLTHGAN+A+DIV Sbjct: 123 DKYHPKVVRTGLGALFRYGSRFGYAPLRDHLVRKLADFGIGAEPRQIVLTHGANEAMDIV 182 Query: 393 IRNFIRPGDRVLVDEPGYYMLYGKLKLSGARIVGIPRHADGPDIEALERELKLPGKPPLF 452 IR F+ PG +VLVD+PGYY L+GKLKL+GA+++ +PR ADGPD++ LE +L + +P LF Sbjct: 183 IRYFVPPGGKVLVDDPGYYPLFGKLKLAGAQMLAVPRLADGPDLDVLE-QLLIAERPRLF 241 Query: 453 FTQSLAHNPTASDTSPHKAHKILQLADRHDALIVENDAFADFKPATAPRIATLDQLRRTL 512 FTQSLAHNPT SD SP KA ++LQLA ++D LIVEND ADFKP PR++ LDQL RT+ Sbjct: 242 FTQSLAHNPTGSDISPAKAFRVLQLAQKYDLLIVENDPLADFKPTALPRLSALDQLERTI 301 Query: 513 YIGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERTLDVILSDGHFSRHT 572 YIGSFSKS SAALRVGFIAC DLASDLAD+K L+H+SSSEY ERT+DVILS+GH+ RH Sbjct: 302 YIGSFSKSFSAALRVGFIACGADLASDLADLKALIHVSSSEYSERTVDVILSEGHYQRHL 361 Query: 573 ARLRERLAHATDAACHQLQQLGAELFCAPQQSMYLWARFPAFTDARPLAQALMQHHVVLA 632 RL+ RL AT +A + E+F QS+Y+WA P D+ A+ L+ +V+A Sbjct: 362 NRLQNRLGEATRSALQLFDSVDTEVFARTPQSLYIWAALPGVADSLAFAKELLPRKIVMA 421 Query: 633 PGSIFHVDPEHSVPWSRFNVGQLSDPRFAAAMAALLDQQ 671 PG IF VD WSRFNVG ++DPRFA A+ L ++ Sbjct: 422 PGRIFSVDSTQVSRWSRFNVGAMADPRFAKALRTALRRR 460 >ref|YP_003909447.1| GntR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN60156.1| transcriptional regulator, GntR family with aminotransferase domain [Burkholderia sp. CCGE1003] Length = 462 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 268/451 (59%), Positives = 347/451 (76%), Gaps = 2/451 (0%) Query: 215 TLTQTLVQSIRRQIADGAYPPGSRLPSIRELAARHGCAKNTIVNVFEELTAQGVVEPRRG 274 +L+ ++ ++ RQI +G +P G++LPSIRE A GC+KNT+++ FE LTA G++EPRRG Sbjct: 8 SLSSSMADTLARQIEEGVFPAGTKLPSIREYAEASGCSKNTVISAFETLTANGLIEPRRG 67 Query: 275 SGFFVCATPPRPKEEEEGS-LSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDVRLD 333 SGF+V E E+ L RAMD VWLMREQL+ P L LG+GFPP++WL RLD Sbjct: 68 SGFYVARQVKAAAEPEDARVLDRAMDTVWLMREQLQVKPAVLNLGEGFPPIDWLEGTRLD 127 Query: 334 KFHQKVVRTGMGALFGYGSRFGYLPLRQHLVQKLAQHGIEAATSQIVLTHGANQALDIVI 393 ++HQ+VVRTG+ +LF YGSR+GYLPLRQ L QKL+ + I+A SQIVLTHGANQA+D+V+ Sbjct: 128 QYHQRVVRTGVASLFRYGSRYGYLPLRQSLQQKLSGYEIDAPPSQIVLTHGANQAMDLVL 187 Query: 394 RNFIRPGDRVLVDEPGYYMLYGKLKLSGARIVGIPRHADGPDIEALERELKLPGKPPLFF 453 R F+RPGD VLVD+PGYY L+GKLKLSGA I+G+PR DGP++ LER + + +P LFF Sbjct: 188 RYFVRPGDAVLVDDPGYYPLFGKLKLSGANIIGVPREVDGPNLAELERCM-VEHRPKLFF 246 Query: 454 TQSLAHNPTASDTSPHKAHKILQLADRHDALIVENDAFADFKPATAPRIATLDQLRRTLY 513 TQS+ HNPT +DTS KA++ILQLA+ HD +IVENDAFAD +P + RIATLDQLRRT+Y Sbjct: 247 TQSVGHNPTGTDTSAAKAYRILQLAEHHDTVIVENDAFADLRPRSLTRIATLDQLRRTIY 306 Query: 514 IGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERTLDVILSDGHFSRHTA 573 IGSFSKSVSAALRVGF+AC+ LASDLAD+KML+H+SSSEY ERTL I+SDGHF RHT Sbjct: 307 IGSFSKSVSAALRVGFLACNAALASDLADVKMLIHVSSSEYSERTLAAIVSDGHFMRHTN 366 Query: 574 RLRERLAHATDAACHQLQQLGAELFCAPQQSMYLWARFPAFTDARPLAQALMQHHVVLAP 633 +L+E+L AT A + L+++GA +F QSMYLWA P + D+ LA+A++ H V+LAP Sbjct: 367 QLQEKLRRATAAGKNVLKKVGASIFKESDQSMYLWASLPGWPDSMKLAKAMLNHGVILAP 426 Query: 634 GSIFHVDPEHSVPWSRFNVGQLSDPRFAAAM 664 G++F + P+ RFNVG LSD RF +A+ Sbjct: 427 GAVFSPTSDKVSPYCRFNVGYLSDERFLSAL 457 >ref|ZP_06687627.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75392.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 473 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 279/451 (61%), Positives = 339/451 (75%), Gaps = 3/451 (0%) Query: 216 LTQTLVQSIRRQIADGAYPPGSRLPSIRELAARHGCAKNTIVNVFEELTAQGVVEPRRGS 275 + ++L + I +QIADG Y PG +LPS+REL+ H AKNT+V FE L AQG+VEPRRGS Sbjct: 16 IAESLAKLIGQQIADGVYRPGDKLPSLRELSQLHRYAKNTVVVAFEMLVAQGLVEPRRGS 75 Query: 276 GFFVCAT--PPRPKEEEEGSLSRAMDVVWLMREQLKHDPGHLRLGDGFPPVEWLHDVRLD 333 GFFV + +EE G LSRAMD+VWLMREQLK P ++ GDGFPPV+WL D+R+D Sbjct: 76 GFFVLDGDYARKAADEEPGQLSRAMDIVWLMREQLKTQPDAVQAGDGFPPVDWLADMRMD 135 Query: 334 KFHQKVVRTGMGALFGYGSRFGYLPLRQHLVQKLAQHGIEAATSQIVLTHGANQALDIVI 393 ++HQKVVRTG+GALF YGSRFGY PLR+ LV+KL G+ A SQ+VLTHGAN+A+D+VI Sbjct: 136 RYHQKVVRTGLGALFRYGSRFGYGPLRESLVRKLGDVGVNVAPSQLVLTHGANEAMDLVI 195 Query: 394 RNFIRPGDRVLVDEPGYYMLYGKLKLSGARIVGIPRHADGPDIEALERELKLPGKPPLFF 453 R F+ PG VLVD PGYY L+GKLKL+G R++G+PR DGPD+ ALE L+ KP LFF Sbjct: 196 RYFVPPGATVLVDNPGYYPLFGKLKLAGVRMLGVPRLPDGPDVVALEALLQRE-KPRLFF 254 Query: 454 TQSLAHNPTASDTSPHKAHKILQLADRHDALIVENDAFADFKPATAPRIATLDQLRRTLY 513 TQSLAHNPT SD S KA+K+LQLA+R++ +IVENDA ADFKP +A R++ LDQL RT+Y Sbjct: 255 TQSLAHNPTGSDISLGKAYKVLQLAERYNLMIVENDALADFKPTSAVRLSALDQLERTIY 314 Query: 514 IGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYCERTLDVILSDGHFSRHTA 573 IGSFSKS SAALRVGFIAC+ LASDLAD+K LVH+SSSEYCER +DV+L DGH+ RH A Sbjct: 315 IGSFSKSFSAALRVGFIACNAALASDLADLKALVHVSSSEYCERMVDVMLRDGHYERHLA 374 Query: 574 RLRERLAHATDAACHQLQQLGAELFCAPQQSMYLWARFPAFTDARPLAQALMQHHVVLAP 633 RLR+RL AT A L LGA +F P SMYLWA FP D+ LA LM V++AP Sbjct: 375 RLRQRLEAATGHALQVLDSLGARVFARPSSSMYLWAAFPGVEDSLTLAADLMPEKVIMAP 434 Query: 634 GSIFHVDPEHSVPWSRFNVGQLSDPRFAAAM 664 G +F VDP PWSR NVG + PRF A + Sbjct: 435 GRVFSVDPTAVSPWSRCNVGAIGSPRFHAVL 465 >ref|YP_004348405.1| GntR family regulatory protein [Burkholderia gladioli BSR3] gb|AEA62893.1| GntR family regulatory protein [Burkholderia gladioli BSR3] Length = 470 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 285/472 (60%), Positives = 352/472 (74%), Gaps = 14/472 (2%) Query: 206 IRRSNAMAQTLTQTLVQSIRRQIADGAYPPGSRLPSIRELAARHGCAKNTIVNVFEELTA 265 IRR+ TL++ + ++ RQI +G P GS+LPSIRE A GC+KNT+V+ F+ LTA Sbjct: 2 IRRAGT---TLSEGIADNLARQIEEGILPAGSKLPSIREYADASGCSKNTVVSAFDILTA 58 Query: 266 QGVVEPRRGSGFFVCATPPRPKE-------EEEG---SLSRAMDVVWLMREQLKHDPGHL 315 G++EPRRGSGFFVC P E EG +L RAMDVVWLMREQL L Sbjct: 59 NGLIEPRRGSGFFVCRRPGGGNGAAAAAIAESEGGATTLDRAMDVVWLMREQLHESANVL 118 Query: 316 RLGDGFPPVEWLHDVRLDKFHQKVVRTGMGALFGYGSRFGYLPLRQHLVQKLAQHGIEAA 375 LG+GFPPV+WL RLD +HQ+VVRTG+ +LF YGSR+GYLPLRQ L QKLA + I+A Sbjct: 119 NLGEGFPPVDWLAKTRLDLYHQRVVRTGVASLFRYGSRYGYLPLRQSLQQKLAGYEIDAQ 178 Query: 376 TSQIVLTHGANQALDIVIRNFIRPGDRVLVDEPGYYMLYGKLKLSGARIVGIPRHADGPD 435 +QIVLTHGANQA+DIV+R F+RPGD VLVD+PGYY L+GKLKLSGARIVGIPR DGP Sbjct: 179 PAQIVLTHGANQAIDIVLRYFVRPGDAVLVDDPGYYPLFGKLKLSGARIVGIPRETDGPS 238 Query: 436 IEALERELKLPGKPPLFFTQSLAHNPTASDTSPHKAHKILQLADRHDALIVENDAFADFK 495 I ALE L +P LFFTQS+ HNPTA+DTS KAH+ILQLA+ HD ++VE+DA AD K Sbjct: 239 IAALEAALAE-HRPRLFFTQSVGHNPTATDTSAAKAHRILQLAEAHDLMLVEDDALADLK 297 Query: 496 PATAPRIATLDQLRRTLYIGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEYC 555 P T RIATLDQLRRT+Y+GSF+KSVSAALRVGF+AC LASDLAD+KML+H+SSSEYC Sbjct: 298 PRTLTRIATLDQLRRTIYVGSFAKSVSAALRVGFLACEAGLASDLADVKMLMHVSSSEYC 357 Query: 556 ERTLDVILSDGHFSRHTARLRERLAHATDAACHQLQQLGAELFCAPQQSMYLWARFPAFT 615 ERTLD I+SDGHF RHT L+++L AT+A L++LGAE+F +QS+YLWA P + Sbjct: 358 ERTLDAIVSDGHFLRHTNFLQDKLRRATEAGILALRRLGAEIFRESEQSLYLWASLPGWP 417 Query: 616 DARPLAQALMQHHVVLAPGSIFHVDPEHSVPWSRFNVGQLSDPRFAAAMAAL 667 D+ LAQAL++ V+LAPG++F + + RFNV L+D RF AA+ A+ Sbjct: 418 DSMQLAQALLERGVILAPGAVFAPGADRLSAYCRFNVAYLADKRFVAALKAV 469