BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3650.p (612 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_04943480.1| Glycine/D-amino acid oxidase [Burkholderia ce... 521 e-145 ref|YP_371573.1| hypothetical protein Bcep18194_B0815 [Burkholde... 503 e-140 ref|YP_623339.1| hypothetical protein Bcen_3472 [Burkholderia ce... 501 e-139 ref|YP_001779009.1| hypothetical protein Bcenmc03_5392 [Burkhold... 500 e-139 ref|YP_002234690.1| putative lipoprotein [Burkholderia cenocepac... 498 e-138 >ref|ZP_04943480.1| Glycine/D-amino acid oxidase [Burkholderia cenocepacia PC184] gb|EAY66651.1| Glycine/D-amino acid oxidase [Burkholderia cenocepacia PC184] Length = 763 Score = 521 bits (1343), Expect = e-145, Method: Composition-based stats. Identities = 310/619 (50%), Positives = 389/619 (62%), Gaps = 21/619 (3%) Query: 1 MGLHPGFAAARLCSTHHLCAADALSQRGHHGRDVPLPARHAACGGRAQPAQQPVAGALLR 60 +GL A RL L DAL++ + RDVPLP RHA A+ Q+P A A LR Sbjct: 156 LGLRDRRQAPRLHGADALLGVDALARCANGRRDVPLPGRHAGAVDVAERTQRPAARAPLR 215 Query: 61 AGLASGGALMQRRSFILGAAVAAGAATLGAGGVLQKWREVDPGIRTPGRAEGHFLRDLAR 120 L + ALM RR+F++ +A A+ AA G W E P + PG EGH LRD A Sbjct: 216 RRLEARAALMDRRTFLVASAAASLAACGRTG-----WIETTPQVGYPGMREGHALRDHAA 270 Query: 121 HPGRLPVPSEIIETDIAILGSGVAGLTAAWKLERSGHQDFLLIDGPEADGNAAGARYGQA 180 LP PS IETD+AILG+G AGL+ AW+L R+GH F ++ GPE GNAAG R+G Sbjct: 271 ----LPAPSGTIETDVAILGAGAAGLSCAWQLARAGHTRFTVLAGPEFGGNAAGGRFGDL 326 Query: 181 GEYACPTGAHYLPLPSQECLHVREILSDLSVILRDAQAERPYYDERYLLHAPDERLLVDG 240 G P GAHYLPLPS E H+R++L+DL +I + RP YDER L+HAPDERL + G Sbjct: 327 GY---PKGAHYLPLPSLESAHLRDMLADLGIIESAPFSVRPVYDERALVHAPDERLFIGG 383 Query: 241 HWYEGLLPP--LQPGEQEELDRFNRSMDSLRASRDARGRRAFMLPSAQASDDPRWLALDR 298 W +G++P L + RF D LR +R A GR+ F +P A++S DPRW ALDR Sbjct: 384 QWQDGIVPTTGLDADALAQQARFFAYTDGLRTARGADGRKVFCIPIAESSRDPRWRALDR 443 Query: 299 ITMRQWLEQEGYRSPALHWLANYGCRDDYGARYDQVSAWAGLHYFCSRSGQAANAADGAW 358 + R+WL EGY + ALHW NY CRDDYGA Y+ VSAWAGLHYF SR G A +A+DGA Sbjct: 444 RSFRRWLLDEGYTAKALHWYLNYCCRDDYGAGYEHVSAWAGLHYFSSRGGHAGDASDGAV 503 Query: 359 LTWPGGLQPLAEGLARRIGPR------RRPGTVLQLQETSRGIEALCM-VLRDGQATSFL 411 LTWP GL + L+ I R R G ++ E + G++ LC V DG ++F Sbjct: 504 LTWPDGLHTMVTKLSDSITARTGSNAWSRDGFAVRATERAGGVDVLCARVGHDGTLSTFT 563 Query: 412 LRARKAICAMPLFVAARITPAMATLGFDPAQHLPARAPWLVANFLLKRFPKEKPEAPLSW 471 L+AR+ +CAMPLFVAAR+ P +A GF+PA+ LP RAPWLV+NFLL P E+ PL+W Sbjct: 564 LKARRVVCAMPLFVAARVFPQLAAYGFEPARDLPPRAPWLVSNFLLDGMPAEEAGVPLAW 623 Query: 472 DNVVQREPGLGYVVSTHQDIRVHPPQQTVFTSYVALSHLTPDQARRWMDQATPAQLLALA 531 DNVV GLGYVVSTHQ IR+ PP ++VF++Y ALS TPD RRW+ QA P L A Sbjct: 624 DNVVYDGAGLGYVVSTHQLIRMSPPTRSVFSAYQALSTQTPDDTRRWLAQAKPDALREQA 683 Query: 532 MEDLQQAYGWQFGAAVERVDITLRAHAMAIPTPGFRSNAGLRKLQQADGKILFAHADLSG 591 DLQ YG + ++IT+R HAMA P GF S GL L+ ADG ++FAHADLSG Sbjct: 684 ALDLQAVYGRELWKHATALEITVRGHAMATPDVGFLSRPGLLALRDADGPVVFAHADLSG 743 Query: 592 FSLFEEASWWGYQAALKAL 610 SLFEEAS+WG +AA + L Sbjct: 744 LSLFEEASYWGMRAAHRVL 762 >ref|YP_371573.1| hypothetical protein Bcep18194_B0815 [Burkholderia sp. 383] gb|ABB10929.1| hypothetical protein Bcep18194_B0815 [Burkholderia sp. 383] Length = 539 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 285/550 (51%), Positives = 354/550 (64%), Gaps = 21/550 (3%) Query: 70 MQRRSFILGAAVAAGAATLGAGGVLQKWREVDPGIRTPGRAEGHFLRDLARHPGRLPVPS 129 M RR+F++ +A A+ AA G W E P + PG EGH LRD A LP PS Sbjct: 1 MDRRTFLVASAAASLAACGRTG-----WIETTPHVGYPGMREGHALRDHAT----LPPPS 51 Query: 130 EIIETDIAILGSGVAGLTAAWKLERSGHQDFLLIDGPEADGNAAGARYGQAGEYACPTGA 189 IETDIAILG+G AGL+ AW+L R+GH+ F ++ GPE GNAAG R+G G P GA Sbjct: 52 GTIETDIAILGAGAAGLSCAWQLARAGHKRFTVLAGPEFGGNAAGGRFGDLGY---PKGA 108 Query: 190 HYLPLPSQECLHVREILSDLSVILRDAQAERPYYDERYLLHAPDERLLVDGHWYEGLLPP 249 HYLPLPS E H+R++L+DL VI + RP YDER L+HAPDERL + G W +G++P Sbjct: 109 HYLPLPSLESTHLRDMLADLGVIESAPFSARPVYDERVLVHAPDERLFIAGQWQDGIVPT 168 Query: 250 LQPGEQE--ELDRFNRSMDSLRASRDARGRRAFMLPSAQASDDPRWLALDRITMRQWLEQ 307 G E + RF D LR +R A GR+ F +P A++S DPRW ALDR + RQWL Sbjct: 169 AGLGADELAQQARFFAYTDGLRTARGADGRKVFCIPIAESSRDPRWRALDRRSFRQWLLD 228 Query: 308 EGYRSPALHWLANYGCRDDYGARYDQVSAWAGLHYFCSRSGQAANAADGAWLTWPGGLQP 367 EGY + ALHW NY CRDDYGA Y++VSAWAGLHYF SR G A +A+DGA LTWP GL Sbjct: 229 EGYTAKALHWYLNYCCRDDYGAGYERVSAWAGLHYFSSRGGHAGDASDGAVLTWPDGLHT 288 Query: 368 LAEGLARRIGPR------RRPGTVLQLQETSRGIEALCMVL-RDGQATSFLLRARKAICA 420 + L I R R G ++ E + G++ LC + DG ++F+L+AR+ +CA Sbjct: 289 MVTKLTDSITTRTGSNAWSRDGFAVRATERAGGVDVLCARIGNDGALSTFMLKARRVVCA 348 Query: 421 MPLFVAARITPAMATLGFDPAQHLPARAPWLVANFLLKRFPKEKPEAPLSWDNVVQREPG 480 MPLFVAAR+ P +A GFDPA+ LP RAPWLV+NFLL P E+ PL+WDNVV G Sbjct: 349 MPLFVAARVFPQLAAYGFDPARDLPPRAPWLVSNFLLDGMPAEEAGVPLAWDNVVYDGAG 408 Query: 481 LGYVVSTHQDIRVHPPQQTVFTSYVALSHLTPDQARRWMDQATPAQLLALAMEDLQQAYG 540 LGYVVSTHQ IR+ PP ++VF++Y ALS PD RRW+ QA P L A DLQ YG Sbjct: 409 LGYVVSTHQLIRMSPPTRSVFSAYQALSTQAPDDTRRWLAQAQPDALREQAAIDLQAVYG 468 Query: 541 WQFGAAVERVDITLRAHAMAIPTPGFRSNAGLRKLQQADGKILFAHADLSGFSLFEEASW 600 ++IT+R HAMA P GF S GL L+ ADG ++FAHADLSG SLFEEAS+ Sbjct: 469 RNLWKHATALEITVRGHAMATPDVGFLSRPGLLALRDADGPVVFAHADLSGLSLFEEASY 528 Query: 601 WGYQAALKAL 610 WG AA + L Sbjct: 529 WGVLAARRVL 538 >ref|YP_623339.1| hypothetical protein Bcen_3472 [Burkholderia cenocepacia AU 1054] ref|YP_838521.1| hypothetical protein Bcen2424_4894 [Burkholderia cenocepacia HI2424] gb|ABF78366.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054] gb|ABK11628.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424] Length = 539 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 284/550 (51%), Positives = 353/550 (64%), Gaps = 21/550 (3%) Query: 70 MQRRSFILGAAVAAGAATLGAGGVLQKWREVDPGIRTPGRAEGHFLRDLARHPGRLPVPS 129 M RR+F++ +A A+ AA G W E P + PG EGH LRD A LP PS Sbjct: 1 MDRRTFLVASAAASLAACGRTG-----WIETTPQVGYPGMREGHALRDHAT----LPAPS 51 Query: 130 EIIETDIAILGSGVAGLTAAWKLERSGHQDFLLIDGPEADGNAAGARYGQAGEYACPTGA 189 IETD+AILG+G AGL+ AW+L R+GH F ++ GPE GNAAG +G G P GA Sbjct: 52 GTIETDVAILGAGAAGLSCAWQLARAGHTRFTVLAGPEFGGNAAGGHFGDLGY---PKGA 108 Query: 190 HYLPLPSQECLHVREILSDLSVILRDAQAERPYYDERYLLHAPDERLLVDGHWYEGLLPP 249 HYLPLPS E H+R++L+DL VI + RP YDER L+HAPDERL + G W +G++P Sbjct: 109 HYLPLPSLESAHLRDMLADLGVIESAPFSVRPVYDERALVHAPDERLFIGGQWQDGIVPT 168 Query: 250 --LQPGEQEELDRFNRSMDSLRASRDARGRRAFMLPSAQASDDPRWLALDRITMRQWLEQ 307 L + RF D LR +R A GR+ F +P A++S DPRW ALDR + RQWL Sbjct: 169 TGLDADALAQQARFFAYTDGLRTARGADGRKVFCIPIAESSRDPRWRALDRRSFRQWLRD 228 Query: 308 EGYRSPALHWLANYGCRDDYGARYDQVSAWAGLHYFCSRSGQAANAADGAWLTWPGGLQP 367 EGY + ALHW NY CRDDYGA Y+ VSAWAGLHYF SR G A +A+DGA LTWP GL Sbjct: 229 EGYTAKALHWYLNYCCRDDYGAGYEHVSAWAGLHYFSSRGGHAGDASDGAVLTWPDGLHT 288 Query: 368 LAEGLARRIGPR------RRPGTVLQLQETSRGIEALCM-VLRDGQATSFLLRARKAICA 420 + L+ I R R G ++ E + G++ LC V DG ++F L+AR+ +CA Sbjct: 289 MVTKLSDSITARTGSNAWSRDGFAVRATERAGGVDVLCARVGHDGTLSTFTLKARRVVCA 348 Query: 421 MPLFVAARITPAMATLGFDPAQHLPARAPWLVANFLLKRFPKEKPEAPLSWDNVVQREPG 480 MPLFVAAR+ P +AT GF+PA+ LP RAPWLV+NFLL P E+ PL+WDNVV G Sbjct: 349 MPLFVAARVFPQLATYGFEPARDLPPRAPWLVSNFLLDGMPAEEAGVPLAWDNVVYDGAG 408 Query: 481 LGYVVSTHQDIRVHPPQQTVFTSYVALSHLTPDQARRWMDQATPAQLLALAMEDLQQAYG 540 LGYVVSTHQ IR+ PP ++VF++Y ALS TPD RRW+ QA P L A DLQ YG Sbjct: 409 LGYVVSTHQLIRMSPPTRSVFSAYQALSTQTPDDTRRWLAQAKPDALREQAALDLQAVYG 468 Query: 541 WQFGAAVERVDITLRAHAMAIPTPGFRSNAGLRKLQQADGKILFAHADLSGFSLFEEASW 600 + ++IT+R HAMA P GF S GL L+ ADG ++FAHADLSG SLFEEAS+ Sbjct: 469 RELWKHATALEITVRGHAMATPDVGFLSRPGLLALRDADGPVVFAHADLSGLSLFEEASY 528 Query: 601 WGYQAALKAL 610 WG AA + L Sbjct: 529 WGMLAAHRVL 538 >ref|YP_001779009.1| hypothetical protein Bcenmc03_5392 [Burkholderia cenocepacia MC0-3] gb|ACA94519.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3] Length = 539 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 283/550 (51%), Positives = 353/550 (64%), Gaps = 21/550 (3%) Query: 70 MQRRSFILGAAVAAGAATLGAGGVLQKWREVDPGIRTPGRAEGHFLRDLARHPGRLPVPS 129 M RR+F++ +A A+ AA G W E P + PG EGH LRD A LP PS Sbjct: 1 MDRRTFLVASAAASLAACGRTG-----WIETTPQVGYPGMREGHALRDHAT----LPAPS 51 Query: 130 EIIETDIAILGSGVAGLTAAWKLERSGHQDFLLIDGPEADGNAAGARYGQAGEYACPTGA 189 IETD+AILG+G AGL+ AW+L R+GH F ++ GPE GNAAG +G G P GA Sbjct: 52 GTIETDVAILGAGAAGLSCAWQLARAGHTRFTVLAGPEFGGNAAGGHFGDLGY---PKGA 108 Query: 190 HYLPLPSQECLHVREILSDLSVILRDAQAERPYYDERYLLHAPDERLLVDGHWYEGLLPP 249 HYLPLPS E H+R++L+DL VI + RP YDER L+HAPDERL + G W +G++P Sbjct: 109 HYLPLPSLESAHLRDMLADLGVIESAPFSVRPVYDERALVHAPDERLFIGGQWQDGIVPT 168 Query: 250 --LQPGEQEELDRFNRSMDSLRASRDARGRRAFMLPSAQASDDPRWLALDRITMRQWLEQ 307 L + RF D LR +R A GR+ F +P A++S DPRW ALDR + RQWL Sbjct: 169 TGLDADALAQQARFFAYTDGLRTARGADGRKVFCIPIAESSRDPRWRALDRRSFRQWLRD 228 Query: 308 EGYRSPALHWLANYGCRDDYGARYDQVSAWAGLHYFCSRSGQAANAADGAWLTWPGGLQP 367 EGY + ALHW NY CRDDYGA Y+ VSAWAGLHYF SR G A +A+DGA LTWP GL Sbjct: 229 EGYTAKALHWYLNYCCRDDYGAGYEHVSAWAGLHYFSSRGGHAGDASDGAVLTWPDGLHT 288 Query: 368 LAEGLARRIGPR------RRPGTVLQLQETSRGIEALCM-VLRDGQATSFLLRARKAICA 420 + L+ I R R G ++ E + G++ LC V DG ++F+L+AR+ +CA Sbjct: 289 MVTKLSDSITARTGSNAWSRDGFAVRATERAGGVDVLCARVGHDGTLSTFMLKARRVVCA 348 Query: 421 MPLFVAARITPAMATLGFDPAQHLPARAPWLVANFLLKRFPKEKPEAPLSWDNVVQREPG 480 MPLFVAAR+ P +A GF+PA+ LP RAPWLV+NFLL P E+ PL+WDNVV G Sbjct: 349 MPLFVAARVFPQLAAYGFEPARDLPPRAPWLVSNFLLDGMPAEEAGVPLAWDNVVYDGAG 408 Query: 481 LGYVVSTHQDIRVHPPQQTVFTSYVALSHLTPDQARRWMDQATPAQLLALAMEDLQQAYG 540 LGYVVSTHQ IR+ PP ++VF++Y ALS TPD RRW+ QA P L A DLQ YG Sbjct: 409 LGYVVSTHQLIRMSPPTRSVFSAYQALSTQTPDDTRRWLAQAKPDALREQAALDLQAVYG 468 Query: 541 WQFGAAVERVDITLRAHAMAIPTPGFRSNAGLRKLQQADGKILFAHADLSGFSLFEEASW 600 + ++IT+R HAMA P GF S GL L+ ADG ++FAHADLSG SLFEEAS+ Sbjct: 469 RELWKHATALEITVRGHAMATPDVGFLSRPGLLALRDADGPVVFAHADLSGLSLFEEASY 528 Query: 601 WGYQAALKAL 610 WG AA + L Sbjct: 529 WGMLAAHRVL 538 >ref|YP_002234690.1| putative lipoprotein [Burkholderia cenocepacia J2315] emb|CAR55945.1| putative lipoprotein [Burkholderia cenocepacia J2315] Length = 540 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 284/551 (51%), Positives = 354/551 (64%), Gaps = 22/551 (3%) Query: 70 MQRRSFILGAAVAAGAATLGAGGVLQKWREVDPGIRTPGRAEGHFLRDLARHPGRLPVPS 129 M RR+F++ +A A+ AA G W E P + PG EGH LRD A LP PS Sbjct: 1 MDRRTFLVASAAASLAACGRTG-----WIETTPRVDYPGMREGHALRDHAA----LPAPS 51 Query: 130 EIIETDIAILGSGVAGLTAAWKLERSGHQDFLLIDGPEADGNAAGARYGQAGEYACPTGA 189 I+TD+AILG+G AGL+ AW+L R+GH F ++ GPE GNAAG R+G G P GA Sbjct: 52 GTIDTDVAILGAGAAGLSCAWQLARAGHTRFTVLAGPEFGGNAAGGRFGVLGY---PKGA 108 Query: 190 HYLPLPSQECLHVREILSDLSVILRDAQAERPYYDERYLLHAPDERLLVDGHWYEGLLPP 249 HYLPLPS E H+R++L+DL VI + RP YDER L+HAPDERL +DG W +G++P Sbjct: 109 HYLPLPSLESAHLRDMLADLGVIESAPFSARPVYDERALVHAPDERLFIDGQWQDGIVPA 168 Query: 250 --LQPGEQEELDRFNRSMDSLRASRDARGRRAFMLPSAQASDDPRWLALDRITMRQWLEQ 307 L + RF D LR +R A GR+ F +P A++S DPRW ALDR + RQWL Sbjct: 169 TGLDADALAQQARFFAYTDGLRTARGADGRKVFCIPIAESSRDPRWRALDRRSFRQWLHD 228 Query: 308 EGYRSPALHWLANYGCRDDYGARYDQVSAWAGLHYFCSRSGQAANAADGAWLTWPGGLQP 367 EGY + ALHW NY CRDDYGA Y+ VSAWAGLHYF SR G A +A+DGA LTWP GL Sbjct: 229 EGYTAKALHWYLNYCCRDDYGAGYEHVSAWAGLHYFSSRGGHAGDASDGAVLTWPDGLHT 288 Query: 368 LAEGLARRIGPR------RRPGTVLQLQETSRGIEALCM-VLRDGQATSFLLRARKAICA 420 + L+ I R R G ++ E + G++ LC V DG ++F L+AR+ +CA Sbjct: 289 MVTKLSESIAARTGSNTWSRDGFAVRATERAGGVDVLCARVGHDGTLSTFTLKARRVVCA 348 Query: 421 MPLFVAARITPAM-ATLGFDPAQHLPARAPWLVANFLLKRFPKEKPEAPLSWDNVVQREP 479 MPLFVAAR+ P + A GF+PA+ LP RAPWLV+NFLL P E+ PL+WDNVV Sbjct: 349 MPLFVAARVFPQLLAAYGFEPARDLPPRAPWLVSNFLLDGMPAEEAGVPLAWDNVVYDGA 408 Query: 480 GLGYVVSTHQDIRVHPPQQTVFTSYVALSHLTPDQARRWMDQATPAQLLALAMEDLQQAY 539 GLGYVVSTHQ IR+ PP ++VF++Y ALS TPD RRW+ QA P L A DLQ Y Sbjct: 409 GLGYVVSTHQLIRMSPPTRSVFSAYQALSTQTPDDTRRWLAQAKPDALREQAAIDLQAVY 468 Query: 540 GWQFGAAVERVDITLRAHAMAIPTPGFRSNAGLRKLQQADGKILFAHADLSGFSLFEEAS 599 G + ++IT+R HAMA P GF S GL L+ ADG ++FAHADLSG SLFEEAS Sbjct: 469 GRELWKHATALEITVRGHAMATPDVGFLSRPGLLALRDADGPVVFAHADLSGLSLFEEAS 528 Query: 600 WWGYQAALKAL 610 +WG AA + L Sbjct: 529 YWGMLAAHRVL 539