BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3649.p (503 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_297507.1| spermidine synthase [Ralstonia eutropha JMP134]... 696 0.0 ref|YP_585602.1| spermidine synthase [Cupriavidus metallidurans ... 694 0.0 ref|YP_003748603.1| spermidine synthase 2 (Putrescine aminopropy... 673 0.0 gb|AEG71333.1| spermidine synthase 2 (putrescineaminopropyltrans... 671 0.0 emb|CAQ37162.1| probable spermidine synthase 2 (putrescineaminop... 671 0.0 >ref|YP_297507.1| spermidine synthase [Ralstonia eutropha JMP134] gb|AAZ62663.1| Spermine synthase [Ralstonia eutropha JMP134] Length = 503 Score = 696 bits (1797), Expect = 0.0, Method: Composition-based stats. Identities = 343/503 (68%), Positives = 403/503 (80%) Query: 1 MINRILVLSIFVVASCGLAYELIAGALSSYLLGDSVLQFSTIIGCYLFAMGVGAHVSKYV 60 M +R LV+S+ +VASCGL YELIAGALSSYLLGDS+LQFS+IIGCYLFAMGVG+ +S+YV Sbjct: 1 MRDRTLVISVLIVASCGLGYELIAGALSSYLLGDSILQFSSIIGCYLFAMGVGSWLSRYV 60 Query: 61 KDEDVLARFVDIEIMVGLIGGLSAALLFLSFSWSAAPFRILLYSVVFLIGALVGMEVPLV 120 KDEDVLARF+DIEI+VGL+GG+SAALLF+ F+W +APFR LY++VFL G LVGME+PLV Sbjct: 61 KDEDVLARFIDIEILVGLLGGISAALLFVVFAWLSAPFRTALYALVFLTGVLVGMEIPLV 120 Query: 121 MRALNARQTAFRELVSTVLTFDYLGALAVSLLFPLVLAPHLGLTRTGFLFGMSNVAVGLW 180 MR LNAR+ AF +LVS VLTFDYLGALAVSL+FPLVLAP LGL+RTGFLFGM N AV L+ Sbjct: 121 MRILNARRAAFSDLVSRVLTFDYLGALAVSLVFPLVLAPRLGLSRTGFLFGMLNAAVALY 180 Query: 181 TIYVFRAELQQAQRQLLRACLVLFLLGTGFAASDRLVQWGEHGMYGDEVIYSTSTPYQRL 240 T +FR EL Q + +RA +V+ LLG GFA SDRL W E G++GDE+I+S STPYQRL Sbjct: 181 TTRLFRDELPQVPLRTMRALVVIALLGAGFAGSDRLTHWAERGLFGDEIIHSESTPYQRL 240 Query: 241 VITRWKDDLRLYINGNLQFSSRDEYRYHEALVHPALATLPWARSVLVLGGGDGLALREIL 300 VITRWKDDLRLYINGNLQFSSRDE+RYHEALVHP + LPWAR VLV+GGGDGLALREIL Sbjct: 241 VITRWKDDLRLYINGNLQFSSRDEHRYHEALVHPVMQALPWARRVLVIGGGDGLALREIL 300 Query: 301 RHPGIREVTLVDLDPAMTQAFRQRPELVALNKGALSDPRVKVINADAAVWLQNSTQTFDL 360 RH I VTLVDLDPAMT F Q L ALN+ +L D RV V NADAA W++ + + FD Sbjct: 301 RHRNIEHVTLVDLDPAMTTLFSQSAPLRALNRDSLRDARVTVFNADAAQWMEQNAEVFDA 360 Query: 361 AIVDFPDPSSFALGKLFSVPFYGVLKKHISANGLIVVQATSPYFAPHAYWSIDATLREAQ 420 IVD PDPS+F LGKL+SVP Y +L +H++ G VVQ+TSPY+AP ++W IDATL EA Sbjct: 361 IIVDLPDPSNFGLGKLYSVPMYRLLSRHLAEKGYAVVQSTSPYYAPRSFWGIDATLHEAG 420 Query: 421 WKTYPYHLYVPSFGEWGFILASPQRDYVPPTTYAQPMRYLNGATTAEMFRFPPDMPRVEV 480 T+PYH YVPSFGEWGFILA + DY PPT Y PM++L+ +TA MFRFPPDM Sbjct: 421 LHTWPYHAYVPSFGEWGFILAGKRSDYTPPTRYDMPMKFLDADSTALMFRFPPDMAPRAG 480 Query: 481 EPNRLNNQSLVRYFERDWHQVVR 503 NRLN QSLV FE+DW V+R Sbjct: 481 HANRLNEQSLVHDFEQDWGNVIR 503 >ref|YP_585602.1| spermidine synthase [Cupriavidus metallidurans CH34] gb|ABF10333.1| spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) [Cupriavidus metallidurans CH34] Length = 503 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 339/503 (67%), Positives = 407/503 (80%) Query: 1 MINRILVLSIFVVASCGLAYELIAGALSSYLLGDSVLQFSTIIGCYLFAMGVGAHVSKYV 60 M +R LVLS+ +VASCGL YELIAGALSSYLLGDS+LQFS+IIGCYLFAMGVG+ +S+YV Sbjct: 1 MRDRTLVLSVLIVASCGLGYELIAGALSSYLLGDSILQFSSIIGCYLFAMGVGSWLSRYV 60 Query: 61 KDEDVLARFVDIEIMVGLIGGLSAALLFLSFSWSAAPFRILLYSVVFLIGALVGMEVPLV 120 KDEDVL RF+DIEI+VGL+GG+SAALLF+ F+W +APFR LY++VF+IG LVGME+PLV Sbjct: 61 KDEDVLTRFIDIEILVGLLGGISAALLFVVFAWLSAPFRTALYALVFVIGMLVGMEIPLV 120 Query: 121 MRALNARQTAFRELVSTVLTFDYLGALAVSLLFPLVLAPHLGLTRTGFLFGMSNVAVGLW 180 MR LNAR+ F +LVS VLTFDYLGALAVSL+FPLVLAP LGL+RTGFLFGM NVAV L+ Sbjct: 121 MRILNARRAQFSDLVSRVLTFDYLGALAVSLVFPLVLAPRLGLSRTGFLFGMLNVAVALF 180 Query: 181 TIYVFRAELQQAQRQLLRACLVLFLLGTGFAASDRLVQWGEHGMYGDEVIYSTSTPYQRL 240 T+ +FR E+ + + LRA +VL +L GFA S+ L W E G++GDE+I+S +TPYQRL Sbjct: 181 TLRIFRDEVSRTTLRTLRAGMVLAVLTVGFAGSNYLTHWAERGLFGDEIIHSETTPYQRL 240 Query: 241 VITRWKDDLRLYINGNLQFSSRDEYRYHEALVHPALATLPWARSVLVLGGGDGLALREIL 300 VITRWKDDLRLYINGNLQFSSRDE+RYHEALVHP L LPWAR VLV+GGGDGLALREIL Sbjct: 241 VITRWKDDLRLYINGNLQFSSRDEHRYHEALVHPVLQALPWARRVLVIGGGDGLALREIL 300 Query: 301 RHPGIREVTLVDLDPAMTQAFRQRPELVALNKGALSDPRVKVINADAAVWLQNSTQTFDL 360 ++ I VTLVDLDPAMT F + L ALN G+L+D RV V+NADAA WL+ + +FD Sbjct: 301 KYRNIEHVTLVDLDPAMTTLFSRSEPLRALNHGSLTDQRVTVVNADAAQWLEQNQDSFDA 360 Query: 361 AIVDFPDPSSFALGKLFSVPFYGVLKKHISANGLIVVQATSPYFAPHAYWSIDATLREAQ 420 IVD PDPS+F LGKL+SVP Y ++ +H++ G VVQ+TSPY+AP ++W IDATLREA Sbjct: 361 IIVDLPDPSNFGLGKLYSVPMYRLMSRHLAEKGYAVVQSTSPYYAPRSFWDIDATLREAG 420 Query: 421 WKTYPYHLYVPSFGEWGFILASPQRDYVPPTTYAQPMRYLNGATTAEMFRFPPDMPRVEV 480 T+PYH YVPSFGEWG+IL + DY PPT Y PM++L+G TTA MFRFP DM + Sbjct: 421 LHTWPYHTYVPSFGEWGYILVGKRNDYTPPTRYDVPMKFLDGDTTALMFRFPADMAPRQG 480 Query: 481 EPNRLNNQSLVRYFERDWHQVVR 503 EPNRLN Q+LV FERDW V+R Sbjct: 481 EPNRLNEQTLVHDFERDWRNVIR 503 >ref|YP_003748603.1| spermidine synthase 2 (Putrescine aminopropyltransferase 2) (PAPT 2) (SPDSY 2) [Ralstonia solanacearum CFBP2957] emb|CBJ54223.1| spermidine synthase 2 (Putrescine aminopropyltransferase 2) (PAPT 2) (SPDSY 2) [Ralstonia solanacearum CFBP2957] Length = 527 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 341/506 (67%), Positives = 414/506 (81%), Gaps = 5/506 (0%) Query: 3 NRILVLSIFVVASCGLAYELIAGALSSYLLGDSVLQFSTIIGCYLFAMGVGAHVSKYVKD 62 N +LVL++FVVASCGLAYELIAGAL+SYLLGDS+LQFS+IIG YLFAMG+G+ VS+YV D Sbjct: 22 NALLVLAVFVVASCGLAYELIAGALASYLLGDSILQFSSIIGAYLFAMGIGSWVSRYVAD 81 Query: 63 EDVLARFVDIEIMVGLIGGLSAALLFLSFSWSAAPFRILLYSVVFLIGALVGMEVPLVMR 122 E +LARFVD+E++VGL GG+SAA LFL F+ +APFR++LY++V +IG LVGME+PLVMR Sbjct: 82 EALLARFVDLELLVGLFGGVSAAALFLLFALESAPFRLVLYALVTVIGVLVGMEIPLVMR 141 Query: 123 ALNARQTAFRELVSTVLTFDYLGALAVSLLFPLVLAPHLGLTRTGFLFGMSNVAVGLWTI 182 L+ RQ F +LVS VLTFDYLGALAVSLLFPLVLAP LGL RTGFLFG+ N A+ +WT+ Sbjct: 142 MLHRRQAKFSDLVSRVLTFDYLGALAVSLLFPLVLAPRLGLVRTGFLFGLCNTAIAVWTL 201 Query: 183 YVFRAELQQAQR----QLLRACLVLFLLGTGFAASDRLVQWGEHGMYGDEVIYSTSTPYQ 238 + FRAEL+ + R RA +V +L GFAASDRL W E ++GDE+I++ S+PYQ Sbjct: 202 WHFRAELELSARLRGAMAWRAGVVGAMLLAGFAASDRLTHWSERALFGDEIIHAISSPYQ 261 Query: 239 RLVITRWKDDLRLYINGNLQFSSRDEYRYHEALVHPALATLPWARSVLVLGGGDGLALRE 298 RLV+TRWKDDLRLYINGNLQFSSRDEYRYHEALV PAL ++ AR VLVLGGGDGLALR+ Sbjct: 262 RLVVTRWKDDLRLYINGNLQFSSRDEYRYHEALVLPALESVRGARRVLVLGGGDGLALRQ 321 Query: 299 ILRHPGIREVTLVDLDPAMTQAFRQRPELVALNKGALSDPRVKVINADAAVWLQNSTQTF 358 IL++P I VTLVDLDP MT F LVALN+ A SDPRV V+NADA WLQ + F Sbjct: 322 ILKYPQIEHVTLVDLDPRMTNLFSHAEALVALNQHAFSDPRVTVVNADAGQWLQTAADMF 381 Query: 359 DLAIVDFPDPSSFALGKLFSVPFYGVLKKHISANGLIVVQATSPYFAPHAYWSIDATLRE 418 D+AIVDFPDPS+F++GKL+SVPFY +L +H++ GL+V+QATSPYFAP +YW +DATL+E Sbjct: 382 DVAIVDFPDPSNFSIGKLYSVPFYRLLSRHVADTGLVVIQATSPYFAPRSYWCVDATLKE 441 Query: 419 AQWKTYPYHLYVPSFGEWGFILASPQR-DYVPPTTYAQPMRYLNGATTAEMFRFPPDMPR 477 A ++T+PYH VPSFGEWGFILA+P R D+ PPT+Y P R+L+ TT +MF F PDMPR Sbjct: 442 AGYRTWPYHALVPSFGEWGFILAAPGRADFRPPTSYRVPTRFLDADTTHQMFSFAPDMPR 501 Query: 478 VEVEPNRLNNQSLVRYFERDWHQVVR 503 +VEPNRLNNQSLVRYFE DWH V+R Sbjct: 502 PQVEPNRLNNQSLVRYFEEDWHGVLR 527 >gb|AEG71333.1| spermidine synthase 2 (putrescineaminopropyltransferase 2) (spdsy 2) protein [Ralstonia solanacearum Po82] Length = 527 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 341/506 (67%), Positives = 413/506 (81%), Gaps = 5/506 (0%) Query: 3 NRILVLSIFVVASCGLAYELIAGALSSYLLGDSVLQFSTIIGCYLFAMGVGAHVSKYVKD 62 N +LVL++FVVASCGLAYELIAGAL+SYLLGDS+LQFS+IIG YLFAMG+G+ VS+YV D Sbjct: 22 NALLVLAVFVVASCGLAYELIAGALASYLLGDSILQFSSIIGAYLFAMGIGSWVSRYVAD 81 Query: 63 EDVLARFVDIEIMVGLIGGLSAALLFLSFSWSAAPFRILLYSVVFLIGALVGMEVPLVMR 122 E +LARFVD+E++VGL GG+SAA LFL F+ +APFR++LY++V +IG LVGME+PLVMR Sbjct: 82 EALLARFVDLELLVGLFGGISAAALFLLFALESAPFRLVLYALVTVIGVLVGMEIPLVMR 141 Query: 123 ALNARQTAFRELVSTVLTFDYLGALAVSLLFPLVLAPHLGLTRTGFLFGMSNVAVGLWTI 182 L+ RQ F +LVS VLTFDYLGALAVSLLFPLVLAP LGL RTGFLFG+ N A+ +WT+ Sbjct: 142 MLHRRQAKFSDLVSRVLTFDYLGALAVSLLFPLVLAPRLGLVRTGFLFGLCNTAIAVWTL 201 Query: 183 YVFRAELQQAQR----QLLRACLVLFLLGTGFAASDRLVQWGEHGMYGDEVIYSTSTPYQ 238 + FRAEL + R RA +V +L GFAASDRL W E ++GDE+I++ S+PYQ Sbjct: 202 WHFRAELGLSARLRGAMAWRAGVVGAMLLAGFAASDRLTHWSERALFGDEIIHAISSPYQ 261 Query: 239 RLVITRWKDDLRLYINGNLQFSSRDEYRYHEALVHPALATLPWARSVLVLGGGDGLALRE 298 RLV+TRWKDDLRLYINGNLQFSSRDEYRYHEALV PAL ++ AR VLVLGGGDGLALR+ Sbjct: 262 RLVVTRWKDDLRLYINGNLQFSSRDEYRYHEALVLPALESVRGARRVLVLGGGDGLALRQ 321 Query: 299 ILRHPGIREVTLVDLDPAMTQAFRQRPELVALNKGALSDPRVKVINADAAVWLQNSTQTF 358 IL++P I VTLVDLDP MT F LVALN+ A SDPRV V+NADA WLQ + F Sbjct: 322 ILKYPQIEHVTLVDLDPRMTNLFSHAEALVALNQHAFSDPRVTVVNADAGQWLQTAADMF 381 Query: 359 DLAIVDFPDPSSFALGKLFSVPFYGVLKKHISANGLIVVQATSPYFAPHAYWSIDATLRE 418 D+AIVDFPDPS+F++GKL+SVPFY +L +H++ GL+V+QATSPYFAP +YW +DATL+E Sbjct: 382 DVAIVDFPDPSNFSIGKLYSVPFYRLLSRHVADTGLVVIQATSPYFAPRSYWCVDATLKE 441 Query: 419 AQWKTYPYHLYVPSFGEWGFILASPQR-DYVPPTTYAQPMRYLNGATTAEMFRFPPDMPR 477 A ++T+PYH VPSFGEWGFILA+P R D+ PPT+Y P R+L+ TT +MF F PDMPR Sbjct: 442 AGYRTWPYHALVPSFGEWGFILAAPGRADFRPPTSYRVPTRFLDADTTHQMFSFAPDMPR 501 Query: 478 VEVEPNRLNNQSLVRYFERDWHQVVR 503 +VEPNRLNNQSLVRYFE DWH V+R Sbjct: 502 PQVEPNRLNNQSLVRYFEEDWHGVLR 527 >emb|CAQ37162.1| probable spermidine synthase 2 (putrescineaminopropyltransferase 2) (spdsy 2) protein [Ralstonia solanacearum MolK2] Length = 527 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 341/506 (67%), Positives = 413/506 (81%), Gaps = 5/506 (0%) Query: 3 NRILVLSIFVVASCGLAYELIAGALSSYLLGDSVLQFSTIIGCYLFAMGVGAHVSKYVKD 62 N +LVL++FVVASCGLAYELIAGAL+SYLLGDS+LQFS+IIG YLFAMG+G+ VS+YV D Sbjct: 22 NALLVLAVFVVASCGLAYELIAGALASYLLGDSILQFSSIIGAYLFAMGIGSWVSRYVAD 81 Query: 63 EDVLARFVDIEIMVGLIGGLSAALLFLSFSWSAAPFRILLYSVVFLIGALVGMEVPLVMR 122 E +LARFVD+E++VGL GG+SAA LFL F+ +APFR++LY++V +IG LVGME+PLVMR Sbjct: 82 EALLARFVDLELLVGLFGGVSAAALFLLFALESAPFRLVLYALVTVIGVLVGMEIPLVMR 141 Query: 123 ALNARQTAFRELVSTVLTFDYLGALAVSLLFPLVLAPHLGLTRTGFLFGMSNVAVGLWTI 182 L+ RQ F +LVS VLTFDYLGALAVSLLFPLVLAP LGL RTGFLFG+ N A+ +WT+ Sbjct: 142 MLHRRQAKFSDLVSRVLTFDYLGALAVSLLFPLVLAPRLGLVRTGFLFGLCNTAIAVWTL 201 Query: 183 YVFRAELQQAQR----QLLRACLVLFLLGTGFAASDRLVQWGEHGMYGDEVIYSTSTPYQ 238 + FRAEL + R RA +V +L GFAASDRL W E ++GDE+I++ S+PYQ Sbjct: 202 WHFRAELGLSARLRGAMAWRAGVVGAMLLAGFAASDRLTHWSERALFGDEIIHAISSPYQ 261 Query: 239 RLVITRWKDDLRLYINGNLQFSSRDEYRYHEALVHPALATLPWARSVLVLGGGDGLALRE 298 RLV+TRWKDDLRLYINGNLQFSSRDEYRYHEALV PAL ++ AR VLVLGGGDGLALR+ Sbjct: 262 RLVVTRWKDDLRLYINGNLQFSSRDEYRYHEALVLPALESVRGARRVLVLGGGDGLALRQ 321 Query: 299 ILRHPGIREVTLVDLDPAMTQAFRQRPELVALNKGALSDPRVKVINADAAVWLQNSTQTF 358 IL++P I VTLVDLDP MT F LVALN+ A SDPRV V+NADA WLQ + F Sbjct: 322 ILKYPQIEHVTLVDLDPRMTNLFSHAEALVALNQHAFSDPRVTVVNADAGQWLQTAADMF 381 Query: 359 DLAIVDFPDPSSFALGKLFSVPFYGVLKKHISANGLIVVQATSPYFAPHAYWSIDATLRE 418 D+AIVDFPDPS+F++GKL+SVPFY +L +H++ GL+V+QATSPYFAP +YW +DATL+E Sbjct: 382 DVAIVDFPDPSNFSIGKLYSVPFYRLLSRHVADTGLVVIQATSPYFAPRSYWCVDATLKE 441 Query: 419 AQWKTYPYHLYVPSFGEWGFILASPQR-DYVPPTTYAQPMRYLNGATTAEMFRFPPDMPR 477 A ++T+PYH VPSFGEWGFILA+P R D+ PPT+Y P R+L+ TT +MF F PDMPR Sbjct: 442 AGYRTWPYHALVPSFGEWGFILAAPGRADFRPPTSYRVPTRFLDADTTHQMFSFAPDMPR 501 Query: 478 VEVEPNRLNNQSLVRYFERDWHQVVR 503 +VEPNRLNNQSLVRYFE DWH V+R Sbjct: 502 PQVEPNRLNNQSLVRYFEEDWHGVLR 527