BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3648.p         (83 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08503163.1| hypothetical protein METUNv1_00153 [Methylove...    84   1e-14
ref|YP_297506.1| hypothetical protein Reut_A3303 [Ralstonia eutr...    79   2e-13
ref|YP_724560.1| hypothetical protein H16_A0040 [Ralstonia eutro...    73   1e-11
ref|YP_001795401.1| hypothetical protein RALTA_A0006 [Cupriavidu...    72   2e-11
ref|YP_623341.1| hypothetical protein Bcen_3474 [Burkholderia ce...    72   2e-11

>ref|ZP_08503163.1| hypothetical protein METUNv1_00153 [Methyloversatilis universalis
           FAM5]
 gb|EGK73525.1| hypothetical protein METUNv1_00153 [Methyloversatilis universalis
           FAM5]
          Length = 133

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 57/83 (68%)

Query: 1   MSLGGAMGGFSLTIASSILHTNDYQQFFAWAAGALVVQLLAYLVTTRGLRISREHIETDN 60
           +SL GA+ GFSLT+ASSILH + Y  F  W   A VVQ+ AYL+  R L   +  IE +N
Sbjct: 51  LSLAGAIAGFSLTVASSILHNDHYLMFIVWGTLAAVVQMAAYLLIERSLPEMKVAIEANN 110

Query: 61  VAFGGLMGTISLCIGAINAACIS 83
           +A G LMGT+SL +G INAAC+S
Sbjct: 111 IAMGALMGTVSLVVGVINAACLS 133


>ref|YP_297506.1| hypothetical protein Reut_A3303 [Ralstonia eutropha JMP134]
 gb|AAZ62662.1| Protein of unknown function DUF350 [Ralstonia eutropha JMP134]
          Length = 153

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 57/83 (68%)

Query: 1   MSLGGAMGGFSLTIASSILHTNDYQQFFAWAAGALVVQLLAYLVTTRGLRISREHIETDN 60
           +SLGGA+ GF  T++SSI H + +  F +WA GA++VQ L Y   TR L      IE++N
Sbjct: 71  LSLGGALLGFCFTLSSSIQHNDTFPTFLSWAVGAMIVQALVYAGLTRALPDMDAAIESNN 130

Query: 61  VAFGGLMGTISLCIGAINAACIS 83
           +  G LMGTIS+ +GAINAAC+S
Sbjct: 131 IGMGALMGTISVTVGAINAACLS 153


>ref|YP_724560.1| hypothetical protein H16_A0040 [Ralstonia eutropha H16]
 emb|CAJ91192.1| predicted membrane protein [Ralstonia eutropha H16]
          Length = 132

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 55/83 (66%)

Query: 1   MSLGGAMGGFSLTIASSILHTNDYQQFFAWAAGALVVQLLAYLVTTRGLRISREHIETDN 60
           +SLGGA+ GFSLT++SSI H   +  F  WA GA  VQ+LAYLV  R L    E I +DN
Sbjct: 50  LSLGGAVLGFSLTLSSSIQHNATFGMFLLWAFGAFAVQVLAYLVVARALGGVGEAISSDN 109

Query: 61  VAFGGLMGTISLCIGAINAACIS 83
              G +MG ISL +G +NAAC++
Sbjct: 110 RGVGAVMGVISLAVGVVNAACLT 132


>ref|YP_001795401.1| hypothetical protein RALTA_A0006 [Cupriavidus taiwanensis LMG
           19424]
 emb|CAP62679.1| conserved hypothetical protein, DUF350; putative transmembrane
           protein [Cupriavidus taiwanensis LMG 19424]
          Length = 128

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/83 (50%), Positives = 55/83 (66%)

Query: 1   MSLGGAMGGFSLTIASSILHTNDYQQFFAWAAGALVVQLLAYLVTTRGLRISREHIETDN 60
           +SLGGA+ GFSLT++SSI H   +  F  WA GA  VQ++AYLV  R L    E I +DN
Sbjct: 46  LSLGGAVLGFSLTLSSSIQHNATFAMFLLWAFGAFAVQVVAYLVAARALGGVSEAISSDN 105

Query: 61  VAFGGLMGTISLCIGAINAACIS 83
              G +MG ISL +G +NAAC++
Sbjct: 106 RGMGAVMGVISLSVGVVNAACLT 128


>ref|YP_623341.1| hypothetical protein Bcen_3474 [Burkholderia cenocepacia AU 1054]
 ref|YP_838519.1| hypothetical protein Bcen2424_4892 [Burkholderia cenocepacia
           HI2424]
 ref|YP_001779011.1| hypothetical protein Bcenmc03_5394 [Burkholderia cenocepacia MC0-3]
 ref|ZP_04943481.1| hypothetical protein BCPG_05045 [Burkholderia cenocepacia PC184]
 gb|ABF78368.1| protein of unknown function DUF350 [Burkholderia cenocepacia AU
           1054]
 gb|ABK11626.1| protein of unknown function DUF350 [Burkholderia cenocepacia
           HI2424]
 gb|EAY66652.1| hypothetical protein BCPG_05045 [Burkholderia cenocepacia PC184]
 gb|ACA94521.1| protein of unknown function DUF350 [Burkholderia cenocepacia MC0-3]
          Length = 128

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/83 (51%), Positives = 55/83 (66%)

Query: 1   MSLGGAMGGFSLTIASSILHTNDYQQFFAWAAGALVVQLLAYLVTTRGLRISREHIETDN 60
           +S GGA+ GF LT+ASSI H +   +   WA GA++VQL+ Y V TR +      IE  N
Sbjct: 46  LSFGGALIGFCLTLASSIAHNSTLGEVVIWAVGAMIVQLITYAVLTRVMPGMNHAIEDRN 105

Query: 61  VAFGGLMGTISLCIGAINAACIS 83
           VA GGLMGT SL +G INAAC++
Sbjct: 106 VAMGGLMGTASLVVGIINAACLT 128