BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3646.p (479 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AEG71341.1| conserved hypothetical protein [Ralstonia solanac... 401 e-109 emb|CCA86904.1| putative transmembrane protein [Ralstonia syzygi... 399 e-109 ref|NP_522854.1| hypothetical protein RS05340 [Ralstonia solanac... 399 e-109 emb|CAQ37154.1| conserved hypothetical protein [Ralstonia solana... 395 e-107 ref|YP_002257991.1| hypothetical protein RSIPO_04298 [Ralstonia ... 394 e-107 >gb|AEG71341.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 482 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 211/454 (46%), Positives = 282/454 (62%), Gaps = 5/454 (1%) Query: 1 MQTASCPNCGAPTEFKSLASVMAVCSYCRTTVYKDGSAAHTLGQVSEVLDDYSPIQIGTS 60 M A+CP CGAP E KS A+VMAVC +C++T+ +DG +G++S VL+DY+ +QIGTS Sbjct: 1 MFHANCPACGAPVELKSAAAVMAVCGFCKSTLLRDGETLKDIGKMSAVLEDYARVQIGTS 60 Query: 61 GFIEGQAFTVVGRIQLQYDGGLWNEWALQVGDGQQEWWLSDASGLYTVTRRTAATQTWPR 120 G G+AFTVVGRIQL+YD G WNEW DG + WL++ASG T+T + Sbjct: 61 GRYMGRAFTVVGRIQLRYDAGFWNEWYALFDDGS-DGWLAEASGQVTMTVASGRPADAVP 119 Query: 121 FDELKPLTRVEIGGIPHVVGDVRTARCTGGQGELPLGLRDGWQARVADLHVADRFVTLDF 180 F L+P G P V+ DVR A CTGG+GELP + GW+ARVAD D F+TLD+ Sbjct: 120 FGSLRPGQSYNADGKPFVLSDVREADCTGGEGELPFRVGQGWRARVADGRCKDAFLTLDY 179 Query: 181 SDEEVPVLYQGKSVTLESLKCEFLRDDDTVRAGSYRYQGKLGSMTCPSCGTAIRFLPRQT 240 SD PVLY G + +L++L C+ LR D +R + GKL ++ CPSCGT++ F P T Sbjct: 180 SDGTAPVLYLGVATSLKALNCQLLRSDQEIRDRAGALPGKLVNLDCPSCGTSVPFSPGVT 239 Query: 241 EHLVCQSCHSQIALTGVKAEVVAAQEKIAAAALTLELGTEATIAGARFEVIGAMRRT--D 298 HL+C +C + I + +AE+V + TL+LG +ATI GA++++IG MRRT + Sbjct: 240 THLLCPACGTAIDTSAARAEIVEQARSVPQVVTTLDLGAKATIDGAQWQIIGVMRRTVVN 299 Query: 299 DDEQWTEYLLHNERRGFLWLVEADEGWSTASVLQAWPDMSGADGVTQGRLRLPMQYEAEA 358 D +W EYLL+N RGFLWL E DEGWS A VL+ WP+ A G R + A Sbjct: 300 GDGEWFEYLLYNANRGFLWLAETDEGWSRAKVLERWPETVDASGAVLDGKRFARSDDYSA 359 Query: 359 RVTYAVGAFNWKVSVGDVARVVQYGKGSKSLTLEVTGEEATWSEAKPVSPDQLRAWLGKE 418 RV+YA GAFNW+V GDV R+V+YG + L E E WS + PVS +++AW GK Sbjct: 360 RVSYAAGAFNWRVKSGDVTRMVEYGASANGLAAESDAHELNWSRSTPVSAAEIQAWFGKV 419 Query: 419 VASETARAASGMSFMTLAHVMAVLFVILNCIPIL 452 VA E A+ A G S+MT+A V VL +L+ P Sbjct: 420 VA-EPAKPADG-SYMTVAVVACVLLGLLSLAPFF 451 >emb|CCA86904.1| putative transmembrane protein [Ralstonia syzygii R24] Length = 497 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 210/454 (46%), Positives = 283/454 (62%), Gaps = 5/454 (1%) Query: 1 MQTASCPNCGAPTEFKSLASVMAVCSYCRTTVYKDGSAAHTLGQVSEVLDDYSPIQIGTS 60 M A+CP CGAP E KS A+VMAVCS+C++T+ +DG +G++S VL+DY+ +QIGT+ Sbjct: 16 MFHANCPACGAPVELKSAAAVMAVCSFCKSTLLRDGETLKDIGKMSAVLEDYARVQIGTA 75 Query: 61 GFIEGQAFTVVGRIQLQYDGGLWNEWALQVGDGQQEWWLSDASGLYTVTRRTAATQTWPR 120 G +G+AFTVVGRIQL+YD G WNEW + DG + WL++ASG T+T + Sbjct: 76 GRYQGRAFTVVGRIQLRYDAGFWNEWYVLFDDGS-DGWLAEASGQVTMTVASGRPADAVP 134 Query: 121 FDELKPLTRVEIGGIPHVVGDVRTARCTGGQGELPLGLRDGWQARVADLHVADRFVTLDF 180 F+ L+P G V+ DVR A CTGG+GELP + GW ARVAD D F+TLD+ Sbjct: 135 FESLRPGQSYNADGKQFVLSDVREADCTGGEGELPFRVGQGWHARVADGRCKDAFLTLDY 194 Query: 181 SDEEVPVLYQGKSVTLESLKCEFLRDDDTVRAGSYRYQGKLGSMTCPSCGTAIRFLPRQT 240 SD PVLY G + +L++L C+ LR D +R + GKL ++ CPSCGT++ F P T Sbjct: 195 SDGTAPVLYLGVATSLKALNCQLLRSDQAIRDSAGTLPGKLVNLDCPSCGTSVPFSPGVT 254 Query: 241 EHLVCQSCHSQIALTGVKAEVVAAQEKIAAAALTLELGTEATIAGARFEVIGAMRRT--D 298 HL+C SC S + + +AE+V + TL+LG +A I G ++++IG MRRT + Sbjct: 255 THLLCPSCGSAVDTSTARAELVERARSVPQVVTTLDLGAKAVIDGVQWQIIGVMRRTVVN 314 Query: 299 DDEQWTEYLLHNERRGFLWLVEADEGWSTASVLQAWPDMSGADGVTQGRLRLPMQYEAEA 358 D +W EYLL++ RGFLWLVE DEGWS A VL+ WP+ A G R + A Sbjct: 315 GDGEWFEYLLYSASRGFLWLVETDEGWSRARVLERWPEAVDAGGAVLDGKRYARTDDYSA 374 Query: 359 RVTYAVGAFNWKVSVGDVARVVQYGKGSKSLTLEVTGEEATWSEAKPVSPDQLRAWLGKE 418 RV+YA GAFNW+V GDV RVV+YG + L E E WS + PVS +++AW GK Sbjct: 375 RVSYAAGAFNWRVKSGDVTRVVEYGAIANGLASESDTHELNWSRSTPVSAAEIQAWFGKT 434 Query: 419 VASETARAASGMSFMTLAHVMAVLFVILNCIPIL 452 VA E + A G S+MT+A V VL +LN +P Sbjct: 435 VA-EPVKPADG-SYMTVAVVACVLLGLLNLVPFF 466 >ref|NP_522854.1| hypothetical protein RS05340 [Ralstonia solanacearum GMI1000] emb|CAD18446.1| probable transmembrane protein [Ralstonia solanacearum GMI1000] Length = 482 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 208/454 (45%), Positives = 285/454 (62%), Gaps = 5/454 (1%) Query: 1 MQTASCPNCGAPTEFKSLASVMAVCSYCRTTVYKDGSAAHTLGQVSEVLDDYSPIQIGTS 60 M A+CP CGAP E KS A+VMAVCS+C++T+ +DG +G++S VL+DY+ +QIGT+ Sbjct: 1 MFHANCPACGAPVELKSAAAVMAVCSFCKSTLLRDGETLKDIGKMSAVLEDYARVQIGTT 60 Query: 61 GFIEGQAFTVVGRIQLQYDGGLWNEWALQVGDGQQEWWLSDASGLYTVTRRTAATQTWPR 120 G +G+AFTV+GRIQL+YD G WNEW DG + WL++ASG T+T + Sbjct: 61 GRYQGRAFTVIGRIQLRYDAGFWNEWYALFDDGS-DGWLAEASGQVTMTLASGRPADAVP 119 Query: 121 FDELKPLTRVEIGGIPHVVGDVRTARCTGGQGELPLGLRDGWQARVADLHVADRFVTLDF 180 F+ L+P + G V+ DVR A CTGG+GELP + GW+ARVAD D F+TLD+ Sbjct: 120 FESLRPGQSYDADGKRFVLSDVREADCTGGEGELPFRVGQGWRARVADGRSKDAFLTLDY 179 Query: 181 SDEEVPVLYQGKSVTLESLKCEFLRDDDTVRAGSYRYQGKLGSMTCPSCGTAIRFLPRQT 240 SD PVLY G + +L++L C+ LR D +R + GKL ++ CP+CGT++ F P T Sbjct: 180 SDGTAPVLYLGVATSLKALNCQLLRSDQDIRDSAGALPGKLVNLDCPACGTSVPFSPGVT 239 Query: 241 EHLVCQSCHSQIALTGVKAEVVAAQEKIAAAALTLELGTEATIAGARFEVIGAMRRT--D 298 HL+C SC S + + +AE+V + TL+LG +A I GA++++IG MRRT + Sbjct: 240 THLLCPSCGSAVDTSAARAELVERARSVPEVVTTLDLGAKAVIDGAQWQIIGVMRRTVVN 299 Query: 299 DDEQWTEYLLHNERRGFLWLVEADEGWSTASVLQAWPDMSGADGVTQGRLRLPMQYEAEA 358 D +W EYLL++ RGFLWLVE DEGWS A VL+ WP+ A G R + A Sbjct: 300 GDGEWFEYLLYSASRGFLWLVETDEGWSRARVLERWPETVDAGGAVLDGKRYARSDDYSA 359 Query: 359 RVTYAVGAFNWKVSVGDVARVVQYGKGSKSLTLEVTGEEATWSEAKPVSPDQLRAWLGKE 418 RV+YA GAFNW+V GDV RV++YG + L E E WS + PVS +++AW GK Sbjct: 360 RVSYAAGAFNWRVKSGDVTRVIEYGAAANGLAAESDAHELNWSRSTPVSSAEIQAWFGKT 419 Query: 419 VASETARAASGMSFMTLAHVMAVLFVILNCIPIL 452 VA E + A G S+MT+A V VL +LN +P Sbjct: 420 VA-EPVKPADG-SYMTVAVVACVLLGLLNLVPFF 451 >emb|CAQ37154.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 482 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 209/443 (47%), Positives = 276/443 (62%), Gaps = 5/443 (1%) Query: 1 MQTASCPNCGAPTEFKSLASVMAVCSYCRTTVYKDGSAAHTLGQVSEVLDDYSPIQIGTS 60 M A+CP CGAP E KS A+VMAVC +C++T+ +DG +G++S VL+DY+ +QIGTS Sbjct: 1 MFHANCPACGAPVELKSAAAVMAVCGFCKSTLLRDGETLKDIGKMSAVLEDYARVQIGTS 60 Query: 61 GFIEGQAFTVVGRIQLQYDGGLWNEWALQVGDGQQEWWLSDASGLYTVTRRTAATQTWPR 120 G G+AFTVVGRIQL+YD G WNEW DG + WL++ASG T+T + Sbjct: 61 GRYMGRAFTVVGRIQLRYDAGFWNEWYALFDDGS-DGWLAEASGQVTMTVASGRPADAVP 119 Query: 121 FDELKPLTRVEIGGIPHVVGDVRTARCTGGQGELPLGLRDGWQARVADLHVADRFVTLDF 180 F L+P G P V+ DVR A CTGG+GELP + GW+ARVAD D F+TLD+ Sbjct: 120 FGSLRPGQSYTADGKPFVLSDVREADCTGGEGELPFRVGQGWRARVADGRCKDAFLTLDY 179 Query: 181 SDEEVPVLYQGKSVTLESLKCEFLRDDDTVRAGSYRYQGKLGSMTCPSCGTAIRFLPRQT 240 SD PVLY G + +L++L C+ LR D +R + GKL ++ CPSCGT++ F P T Sbjct: 180 SDGTAPVLYLGVATSLKALNCQLLRSDQEIRDRAGALPGKLVNLDCPSCGTSVPFSPGVT 239 Query: 241 EHLVCQSCHSQIALTGVKAEVVAAQEKIAAAALTLELGTEATIAGARFEVIGAMRRT--D 298 HL+C SC + I + +AE+V + TL+LG +ATI GA++++IG MRRT + Sbjct: 240 THLLCPSCGTAIDTSAARAEIVEQARSVPQVVTTLDLGAKATIDGAQWQIIGVMRRTVVN 299 Query: 299 DDEQWTEYLLHNERRGFLWLVEADEGWSTASVLQAWPDMSGADGVTQGRLRLPMQYEAEA 358 D +W EYLL+N RGFLWL E DEGWS A VL+ WP+ A G R + A Sbjct: 300 GDGEWFEYLLYNANRGFLWLAETDEGWSRAKVLERWPEAVDASGAVLDGKRFARSDDYSA 359 Query: 359 RVTYAVGAFNWKVSVGDVARVVQYGKGSKSLTLEVTGEEATWSEAKPVSPDQLRAWLGKE 418 RV+YA GAFNW+V GDV RVV+YG + L E E WS + PVS +++AW GK Sbjct: 360 RVSYAAGAFNWRVKSGDVTRVVEYGASANGLAAESDAHELNWSRSMPVSAAEIQAWFGKV 419 Query: 419 VASETARAASGMSFMTLAHVMAV 441 VA E + A G S+MT+A V V Sbjct: 420 VA-EPPKPADG-SYMTVAVVACV 440 >ref|YP_002257991.1| hypothetical protein RSIPO_04298 [Ralstonia solanacearum IPO1609] emb|CAQ59884.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 484 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 208/443 (46%), Positives = 276/443 (62%), Gaps = 5/443 (1%) Query: 1 MQTASCPNCGAPTEFKSLASVMAVCSYCRTTVYKDGSAAHTLGQVSEVLDDYSPIQIGTS 60 M A+CP CGAP E KS +VMAVC +C++T+ +DG +G++S VL+DY+ +QIGTS Sbjct: 3 MFHANCPACGAPVELKSATAVMAVCGFCKSTLLRDGETLKDIGKMSAVLEDYARVQIGTS 62 Query: 61 GFIEGQAFTVVGRIQLQYDGGLWNEWALQVGDGQQEWWLSDASGLYTVTRRTAATQTWPR 120 G +G+AFTVVGRIQL+YD G WNEW DG + WL++ASG T+T + Sbjct: 63 GRYQGRAFTVVGRIQLRYDAGFWNEWYALFDDGS-DGWLAEASGQVTMTVASGRPADAVP 121 Query: 121 FDELKPLTRVEIGGIPHVVGDVRTARCTGGQGELPLGLRDGWQARVADLHVADRFVTLDF 180 F L+P G V+ DVR A CTGG+GELP + GW+ARVAD D F+TLD+ Sbjct: 122 FGSLRPGLPYNADGKQFVLSDVREADCTGGEGELPFRVGQGWRARVADGRCKDAFLTLDY 181 Query: 181 SDEEVPVLYQGKSVTLESLKCEFLRDDDTVRAGSYRYQGKLGSMTCPSCGTAIRFLPRQT 240 SD PVLY G + +L++L C+ LR D +R + GKL ++ CPSCGT++ F P T Sbjct: 182 SDGTAPVLYLGVATSLKALNCQLLRSDQEIRDRAGALPGKLVNLDCPSCGTSVPFSPGVT 241 Query: 241 EHLVCQSCHSQIALTGVKAEVVAAQEKIAAAALTLELGTEATIAGARFEVIGAMRRT--D 298 HL+C SC + I + +AE+V + TL+LG +ATI GA++++IG MRRT + Sbjct: 242 THLLCPSCGTAIDTSAARAEIVEQARSVPQVVTTLDLGAKATIDGAQWQIIGVMRRTVVN 301 Query: 299 DDEQWTEYLLHNERRGFLWLVEADEGWSTASVLQAWPDMSGADGVTQGRLRLPMQYEAEA 358 D +W EYLL+N RGFLWL E DEGWS A VL+ WP+ A GV R + A Sbjct: 302 GDGEWFEYLLYNANRGFLWLAETDEGWSRAKVLERWPEAVDASGVVLDGKRFARSDDYSA 361 Query: 359 RVTYAVGAFNWKVSVGDVARVVQYGKGSKSLTLEVTGEEATWSEAKPVSPDQLRAWLGKE 418 RV+YA GAFNW+V GDV RVV+YG + L E E WS + PVS +++AW GK Sbjct: 362 RVSYAAGAFNWRVKSGDVTRVVEYGASANGLAAESDAHELNWSRSTPVSAAEIQAWFGKV 421 Query: 419 VASETARAASGMSFMTLAHVMAV 441 VA E + A G S+MT+A V V Sbjct: 422 VA-EPPKPADG-SYMTVAVVACV 442