BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3642.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776426.1| transcription regulator protein [Herbaspiril... 568 e-160 ref|YP_004753069.1| LysR family transcriptional regulator [Colli... 493 e-137 gb|AAZ39216.1| putative bacterial transcriptional regulator [Jan... 467 e-130 ref|ZP_08273444.1| Transcriptional regulator, LysR family [Oxalo... 461 e-128 ref|YP_003605379.1| transcriptional regulator, LysR family [Burk... 395 e-108 >ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64518.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 294/300 (98%), Positives = 299/300 (99%) Query: 25 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 84 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN Sbjct: 1 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 60 Query: 85 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLVPSFLAEHRD 144 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPL+PSFLAEHRD Sbjct: 61 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLLPSFLAEHRD 120 Query: 145 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPSYLRRHGTPGS 204 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAP+YLRRHGTP S Sbjct: 121 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQS 180 Query: 205 PDELVRHNCLAMSSEGSQRGWTLKQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRS 264 PDEL+RHNCLAMSSEGSQRGWTL+QSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRS Sbjct: 181 PDELMRHNCLAMSSEGSQRGWTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRS 240 Query: 265 MWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYWKQ 324 MWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYWK+ Sbjct: 241 MWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYWKK 300 >ref|YP_004753069.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62246.1| Transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 301 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 241/300 (80%), Positives = 273/300 (91%) Query: 25 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 84 MDQFKQISTF EVAA+GSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKI LTN Sbjct: 1 MDQFKQISTFVEVAAKGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIALTN 60 Query: 85 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLVPSFLAEHRD 144 EG AFLEDCQRIL+DLE+AESAVSERSA ASG LLISAPAGFGRQHVAPL+PSFL EHRD Sbjct: 61 EGEAFLEDCQRILSDLENAESAVSERSAHASGHLLISAPAGFGRQHVAPLMPSFLTEHRD 120 Query: 145 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPSYLRRHGTPGS 204 VTLTLNLNDR+ D+IGEGIDVAIRIA+L+DS+LV KLA+N R++VA+P+Y++RHG P + Sbjct: 121 VTLTLNLNDRVVDLIGEGIDVAIRIASLSDSSLVGAKLADNKRIVVASPAYIKRHGKPRT 180 Query: 205 PDELVRHNCLAMSSEGSQRGWTLKQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRS 264 D+L +HNCLA+SSEGSQRGW+ +Q GK+ +V GNMVCNDG+VLH+WALAG+GLAWRS Sbjct: 181 VDDLQKHNCLAISSEGSQRGWSFRQHGKIVTVRVAGNMVCNDGQVLHDWALAGKGLAWRS 240 Query: 265 MWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYWKQ 324 MWEVG+ IE+G+LVTVLD+FAAP IYAVFAQRRHLPLRIR FVDFLR AYAQPDYW+ Sbjct: 241 MWEVGSEIESGKLVTVLDEFAAPGNDIYAVFAQRRHLPLRIRVFVDFLRRAYAQPDYWRH 300 >gb|AAZ39216.1| putative bacterial transcriptional regulator [Janthinobacterium lividum] Length = 303 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 237/301 (78%), Positives = 275/301 (91%) Query: 25 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 84 M QF+QISTF EV A+GSLSAAARAEGIAPAMIGRRLDALE+RLGVKLLQRTTRK+ LTN Sbjct: 1 MGQFRQISTFVEVVAKGSLSAAARAEGIAPAMIGRRLDALEQRLGVKLLQRTTRKLALTN 60 Query: 85 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLVPSFLAEHRD 144 EGAAFLEDCQRIL +LE+AE+AV+ERS +ASG LLISAPAGFGRQHVAPL+PSF+AEHRD Sbjct: 61 EGAAFLEDCQRILGELEEAEAAVAERSVKASGHLLISAPAGFGRQHVAPLIPSFVAEHRD 120 Query: 145 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPSYLRRHGTPGS 204 VT++LNLNDR+ D+IGEGIDVAIRIA+L+DS+LVS KLA+N RV+V +P+YL+R GTP Sbjct: 121 VTVSLNLNDRLVDLIGEGIDVAIRIASLSDSSLVSTKLADNQRVLVGSPAYLKRAGTPRI 180 Query: 205 PDELVRHNCLAMSSEGSQRGWTLKQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRS 264 P +L +HNCLA+SSEGSQRGWT +++GK + KV GNMVCNDGEVLH+WALAG+GLAWRS Sbjct: 181 PADLAKHNCLAISSEGSQRGWTFRENGKNVILKVAGNMVCNDGEVLHDWALAGKGLAWRS 240 Query: 265 MWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYWKQ 324 MWEVGA I +G+LVTVLD+FAAP IYAVFAQRRHLPLRIRAFVDFLRH+YAQPDYW++ Sbjct: 241 MWEVGAEIASGQLVTVLDQFAAPGNDIYAVFAQRRHLPLRIRAFVDFLRHSYAQPDYWRE 300 Query: 325 R 325 R Sbjct: 301 R 301 >ref|ZP_08273444.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] gb|EGF33107.1| Transcriptional regulator, LysR family [Oxalobacteraceae bacterium IMCC9480] Length = 305 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 230/299 (76%), Positives = 261/299 (87%) Query: 25 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 84 MDQFKQ+STF E+ A+GS SAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKI LT Sbjct: 1 MDQFKQLSTFVEIIAKGSFSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIALTA 60 Query: 85 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLVPSFLAEHRD 144 EG++FLEDCQRILA+LE AE AVS + ASG L ISAPAGFGRQHVAPL+PSFLAEHR+ Sbjct: 61 EGSSFLEDCQRILAELEQAELAVSAGARAASGHLTISAPAGFGRQHVAPLLPSFLAEHRE 120 Query: 145 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPSYLRRHGTPGS 204 V+LTL+LNDRIAD++GEGIDVAIRIA LTDS++V VKLAEN RV+VA P+YL+RHGTP + Sbjct: 121 VSLTLSLNDRIADLLGEGIDVAIRIAALTDSSMVGVKLAENKRVVVATPAYLKRHGTPQA 180 Query: 205 PDELVRHNCLAMSSEGSQRGWTLKQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRS 264 D+L HNCLA+SS+GSQRGWT +Q GK KV GNM CNDG+VLH+WALAG+GL+WRS Sbjct: 181 LDQLTGHNCLAISSDGSQRGWTFRQHGKNVTIKVAGNMACNDGQVLHDWALAGKGLSWRS 240 Query: 265 MWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYWK 323 MWEV IEAG LVTVLD+FAAP IYAVFAQRRHLPLRIR F+DFLRHAY +PDYW+ Sbjct: 241 MWEVAGEIEAGRLVTVLDEFAAPGNDIYAVFAQRRHLPLRIRVFIDFLRHAYLRPDYWR 299 >ref|YP_003605379.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] gb|ADG15868.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 300 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 198/299 (66%), Positives = 237/299 (79%), Gaps = 1/299 (0%) Query: 25 MDQFKQISTFAEVAARGSLSAAARAEGIAPAMIGRRLDALEERLGVKLLQRTTRKIVLTN 84 MD+FKQI TFA VAA+GSLSAAA AEG+APA+IGRR+DALEERLGVKLL RTTRKI LT Sbjct: 1 MDRFKQIETFATVAAKGSLSAAALAEGVAPAIIGRRIDALEERLGVKLLVRTTRKITLTF 60 Query: 85 EGAAFLEDCQRILADLEDAESAVSERSARASGQLLISAPAGFGRQHVAPLVPSFLAEHRD 144 EG+AFLEDCQRIL D+++AE++VS +ASG L +SAPAGFGR+HVAPLVP+F H D Sbjct: 61 EGSAFLEDCQRILHDMQNAEASVSAGGVKASGHLRLSAPAGFGRRHVAPLVPAFTVAHPD 120 Query: 145 VTLTLNLNDRIADVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPSYLRRHGTPGS 204 V++TL+L+DR+ D++ EG D A+R+ L DS+LVS+KLAEN RV VA+P+YL R G P S Sbjct: 121 VSITLDLSDRLVDLVNEGFDCAVRLGELPDSSLVSLKLAENRRVCVASPAYLNRRGAPHS 180 Query: 205 PDELVRHNCLAM-SSEGSQRGWTLKQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWR 263 EL RHNCLA+ +S QRGW +Q GKV KV G M C+DG VLH W LAG GLAWR Sbjct: 181 LAELARHNCLALGASANQQRGWMFQQDGKVVSIKVSGTMECSDGAVLHEWCLAGHGLAWR 240 Query: 264 SMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYW 322 S WEVGA + AG LVTVLD+FAAP I+AVF QRRHLPLR+R F+DFL+H Y +P YW Sbjct: 241 SWWEVGADLAAGRLVTVLDEFAAPPVGIHAVFPQRRHLPLRVRLFLDFLKHTYGEPGYW 299