BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3641.p (556 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776425.1| malate synthase [Herbaspirillum seropedicae ... 1088 0.0 gb|AAZ39215.1| malate synthase [Janthinobacterium lividum] 962 0.0 ref|YP_583542.1| malate synthase [Cupriavidus metallidurans CH34... 959 0.0 ref|YP_004753068.1| malate synthase [Collimonas fungivorans Ter3... 951 0.0 ref|YP_002005767.1| malate synthase [Cupriavidus taiwanensis LMG... 947 0.0 >ref|YP_003776425.1| malate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ64517.1| malate synthase protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 1088 bits (2813), Expect = 0.0, Method: Composition-based stats. Identities = 523/528 (99%), Positives = 528/528 (100%) Query: 29 MTQLKLPTGMEISGEIKPGYENVLTFEALSLVAKLSRAFEGRRQELLAARAERVKRLDAG 88 MTQLKLPTGMEISG+IKPGYEN+LTFEALSLVAKLSRAFEGRRQELLAARAERVKRLDAG Sbjct: 1 MTQLKLPTGMEISGDIKPGYENILTFEALSLVAKLSRAFEGRRQELLAARAERVKRLDAG 60 Query: 89 ERPDFLKETESIRSGDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFEDS 148 ERPDFLKETESIR+GDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFEDS Sbjct: 61 ERPDFLKETESIRTGDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFEDS 120 Query: 149 NSPVWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTLDGK 208 NSPVWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTLDGK Sbjct: 121 NSPVWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTLDGK 180 Query: 209 RISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEVGLPQGT 268 RISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNE+GLPQGT Sbjct: 181 RISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEIGLPQGT 240 Query: 269 IKATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVT 328 IKATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVT Sbjct: 241 IKATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVT 300 Query: 329 MTSPFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGIINDKRRDATDGY 388 MTSPFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGIINDKRRDATDGY Sbjct: 301 MTSPFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGIINDKRRDATDGY 360 Query: 389 DGGWVAHPGLVEASMKEFVAVLGDKPNQFEKQRPDVEVKAADLLNFQPETPITEAGLRYN 448 DGGWVAHPGLVEASMKEFVAVLGDKPNQFEKQRPDV+VKAADLLNFQPETPITEAGLRYN Sbjct: 361 DGGWVAHPGLVEASMKEFVAVLGDKPNQFEKQRPDVDVKAADLLNFQPETPITEAGLRYN 420 Query: 449 INVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSAKGNLEDGRKVTADMVR 508 INVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSAKGNLEDGRKVTADMVR Sbjct: 421 INVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSAKGNLEDGRKVTADMVR 480 Query: 509 AMIPEELAKVKQVAGDGPTYDRAAKIFEEMSTSETFAEFLTLPLYEEI 556 AMIPEELAKVKQVAGDGPTYDRAAKIFEEMSTSETFAEFLTLPLYEEI Sbjct: 481 AMIPEELAKVKQVAGDGPTYDRAAKIFEEMSTSETFAEFLTLPLYEEI 528 >gb|AAZ39215.1| malate synthase [Janthinobacterium lividum] Length = 532 Score = 962 bits (2486), Expect = 0.0, Method: Composition-based stats. Identities = 458/532 (86%), Positives = 495/532 (93%), Gaps = 4/532 (0%) Query: 29 MTQ--LKLPTGMEISGEIKPGYENVLTFEALSLVAKLSRAFEGRRQELLAARAERVKRLD 86 MTQ + LP GM+I+GEI PGYE +LT AL+LVAKL+RAFE RRQELLA R ERVKRLD Sbjct: 1 MTQNTIALPEGMQITGEIAPGYEQILTPAALALVAKLTRAFEPRRQELLAVRVERVKRLD 60 Query: 87 AGERPDFLKETESIRSGDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFE 146 AGERPDFL ET IR GDWKIAPIP+AL+CRRVEITGPVERKMVINAFNSGADSYMTDFE Sbjct: 61 AGERPDFLPETAHIRDGDWKIAPIPKALECRRVEITGPVERKMVINAFNSGADSYMTDFE 120 Query: 147 DSNSPVWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTLD 206 DSN+P WDNQ++GQIN++DA+R+TISLE NGKSYKLNDKIATLVVRPRGWHLDEKHV +D Sbjct: 121 DSNTPNWDNQLTGQINMFDAVRKTISLEQNGKSYKLNDKIATLVVRPRGWHLDEKHVLVD 180 Query: 207 GKRISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEVGLPQ 266 GKRISGGIFDFALF+FHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVM QNE+GLPQ Sbjct: 181 GKRISGGIFDFALFMFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMTQNELGLPQ 240 Query: 267 GTIKATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAK 326 GTIKATVLIETI AAFEM+EILYEL+EHS+GLNAGRWDYIFSCIKKFK DKDFCLADRAK Sbjct: 241 GTIKATVLIETILAAFEMDEILYELKEHSSGLNAGRWDYIFSCIKKFKLDKDFCLADRAK 300 Query: 327 VTMTSPFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGIINDKRRDATD 386 VTMT+PFMRAYALLLLKTCHKRGAPAIGGM+ALIPIKNDPEKN IAM G+ NDK RDATD Sbjct: 301 VTMTAPFMRAYALLLLKTCHKRGAPAIGGMAALIPIKNDPEKNDIAMGGVRNDKARDATD 360 Query: 387 GYDGGWVAHPGLVEASMKEFVAVLGDKPNQFEKQRPDVEVKAADLLNFQPETPITEAGLR 446 GYDGGWVAHPGLVE +M EF VLGDKPNQ EKQRPD++VKA+DLLNFQPE PITEAGLR Sbjct: 361 GYDGGWVAHPGLVELAMGEFTKVLGDKPNQIEKQRPDIDVKASDLLNFQPEAPITEAGLR 420 Query: 447 YNINVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSAKGNLEDGRKVTADM 506 YNINVGIHYLG+WLAGNGCVPIHNLMEDAATAEISR+QVWQWIRS+KG LEDGRKVTA+M Sbjct: 421 YNINVGIHYLGSWLAGNGCVPIHNLMEDAATAEISRSQVWQWIRSSKGVLEDGRKVTAEM 480 Query: 507 VRAMIPEELAKVKQVA--GDGPTYDRAAKIFEEMSTSETFAEFLTLPLYEEI 556 VRAMIPEELAKV++ A G+GPTY RA +IFEEMSTSE+FAEFLTLPLYEEI Sbjct: 481 VRAMIPEELAKVQRDAPGGNGPTYVRAGQIFEEMSTSESFAEFLTLPLYEEI 532 >ref|YP_583542.1| malate synthase [Cupriavidus metallidurans CH34] gb|ABF08273.1| malate synthase A [Cupriavidus metallidurans CH34] Length = 527 Score = 959 bits (2479), Expect = 0.0, Method: Composition-based stats. Identities = 453/525 (86%), Positives = 488/525 (92%) Query: 32 LKLPTGMEISGEIKPGYENVLTFEALSLVAKLSRAFEGRRQELLAARAERVKRLDAGERP 91 + LP GM+I+GEI P YE++LT EAL+LV KL RAFE RRQELLAAR R KRLDAGE P Sbjct: 3 ITLPAGMKITGEILPAYEDILTPEALALVDKLHRAFEARRQELLAARVARTKRLDAGELP 62 Query: 92 DFLKETESIRSGDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFEDSNSP 151 DFL ET+SIR GDWK+AP+P+AL+CRRVEITGPVE KMVINAFNSGADSYMTDFEDSN+P Sbjct: 63 DFLPETKSIREGDWKVAPVPKALECRRVEITGPVEAKMVINAFNSGADSYMTDFEDSNTP 122 Query: 152 VWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTLDGKRIS 211 W NQ+ GQ+NL A+RRT++L+SNGK YKLNDKIATL VRPRGWHLDEKHVT+DGKR+S Sbjct: 123 NWHNQMQGQVNLKSAVRRTLTLDSNGKHYKLNDKIATLQVRPRGWHLDEKHVTIDGKRVS 182 Query: 212 GGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEVGLPQGTIKA 271 GGIFDFALFLFHNAKEQ+ARGAGP+FYLPKMESHLEARLWNDIFVMAQ EVGLPQGT+KA Sbjct: 183 GGIFDFALFLFHNAKEQIARGAGPFFYLPKMESHLEARLWNDIFVMAQKEVGLPQGTVKA 242 Query: 272 TVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVTMTS 331 TVLIETI AAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFK DK+FCLADRAKVTMTS Sbjct: 243 TVLIETILAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKVDKNFCLADRAKVTMTS 302 Query: 332 PFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGIINDKRRDATDGYDGG 391 PFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGII DKRRDATDGYDGG Sbjct: 303 PFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGIIGDKRRDATDGYDGG 362 Query: 392 WVAHPGLVEASMKEFVAVLGDKPNQFEKQRPDVEVKAADLLNFQPETPITEAGLRYNINV 451 WVAHPGLVE +MKEFV VLGD+PNQF+KQRPDVEVK ADLLNFQPE PITEAGLR NINV Sbjct: 363 WVAHPGLVEPAMKEFVDVLGDRPNQFDKQRPDVEVKGADLLNFQPEAPITEAGLRMNINV 422 Query: 452 GIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSAKGNLEDGRKVTADMVRAMI 511 GIHYLGAWLAGNGCVPIHNLMEDAATAEISR+QVWQWIRS KG LEDGRKVTA+MVRA+I Sbjct: 423 GIHYLGAWLAGNGCVPIHNLMEDAATAEISRSQVWQWIRSPKGKLEDGRKVTAEMVRALI 482 Query: 512 PEELAKVKQVAGDGPTYDRAAKIFEEMSTSETFAEFLTLPLYEEI 556 PEELAKV++V G G TYDRAA+IFE+MSTSE FAEFLTLPLYEE+ Sbjct: 483 PEELAKVREVVGAGATYDRAAQIFEQMSTSEDFAEFLTLPLYEEV 527 >ref|YP_004753068.1| malate synthase [Collimonas fungivorans Ter331] gb|AEK62245.1| Malate synthase [Collimonas fungivorans Ter331] Length = 528 Score = 951 bits (2458), Expect = 0.0, Method: Composition-based stats. Identities = 453/528 (85%), Positives = 482/528 (91%) Query: 29 MTQLKLPTGMEISGEIKPGYENVLTFEALSLVAKLSRAFEGRRQELLAARAERVKRLDAG 88 MTQL LP GMEI+G I GY +LT EAL+LVAKLSRAFE RRQELLA R ER KRLDAG Sbjct: 1 MTQLTLPAGMEINGAIGAGYAEILTPEALALVAKLSRAFETRRQELLAVRVERAKRLDAG 60 Query: 89 ERPDFLKETESIRSGDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFEDS 148 ERPDFL ET IR+GDWKIAPIP AL+CRRVEITGPVERKMVINAFNSGADSYMTDFEDS Sbjct: 61 ERPDFLPETAHIRNGDWKIAPIPAALECRRVEITGPVERKMVINAFNSGADSYMTDFEDS 120 Query: 149 NSPVWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTLDGK 208 NSPVWDNQI+GQINL DAIR+TISLE NGKSYKLNDK+ATLVVRPRGWHLDEKHV +DGK Sbjct: 121 NSPVWDNQITGQINLRDAIRKTISLEQNGKSYKLNDKVATLVVRPRGWHLDEKHVLIDGK 180 Query: 209 RISGGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEVGLPQGT 268 R+SGGIFDFALF+FHNAKEQLARGAGPYFYLPK+ESHLEARLWNDIFVM QNE+GLPQGT Sbjct: 181 RVSGGIFDFALFMFHNAKEQLARGAGPYFYLPKLESHLEARLWNDIFVMTQNELGLPQGT 240 Query: 269 IKATVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVT 328 IKATVLIETI AAFEM+EILYELREHS+GLNAGRWDYIFSCIKKFK DKDFCLADRAKVT Sbjct: 241 IKATVLIETILAAFEMDEILYELREHSSGLNAGRWDYIFSCIKKFKLDKDFCLADRAKVT 300 Query: 329 MTSPFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGIINDKRRDATDGY 388 MT+PFMR+YALLLLKTCHKR APAIGGM+ALIPIKNDPEKN IAM G+ DK RDATDGY Sbjct: 301 MTAPFMRSYALLLLKTCHKRNAPAIGGMAALIPIKNDPEKNEIAMGGVRVDKARDATDGY 360 Query: 389 DGGWVAHPGLVEASMKEFVAVLGDKPNQFEKQRPDVEVKAADLLNFQPETPITEAGLRYN 448 DGGWVAHPGLVE +M EF VLGDKPNQ KQR DV V AADLL+F+PE PITEAGLRYN Sbjct: 361 DGGWVAHPGLVELAMTEFKKVLGDKPNQISKQREDVNVSAADLLDFKPEAPITEAGLRYN 420 Query: 449 INVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSAKGNLEDGRKVTADMVR 508 INVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRS KG L+DG+KVTA+MV Sbjct: 421 INVGIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSTKGVLDDGKKVTAEMVV 480 Query: 509 AMIPEELAKVKQVAGDGPTYDRAAKIFEEMSTSETFAEFLTLPLYEEI 556 AMIP+EL KVK + GDG TYDRAA+IFEEMSTS +FAEFLTLPLYEEI Sbjct: 481 AMIPQELVKVKALVGDGATYDRAARIFEEMSTSASFAEFLTLPLYEEI 528 >ref|YP_002005767.1| malate synthase [Cupriavidus taiwanensis LMG 19424] emb|CAQ69702.1| malate synthase A [Cupriavidus taiwanensis LMG 19424] Length = 528 Score = 947 bits (2448), Expect = 0.0, Method: Composition-based stats. Identities = 451/526 (85%), Positives = 488/526 (92%), Gaps = 1/526 (0%) Query: 32 LKLPTGMEISGEIKPGYENVLTFEALSLVAKLSRAFEGRRQELLAARAERVKRLDAGERP 91 + LP GM+I+GEI P YE++LT EAL+LV KL RAFE RRQELLAAR ER KRLDAGE P Sbjct: 3 ITLPAGMKITGEILPAYEDILTPEALALVDKLHRAFEPRRQELLAARVERAKRLDAGEVP 62 Query: 92 DFLKETESIRSGDWKIAPIPEALKCRRVEITGPVERKMVINAFNSGADSYMTDFEDSNSP 151 DFL ET+SIR GDWK+AP+P+AL+CRRVEITGPVE KMVINAFNSGADSYMTDFEDSN+P Sbjct: 63 DFLPETKSIREGDWKVAPVPKALECRRVEITGPVEAKMVINAFNSGADSYMTDFEDSNTP 122 Query: 152 VWDNQISGQINLYDAIRRTISLESNGKSYKLNDKIATLVVRPRGWHLDEKHVTLDGKRIS 211 W NQ+ GQ+NL A+RRT++LES GK YKLNDKIATL VRPRGWHLDEKHVT+DGKR+S Sbjct: 123 NWHNQLQGQVNLKAAVRRTLTLESKGKQYKLNDKIATLQVRPRGWHLDEKHVTIDGKRVS 182 Query: 212 GGIFDFALFLFHNAKEQLARGAGPYFYLPKMESHLEARLWNDIFVMAQNEVGLPQGTIKA 271 GGIFDFALFLFHNAKEQ+ARGAGP+FYLPKMESHLEARLWNDIFVMAQ E+GLPQGTIKA Sbjct: 183 GGIFDFALFLFHNAKEQIARGAGPFFYLPKMESHLEARLWNDIFVMAQKEIGLPQGTIKA 242 Query: 272 TVLIETITAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVTMTS 331 TVLIETI AAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVTMT+ Sbjct: 243 TVLIETILAAFEMEEILYELREHSAGLNAGRWDYIFSCIKKFKNDKDFCLADRAKVTMTA 302 Query: 332 PFMRAYALLLLKTCHKRGAPAIGGMSALIPIKNDPEKNAIAMQGIINDKRRDATDGYDGG 391 PFMRAYALLLLKTCH RGAPAIGGMSALIPIKNDPEKNAIAM+GII+DKRRDATDGYDGG Sbjct: 303 PFMRAYALLLLKTCHSRGAPAIGGMSALIPIKNDPEKNAIAMEGIISDKRRDATDGYDGG 362 Query: 392 WVAHPGLVEASMKEFVAVLGDKPNQFEKQRPDVEVKAADLLNFQPETPITEAGLRYNINV 451 WVAHPGLVE +MKEFVAVLGDKPNQFEKQRPDV+VK ADLL+F+PETPITE GLR NINV Sbjct: 363 WVAHPGLVEPAMKEFVAVLGDKPNQFEKQRPDVQVKGADLLDFKPETPITEHGLRMNINV 422 Query: 452 GIHYLGAWLAGNGCVPIHNLMEDAATAEISRAQVWQWIRSAKGNLEDGRKVTADMVRAMI 511 GIHYLGAWLAGNGCVPIHNLMEDAATAEISR+QVWQWIRS KG LEDG KVTA++VR +I Sbjct: 423 GIHYLGAWLAGNGCVPIHNLMEDAATAEISRSQVWQWIRSPKGKLEDGTKVTAELVRKLI 482 Query: 512 PEELAKVKQ-VAGDGPTYDRAAKIFEEMSTSETFAEFLTLPLYEEI 556 PEELAKVK+ V GD TYDRAA+IFE+MSTSE FAEFLTLPLYEE+ Sbjct: 483 PEELAKVKELVGGDTRTYDRAAEIFEQMSTSEDFAEFLTLPLYEEV 528