BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3640.p         (68 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776424.1| cold shock-like transcription regulator prot...   122   2e-26
gb|AAZ39217.1| cold shock transcription regulator [Janthinobacte...   114   5e-24
ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans]...   112   2e-23
ref|YP_004693688.1| cold-shock DNA-binding domain-containing pro...   112   2e-23
ref|ZP_04579427.1| cold shock transcription regulator [Oxalobact...   112   3e-23

>ref|YP_003776424.1| cold shock-like transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
 gb|ADJ64516.1| cold shock-like transcription regulator protein [Herbaspirillum
          seropedicae SmR1]
          Length = 68

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ
Sbjct: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60

Query: 61 ASNIVPAA 68
          ASNIVPAA
Sbjct: 61 ASNIVPAA 68


>gb|AAZ39217.1| cold shock transcription regulator [Janthinobacterium lividum]
 gb|ADX95748.1| cold shock-like protein CspD [Janthinobacterium sp. Ant5-2]
          Length = 67

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 61/66 (92%), Positives = 63/66 (95%)

Query: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATG VKWFND+KGFGFITPDEGGEDLFAHFSAIQSNGFKSL+ENQRVSFEVT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIVP 66
          ASNI P
Sbjct: 61 ASNIQP 66


>ref|YP_001100047.1| RNA chaperone [Herminiimonas arsenicoxydans]
 ref|YP_001353208.1| cold shock transcription regulator protein [Janthinobacterium sp.
          Marseille]
 ref|ZP_08273438.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480]
 emb|CAL61922.1| Cold shock-like protein cspE (CSP-E) [Herminiimonas
          arsenicoxydans]
 gb|ABR91729.1| cold shock transcription regulator protein [Janthinobacterium sp.
          Marseille]
 gb|EGF33101.1| Cold shock protein CspA [Oxalobacteraceae bacterium IMCC9480]
          Length = 67

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/66 (90%), Positives = 63/66 (95%)

Query: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATG VKWFND+KGFGFITPDEGGEDLFAHFSAIQS+GFKSL+ENQRVSFEVT GPKGKQ
Sbjct: 1  MATGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQ 60

Query: 61 ASNIVP 66
          ASNI P
Sbjct: 61 ASNIQP 66


>ref|YP_004693688.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas
          sp. Is79A3]
 gb|AEJ00289.1| cold-shock DNA-binding domain protein [Nitrosomonas sp. Is79A3]
          Length = 67

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATG VKWFNDAKGFGFITPD GGEDLFAHFSAI SNGFKSL+E QRV+F+VTTGPKGKQ
Sbjct: 1  MATGIVKWFNDAKGFGFITPDNGGEDLFAHFSAINSNGFKSLREAQRVTFDVTTGPKGKQ 60

Query: 61 ASNIVP 66
          ASNIVP
Sbjct: 61 ASNIVP 66


>ref|ZP_04579427.1| cold shock transcription regulator [Oxalobacter formigenes
          OXCC13]
 gb|EEO30400.1| cold shock transcription regulator [Oxalobacter formigenes
          OXCC13]
          Length = 67

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/64 (92%), Positives = 64/64 (100%)

Query: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAIQSNGFKSLKENQRVSFEVTTGPKGKQ 60
          MATGTVKWFND+KGFGFITPDEGGED+FAHFSAI+S+GFKSLKENQRVSFEVTTGPKGKQ
Sbjct: 1  MATGTVKWFNDSKGFGFITPDEGGEDVFAHFSAIKSDGFKSLKENQRVSFEVTTGPKGKQ 60

Query: 61 ASNI 64
          A+NI
Sbjct: 61 AANI 64