BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3636.p (1185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776421.1| transcription-repair ATP-dependent coupling ... 2243 0.0 ref|YP_004752445.1| transcription-repair coupling factor [Collim... 1955 0.0 ref|YP_001353098.1| transcription-repair coupling factor [Janthi... 1935 0.0 ref|YP_001100188.1| transcription-repair ATP-dependent coupling ... 1930 0.0 ref|ZP_08276288.1| Transcription-repair coupling factor [Oxaloba... 1872 0.0 >ref|YP_003776421.1| transcription-repair ATP-dependent coupling factor [Herbaspirillum seropedicae SmR1] gb|ADJ64513.1| transcription-repair ATP-dependent coupling factor (helicase superfamily II) protein [Herbaspirillum seropedicae SmR1] Length = 1145 Score = 2243 bits (5811), Expect = 0.0, Method: Composition-based stats. Identities = 1127/1145 (98%), Positives = 1137/1145 (99%) Query: 41 MSFDPKKSLPKAGVRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 100 MSFDPKKSLPKAG+RFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE Sbjct: 1 MSFDPKKSLPKAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 60 Query: 101 IPWFQPKEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA 160 IPWFQP EGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA Sbjct: 61 IPWFQPSEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA 120 Query: 161 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP 220 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP Sbjct: 121 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP 180 Query: 221 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRWRE 280 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRWRE Sbjct: 181 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRWRE 240 Query: 281 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR 340 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR Sbjct: 241 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR 300 Query: 341 FWSDTRSRWTFLHADRERPVLEPRVIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN 400 FWSDTRSRW FLHADRERPVLEP+ IYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN Sbjct: 301 FWSDTRSRWNFLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN 360 Query: 401 IAVNRRAEDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPALCDDWNDFLS 460 IAVNRRA+DPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHP LC+DWN FL+ Sbjct: 361 IAVNRRADDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLA 420 Query: 461 GNEPLMLGVAPLHAGFVTAGGLALITETELYAGSGRRVGSRKQQAATDVEYMVRDLSELK 520 +EPLMLGVAPLHAGFVTA GLAL+TETELYAGSGRRVGSRKQQAATDVEYMVRDLSELK Sbjct: 421 SDEPLMLGVAPLHAGFVTAAGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLSELK 480 Query: 521 IGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPE 580 IGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPE Sbjct: 481 IGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPE 540 Query: 581 DAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFG 640 DAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFG Sbjct: 541 DAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFG 600 Query: 641 FEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPT 700 FEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPT Sbjct: 601 FEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPT 660 Query: 701 TLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEV 760 TLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEV Sbjct: 661 TLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEV 720 Query: 761 KFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT 820 KFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT Sbjct: 721 KFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT 780 Query: 821 APQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPEARI 880 APQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPEARI Sbjct: 781 APQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPEARI 840 Query: 881 GIAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ 940 G+AHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ Sbjct: 841 GVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ 900 Query: 941 LRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 1000 LRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV Sbjct: 901 LRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 960 Query: 1001 LGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCG 1060 LGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCG Sbjct: 961 LGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCG 1020 Query: 1061 DVHERLSLYKRFANCEKADAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKI 1120 DVHERLSLYKR ANCEK+DAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKI Sbjct: 1021 DVHERLSLYKRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKI 1080 Query: 1121 DAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITANMPDLNARVQQVKATM 1180 DAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITA+MPDLNARVQQVKATM Sbjct: 1081 DAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVKATM 1140 Query: 1181 KALTG 1185 KALTG Sbjct: 1141 KALTG 1145 >ref|YP_004752445.1| transcription-repair coupling factor [Collimonas fungivorans Ter331] gb|AEK61622.1| Transcription-repair coupling factor [Collimonas fungivorans Ter331] Length = 1146 Score = 1955 bits (5065), Expect = 0.0, Method: Composition-based stats. Identities = 970/1147 (84%), Positives = 1050/1147 (91%), Gaps = 3/1147 (0%) Query: 41 MSFDPKKSLPKAGVRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 100 MSFD +K LPK RF PA+HGSADA+ LAQAALALK + RML V+VA ATD QRL E Sbjct: 1 MSFDLEKLLPKPASRFVLPALHGSADAFALAQAALALKPQQRMLVVIVADATDGQRLRTE 60 Query: 101 IPWFQPKEGER--LRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPAT 158 IPWFQ G+ LRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCD+L+VPAT Sbjct: 61 IPWFQAGGGQNNGLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDVLLVPAT 120 Query: 159 TALLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDI 218 TAL++MAPP FLA YTFFFKQGE LDE +LKSQLTLAGY+HV QVMSPGEYSVRGGLIDI Sbjct: 121 TALVKMAPPSFLAGYTFFFKQGETLDEARLKSQLTLAGYSHVNQVMSPGEYSVRGGLIDI 180 Query: 219 FPMGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRW 278 FPMGSVLPYRLDLFGD IETIRTFDADTQRS+YPV EVRLLPGREFPMDE +R AFR+RW Sbjct: 181 FPMGSVLPYRLDLFGDAIETIRTFDADTQRSMYPVKEVRLLPGREFPMDETARSAFRSRW 240 Query: 279 REVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAI 338 REVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFE+TATLF+YLPA AMFA VGDI+ AI Sbjct: 241 REVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEDTATLFEYLPATAMFALVGDIDSAI 300 Query: 339 KRFWSDTRSRWTFLHADRERPVLEPRVIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPL 398 +RFWSDT+SR+ FL +DRERP+L P ++L E+FF+L KP RWV++ DA S +SAP+ Sbjct: 301 QRFWSDTQSRYRFLKSDRERPLLAPEALFLTGENFFSLAKPFGRWVVQHSDAASELSAPI 360 Query: 399 PNIAVNRRAEDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPALCDDWNDF 458 PNIAVNRR +DPL NLR++LL+ RVLICAESNGRRETLQQYF EYDL ALCD + DF Sbjct: 361 PNIAVNRRIDDPLTNLRAYLLQSDRRVLICAESNGRRETLQQYFNEYDLPLALCDGYADF 420 Query: 459 LSGNEPLMLGVAPLHAGFVTAGGLALITETELYAGSGRRVGSRKQQAATDVEYMVRDLSE 518 ++ ++ LMLGVAPLHAGF A ITETELYAGSGRR+G +KQ+ AT VE MVRDLSE Sbjct: 421 ITSDKKLMLGVAPLHAGF-ELQQFAFITETELYAGSGRRIGKKKQEGATQVESMVRDLSE 479 Query: 519 LKIGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGAS 578 LKIGDPVVH +HGIGRYMGL+SMDLGEGETEFLHLEYAK+TKLYVPVSQLHVISRYSGAS Sbjct: 480 LKIGDPVVHINHGIGRYMGLLSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGAS 539 Query: 579 PEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADS 638 PEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAF+YSAHDYEAF++S Sbjct: 540 PEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFEYSAHDYEAFSES 599 Query: 639 FGFEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILA 698 FGFEETADQAAAINAVI+DMT GKPMDRLICGDVGFGKTEVALRAAFVAV+GGKQVAILA Sbjct: 600 FGFEETADQAAAINAVIQDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVLGGKQVAILA 659 Query: 699 PTTLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSD 758 PTTLLAEQHA TFADRFA+WPVKIAELSRFR+GKEVTQAIKG+ DGT+DIVIGTHKLLSD Sbjct: 660 PTTLLAEQHAQTFADRFADWPVKIAELSRFRSGKEVTQAIKGMADGTLDIVIGTHKLLSD 719 Query: 759 EVKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVI 818 ++KFSRLGLVIIDEEHRFGVRQKE LK+LRAEVDVLTLTATPIPRTLGMALEGLR+FS+I Sbjct: 720 DIKFSRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMALEGLREFSII 779 Query: 819 ATAPQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPEA 878 ATAPQKRLAIKTFVR+E ESTIREACLRELKRGGQVYFLHNEVETI NRKA LE LLPEA Sbjct: 780 ATAPQKRLAIKTFVRSEGESTIREACLRELKRGGQVYFLHNEVETIQNRKAMLEALLPEA 839 Query: 879 RIGIAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL 938 RI IAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL Sbjct: 840 RIAIAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQL 899 Query: 939 HQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAG 998 HQLRGRVGRSHHQAYAYLLV DVQGL+K AQRRL+AIQQMEELGSGFYLAMHDLEIRGAG Sbjct: 900 HQLRGRVGRSHHQAYAYLLVHDVQGLTKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAG 959 Query: 999 EVLGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDF 1058 EVLGD+QSGE+HEIGFQ+YSDMLNEAVR+LK+G+EPDLAAPLSTTTEINLH PALLPND+ Sbjct: 960 EVLGDNQSGEMHEIGFQLYSDMLNEAVRSLKNGKEPDLAAPLSTTTEINLHVPALLPNDY 1019 Query: 1059 CGDVHERLSLYKRFANCEKADAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGII 1118 CGDVHERLS+YKR ANC D ID LQEELIDRFGKLPD AKALIETHRLRIAAK +GI+ Sbjct: 1020 CGDVHERLSIYKRLANCNAQDKIDDLQEELIDRFGKLPDPAKALIETHRLRIAAKSIGIV 1079 Query: 1119 KIDAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITANMPDLNARVQQVKA 1178 KIDAH+++ALLQFVPNPPIDAMRIIEL+QKNR +KLNG DKLRIT NMPDL AR+ QVKA Sbjct: 1080 KIDAHTDSALLQFVPNPPIDAMRIIELIQKNRHIKLNGQDKLRITVNMPDLAARLTQVKA 1139 Query: 1179 TMKALTG 1185 T+KAL G Sbjct: 1140 TIKALAG 1146 >ref|YP_001353098.1| transcription-repair coupling factor [Janthinobacterium sp. Marseille] gb|ABR88919.1| transcription-repair coupling factor (superfamily II helicase) [Janthinobacterium sp. Marseille] Length = 1147 Score = 1936 bits (5014), Expect = 0.0, Method: Composition-based stats. Identities = 949/1146 (82%), Positives = 1046/1146 (91%), Gaps = 4/1146 (0%) Query: 41 MSFDPKKSLPKAGVRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 100 MSFD KKSLPK RF P VHGSADA++LAQAA LK++ RML VVVA A+DAQRLLAE Sbjct: 1 MSFDLKKSLPKPATRFVLPPVHGSADAFVLAQAAAELKSQKRMLTVVVANASDAQRLLAE 60 Query: 101 IPWFQPKEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA 160 IPWF + E LRCHLLPDWETLPYDAFSPHQDLVSERLATLYEV +GQCD+LIVPATTA Sbjct: 61 IPWFGSEPNE-LRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVLNGQCDVLIVPATTA 119 Query: 161 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP 220 L+RMAPP FLA+YTFFFKQGE LDE KLK+QL LAGY+ V QVMSPGEYSVRGGLIDI+P Sbjct: 120 LVRMAPPAFLASYTFFFKQGETLDEAKLKAQLQLAGYSPVKQVMSPGEYSVRGGLIDIYP 179 Query: 221 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRWRE 280 MGSVLPYR+DLFGDTI++IRTFDAD+QRSLYPV EVRLLP REFPMDE +R AFR RWRE Sbjct: 180 MGSVLPYRIDLFGDTIDSIRTFDADSQRSLYPVKEVRLLPAREFPMDEEARTAFRGRWRE 239 Query: 281 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR 340 +FEGDPSRS IYKDIG+GIASAGIEYYLPLFFE+T TLF YLPA+ FA +GDIE AIKR Sbjct: 240 IFEGDPSRSVIYKDIGSGIASAGIEYYLPLFFEQTNTLFDYLPADTTFALIGDIEAAIKR 299 Query: 341 FWSDTRSRWTFLHADRERPVLEPRVIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN 400 FW DT+SR+ FL +DRERP+L P I+L DE+FFTL KP+ RW+++ D S +SAPLPN Sbjct: 300 FWDDTQSRYRFLKSDRERPILAPEQIFLSDENFFTLAKPYGRWIIQNQDVASELSAPLPN 359 Query: 401 IAVNRRAEDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPALCDDWNDFLS 460 IAVNRRA+DPLVNLR++LL+ +RV+ICAESNGRRETLQQYF EYDL A + + DF S Sbjct: 360 IAVNRRADDPLVNLRAYLLQTDKRVMICAESNGRRETLQQYFNEYDLPLAATEGFADFSS 419 Query: 461 GNEPLMLGVAPLHAGFVTA---GGLALITETELYAGSGRRVGSRKQQAATDVEYMVRDLS 517 + LMLGVAP+HAGF GGLA ITETELYAGSGRRVGS+KQ+ AT VE MVRDLS Sbjct: 420 ASAKLMLGVAPMHAGFELGNALGGLAFITETELYAGSGRRVGSKKQEGATQVESMVRDLS 479 Query: 518 ELKIGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGA 577 ELKIGDPVVH +HGIGRYMGL SMDLGEGETEFLHLEYAK+TKLYVPVSQLHVISRYSGA Sbjct: 480 ELKIGDPVVHVNHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGA 539 Query: 578 SPEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFAD 637 SPEDAPLHALGSGQWEKAKR+AA+++RDTAAELLNLYARRALR+GH+F+YSAHDYEAFA+ Sbjct: 540 SPEDAPLHALGSGQWEKAKRRAAEKIRDTAAELLNLYARRALREGHSFEYSAHDYEAFAE 599 Query: 638 SFGFEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAIL 697 SFGFEETADQAAAINAVIKDMT GKPMDRLICGDVGFGKTEVALRAAFVAV+GGKQVAIL Sbjct: 600 SFGFEETADQAAAINAVIKDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVLGGKQVAIL 659 Query: 698 APTTLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLS 757 APTTLLAEQHA TFADRFA+WPV+IAELSRFRT KEVTQAIKG+ DGTIDIVIGTHKLLS Sbjct: 660 APTTLLAEQHAQTFADRFADWPVRIAELSRFRTAKEVTQAIKGMADGTIDIVIGTHKLLS 719 Query: 758 DEVKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSV 817 ++KFSRLGLVIIDEEHRFGVRQKEALK+LRAEVDVLTLTATPIPRTLGMALEGLRDFS+ Sbjct: 720 GDIKFSRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSI 779 Query: 818 IATAPQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPE 877 IATAPQKRLAIKTFVR+E +S IREACLRELKRGGQVYFLHNEVETI NRKA LE+L+PE Sbjct: 780 IATAPQKRLAIKTFVRSENDSVIREACLRELKRGGQVYFLHNEVETIQNRKAMLEELMPE 839 Query: 878 ARIGIAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ 937 ARIG+AHGQ+HERDLE++MRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ Sbjct: 840 ARIGVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ 899 Query: 938 LHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGA 997 LHQLRGRVGRSHHQAYAYLLV DVQGLSK AQRRL+AIQQMEELGSGFYLAMHDLEIRGA Sbjct: 900 LHQLRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGA 959 Query: 998 GEVLGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPND 1057 GEVLGD+QSGE+ EIGFQ+YSDMLNEAVR+LK+G+EPDLAAPL++TTEINLH PALLPN Sbjct: 960 GEVLGDNQSGEMSEIGFQLYSDMLNEAVRSLKNGKEPDLAAPLASTTEINLHVPALLPNT 1019 Query: 1058 FCGDVHERLSLYKRFANCEKADAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGI 1117 +CGDVHERLS+YKR ANC+ ADAI+ LQEELIDRFGKLPDAA+AL+ETHRLR+AA P+GI Sbjct: 1020 YCGDVHERLSIYKRLANCKTADAINDLQEELIDRFGKLPDAAQALVETHRLRVAAIPVGI 1079 Query: 1118 IKIDAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITANMPDLNARVQQVK 1177 IKIDAH+E+A LQF PNPPIDAMRIIEL+QKNR +KLNG DKLRITA+MPDL ARV Q+K Sbjct: 1080 IKIDAHAESATLQFEPNPPIDAMRIIELIQKNRHIKLNGQDKLRITASMPDLAARVSQIK 1139 Query: 1178 ATMKAL 1183 T++AL Sbjct: 1140 NTIRAL 1145 >ref|YP_001100188.1| transcription-repair ATP-dependent coupling factor [Herminiimonas arsenicoxydans] emb|CAL62064.1| Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase Mfd) [Herminiimonas arsenicoxydans] Length = 1148 Score = 1930 bits (4999), Expect = 0.0, Method: Composition-based stats. Identities = 945/1146 (82%), Positives = 1045/1146 (91%), Gaps = 3/1146 (0%) Query: 41 MSFDPKKSLPKAGVRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 100 MSFD KKSLPK RF PAVHGSADAY+LAQAA LK++ RMLAVVVA A+DAQRLLAE Sbjct: 1 MSFDLKKSLPKPASRFVLPAVHGSADAYVLAQAAAELKSQKRMLAVVVANASDAQRLLAE 60 Query: 101 IPWFQPKEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA 160 IPWF + E+ RCHLLPDWETLPYDAFSPHQDLVSERLATLYEV +GQCD+LIVPATTA Sbjct: 61 IPWFTGEGQEKPRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVLNGQCDVLIVPATTA 120 Query: 161 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP 220 L+RMAPP FLA+YTFFFKQGEKLDE KLK+QL LAGY+ V QVMSPGEYSVRGGLIDIFP Sbjct: 121 LVRMAPPAFLASYTFFFKQGEKLDEAKLKAQLQLAGYSPVKQVMSPGEYSVRGGLIDIFP 180 Query: 221 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRWRE 280 MG+VLPYR+DLFGDTI+TIRTFDADTQRSLYPV EVRLLP REFPMDE +R FR RWRE Sbjct: 181 MGAVLPYRIDLFGDTIDTIRTFDADTQRSLYPVREVRLLPAREFPMDEEARTTFRGRWRE 240 Query: 281 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR 340 +FEGDPSRS IYKDIG+GIASAGIEYYLPLFFEET TLF YLP + FA VGDI++AI+R Sbjct: 241 IFEGDPSRSMIYKDIGSGIASAGIEYYLPLFFEETKTLFDYLPPDTTFALVGDIDEAIRR 300 Query: 341 FWSDTRSRWTFLHADRERPVLEPRVIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN 400 FWSDT+SR++FL +DRERP+L P I+L DE+FFTL KP RWV++++D S +SA LPN Sbjct: 301 FWSDTQSRYSFLKSDRERPLLAPEQIFLSDENFFTLAKPFGRWVIQSEDVASELSASLPN 360 Query: 401 IAVNRRAEDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPALCDDWNDFLS 460 IAVNRRA+DPLVNLRS+LL+ +RVLICAESNGRRETLQQYF EY+L DD+ DF + Sbjct: 361 IAVNRRADDPLVNLRSWLLQTDKRVLICAESNGRRETLQQYFNEYNLALTPADDFADFST 420 Query: 461 GNEPLMLGVAPLHAGF---VTAGGLALITETELYAGSGRRVGSRKQQAATDVEYMVRDLS 517 + LMLGVAP+HAGF GGLA ITETELYAGSGRR+GS+KQ+ AT VE MVRDLS Sbjct: 421 ASAKLMLGVAPMHAGFELGAALGGLAFITETELYAGSGRRIGSKKQEGATQVEAMVRDLS 480 Query: 518 ELKIGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGA 577 ELKIGDPVVH +HGIGRYMGL SMDLGEGETEFLHLEYAK+TKLYVPVSQLHVISRYSGA Sbjct: 481 ELKIGDPVVHVNHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGA 540 Query: 578 SPEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFAD 637 SPEDAPLHALGSGQWEKAKR+AA+++RDTAAELLNLYARRALR+GH+F+YSAHDY AFAD Sbjct: 541 SPEDAPLHALGSGQWEKAKRRAAEKIRDTAAELLNLYARRALREGHSFEYSAHDYAAFAD 600 Query: 638 SFGFEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAIL 697 SFGFEET DQAAAINAVI+DMT GKPMDRLICGDVGFGKTEVALRAAF+AV+GGKQVAIL Sbjct: 601 SFGFEETVDQAAAINAVIQDMTSGKPMDRLICGDVGFGKTEVALRAAFIAVLGGKQVAIL 660 Query: 698 APTTLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLS 757 APTTLLAEQHA TFADRFA+WPV+IAELSRFR+GKE+TQA+KG+ DGTIDIVIGTHKLLS Sbjct: 661 APTTLLAEQHAQTFADRFADWPVRIAELSRFRSGKEITQAMKGMADGTIDIVIGTHKLLS 720 Query: 758 DEVKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSV 817 + KFSRLGLVIIDEEHRFGVRQKE LK+LRAEVDVLTLTATPIPRTLGMALEGLRDFS+ Sbjct: 721 ADTKFSRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMALEGLRDFSI 780 Query: 818 IATAPQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPE 877 IATAPQKRLAIKTFVR+E S IREACLRELKRGGQVYFLHNEVETI NRKA LE+L+PE Sbjct: 781 IATAPQKRLAIKTFVRSENASVIREACLRELKRGGQVYFLHNEVETIENRKAMLEELMPE 840 Query: 878 ARIGIAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ 937 ARIG+AHGQ+HERDLE++MRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ Sbjct: 841 ARIGVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ 900 Query: 938 LHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGA 997 LHQLRGRVGRSHHQAYAYLLV DVQGLSK AQRRL+AIQQMEELGSGFYLAMHDLEIRGA Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGA 960 Query: 998 GEVLGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPND 1057 GEVLGD+QSGE+ EIGFQ+YSDMLNEAVR+LK+G+EPDLAAPL+TTTEINLH PALLP+ Sbjct: 961 GEVLGDNQSGEMTEIGFQLYSDMLNEAVRSLKNGKEPDLAAPLATTTEINLHVPALLPST 1020 Query: 1058 FCGDVHERLSLYKRFANCEKADAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGI 1117 +CGDVHERLS+YKR ANC+ DA++ LQEELIDRFGKLPDAA+AL+ETHRLR+AA P+GI Sbjct: 1021 YCGDVHERLSIYKRLANCKTQDAVNDLQEELIDRFGKLPDAAQALVETHRLRVAAVPVGI 1080 Query: 1118 IKIDAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITANMPDLNARVQQVK 1177 IKIDAH+E+A LQF PNPPIDAMRIIEL+QKNR +KL+G DKLRITANMPDL ARV Q+K Sbjct: 1081 IKIDAHAESATLQFEPNPPIDAMRIIELIQKNRHIKLSGQDKLRITANMPDLAARVLQIK 1140 Query: 1178 ATMKAL 1183 T++AL Sbjct: 1141 NTIRAL 1146 >ref|ZP_08276288.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium IMCC9480] gb|EGF30242.1| Transcription-repair coupling factor [Oxalobacteraceae bacterium IMCC9480] Length = 1120 Score = 1872 bits (4849), Expect = 0.0, Method: Composition-based stats. Identities = 912/1120 (81%), Positives = 1005/1120 (89%), Gaps = 3/1120 (0%) Query: 69 LLAQAALALKAEGRMLAVVVAGATDAQRLLAEIPWFQPKEGERLRCHLLPDWETLPYDAF 128 +LAQA ALKA+ +MLA+VVA A DAQRLL EIPWF + LRCHLLPDWETLPYDAF Sbjct: 1 MLAQAGAALKAQNKMLAIVVANAADAQRLLTEIPWFAQEGEPALRCHLLPDWETLPYDAF 60 Query: 129 SPHQDLVSERLATLYEVQSGQCDLLIVPATTALLRMAPPQFLAAYTFFFKQGEKLDEGKL 188 SPHQDLVSERLATLYE+Q+GQCD+LIVPATTAL+RMAPP FLAAYTFFFKQGE LDE +L Sbjct: 61 SPHQDLVSERLATLYEMQNGQCDVLIVPATTALVRMAPPSFLAAYTFFFKQGEVLDEARL 120 Query: 189 KSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYRLDLFGDTIETIRTFDADTQR 248 K+QL+LAGYT V QVMSPGEYSVRGGLID+FPMGS LPYR+DLFGDTIETIRTFDADTQR Sbjct: 121 KTQLSLAGYTPVSQVMSPGEYSVRGGLIDLFPMGSALPYRIDLFGDTIETIRTFDADTQR 180 Query: 249 SLYPVPEVRLLPGREFPMDEASRLAFRNRWREVFEGDPSRSAIYKDIGNGIASAGIEYYL 308 SLYPV EVRLLPGREFPMD+ +R AFR RWREVFEGDPSRS++YKDIGNGIA+AGIEYYL Sbjct: 181 SLYPVREVRLLPGREFPMDDLARTAFRGRWREVFEGDPSRSSVYKDIGNGIAAAGIEYYL 240 Query: 309 PLFFEETATLFQYLPANAMFATVGDIEQAIKRFWSDTRSRWTFLHADRERPVLEPRVIYL 368 PLFFE+T TLF YLP + FA GDI+ AI RFW+DTRSR FL +DRERP+L P ++L Sbjct: 241 PLFFEDTRTLFDYLPGDTTFALSGDIDGAIGRFWNDTRSRHNFLKSDRERPILSPEKLFL 300 Query: 369 DDEDFFTLLKPHARWVLKTDDAPSAISAPLPNIAVNRRAEDPLVNLRSFLLKGAERVLIC 428 DE+FFT K RW+L DD PS +SAPLPNIAVNRR++DPL+NLRS+LL A+RV+IC Sbjct: 301 TDEEFFTRAKSFGRWILHADDQPSELSAPLPNIAVNRRSDDPLINLRSYLLYSAKRVMIC 360 Query: 429 AESNGRRETLQQYFAEYDLHPALCDDWNDFLSGNEPLMLGVAPLHAGFVTA---GGLALI 485 AE+NGRRETLQQYF EY L C+ + F++G+ LMLGVAP+HAGF G + I Sbjct: 361 AETNGRRETLQQYFNEYQLDLTPCEGYAGFVNGSAKLMLGVAPMHAGFELGEALGNVVFI 420 Query: 486 TETELYAGSGRRVGSRKQQAATDVEYMVRDLSELKIGDPVVHSSHGIGRYMGLVSMDLGE 545 TETELYAGSGRRVG +KQ+AAT VE MVRDLSELKIGDPVVHS+HGIGRYMGLVSMDLGE Sbjct: 421 TETELYAGSGRRVGHKKQEAATQVESMVRDLSELKIGDPVVHSNHGIGRYMGLVSMDLGE 480 Query: 546 GETEFLHLEYAKETKLYVPVSQLHVISRYSGASPEDAPLHALGSGQWEKAKRKAAQQVRD 605 GETEFL+L+YAKE KLYVPVSQLHVISRYSGASPEDAPLH+LGSGQWEKAKR+AAQQ+RD Sbjct: 481 GETEFLYLDYAKEAKLYVPVSQLHVISRYSGASPEDAPLHSLGSGQWEKAKRRAAQQIRD 540 Query: 606 TAAELLNLYARRALRQGHAFQYSAHDYEAFADSFGFEETADQAAAINAVIKDMTGGKPMD 665 TAAELLNLYARRALR+GHAF++SAHDY FADSFGFEET DQAAAINAVI DMT GKPMD Sbjct: 541 TAAELLNLYARRALRKGHAFEFSAHDYANFADSFGFEETVDQAAAINAVIGDMTSGKPMD 600 Query: 666 RLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHAATFADRFANWPVKIAEL 725 RLICGDVGFGKTEVALRA FVAV+GGKQVAILAPTTLLAEQHA TFADRFA+WPVKIAEL Sbjct: 601 RLICGDVGFGKTEVALRATFVAVLGGKQVAILAPTTLLAEQHAQTFADRFADWPVKIAEL 660 Query: 726 SRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLVIIDEEHRFGVRQKEALK 785 SRFR+GKE+ A+KG+ DGT+DIVIGTHKLLSD+VKF RLGLVIIDEEHRFGVRQKEALK Sbjct: 661 SRFRSGKEINTAMKGMADGTLDIVIGTHKLLSDDVKFERLGLVIIDEEHRFGVRQKEALK 720 Query: 786 SLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRAEQESTIREACL 845 +LRAEVDVLTLTATPIPRTLGMALEGLRDFS+IATAPQKRLAIKTFVR+E ES IREACL Sbjct: 721 ALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIATAPQKRLAIKTFVRSEGESVIREACL 780 Query: 846 RELKRGGQVYFLHNEVETIANRKAALEQLLPEARIGIAHGQMHERDLEKVMRDFVAQRFN 905 RELKRGGQVYFLHNEV+TI NRK LE LLPEARIG+AHGQMHER+LEKVMRDFVAQRFN Sbjct: 781 RELKRGGQVYFLHNEVDTIENRKQMLEALLPEARIGVAHGQMHERELEKVMRDFVAQRFN 840 Query: 906 ILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVQDVQGLS 965 ILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLV DV GL+ Sbjct: 841 ILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDVAGLT 900 Query: 966 KQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSGEIHEIGFQMYSDMLNEAV 1025 K AQRRL+AIQQMEELGSGFYLAMHDLEIRGAGEVLGD+QSGE+ EIGFQMYSDMLN AV Sbjct: 901 KLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGDNQSGEMTEIGFQMYSDMLNLAV 960 Query: 1026 RALKDGREPDLAAPLSTTTEINLHAPALLPNDFCGDVHERLSLYKRFANCEKADAIDALQ 1085 R+L++G+EPDLAAPL++TTEINLH PALLP ++CGDVHERLSLYKR A+C AD ID LQ Sbjct: 961 RSLRNGKEPDLAAPLASTTEINLHVPALLPAEYCGDVHERLSLYKRLASCNDADKIDDLQ 1020 Query: 1086 EELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKIDAHSEAALLQFVPNPPIDAMRIIEL 1145 EE+IDRFGKLP+ AKAL+ETHRLR+ AKP+GIIKIDAH EAA L F PNPPIDAMRII L Sbjct: 1021 EEMIDRFGKLPEPAKALVETHRLRVLAKPIGIIKIDAHGEAAQLVFEPNPPIDAMRIISL 1080 Query: 1146 VQKNRQVKLNGPDKLRITANMPDLNARVQQVKATMKALTG 1185 +QKNR +KLNG DKLRITA+MPDL ARV Q+K T++AL G Sbjct: 1081 IQKNRHIKLNGQDKLRITASMPDLAARVLQIKTTIRALVG 1120