BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3633.p (541 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776418.1| methyl-accepting chemotaxis protein [Herbasp... 779 0.0 ref|YP_001351708.1| methyl-accepting chemotaxis protein [Janthin... 603 e-170 ref|YP_004753017.1| methyl-accepting chemotaxis sensory transduc... 539 e-151 ref|YP_001897590.1| methyl-accepting chemotaxis sensory transduc... 536 e-150 ref|ZP_06840450.1| methyl-accepting chemotaxis sensory transduce... 528 e-147 >ref|YP_003776418.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ64510.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 541 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 500/541 (92%), Positives = 519/541 (95%) Query: 1 MKNWTIKQRILGSFGLILLLMALMAGISAVNLGHIEKGATALRDDSTPGLYYSTQINAAW 60 MKNWTIKQRILGSF LILLLMALMAGISAVNLG IE GATALR DSTPGLYYST INAAW Sbjct: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 Query: 61 YENLLMTQQIIQIDANDAERQADLALLRRNAERLDRLQEDYDKTIFSDADRKLFEQFKET 120 YENLLM+QQI QID N+AERQADLALLRRN ERLDRLQEDYDKTIFSD+DRKLF+QFKET Sbjct: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 Query: 121 RQKYRAVVSEVLKMDFSQRAPIDKIVNEQIRPQWRTGYQLTQRMVETNKGIADDAAQRIG 180 RQKYRA++SEVLKMDFSQRAPIDK+ NEQIRPQWR GYQLTQRMV+TNK IADDAA RI Sbjct: 121 RQKYRAMISEVLKMDFSQRAPIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRIN 180 Query: 181 DAVNSAQFTLMSALMAALLVALVCGFFLMRAINEPLQKLMGLLDIMRSGDFSRRVELDRK 240 DAV SAQF ++S+LMAALL ALVCGFFLMRAINEPLQKLMG+LD MRSGDFSRRV LDR Sbjct: 181 DAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALDRN 240 Query: 241 DEFGVLGNGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEIG 300 DEFG LG+GFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEIG Sbjct: 241 DEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEIG 300 Query: 301 ATSREIHATSRDLVRTMNEVSVVSEQTSALAGSGQAGLTRMGDTMQNVMDAAGSVSAKLA 360 ATSREIH+TSRDLVRTMNEVSVVSEQTSALAG+GQAGLTRM DTMQNVMDAAGSVSAKLA Sbjct: 301 ATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSAKLA 360 Query: 361 ILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTAV 420 ILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGE+GRGFSVVATEIRRLADQTAV Sbjct: 361 ILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTAV 420 Query: 421 ATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQI 480 ATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQI Sbjct: 421 ATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQI 480 Query: 481 VNEGMQAQASSAEQINQALVQLSEAAQQTVESLQQSSQAIDELNVVSNELRNGVSRFKVT 540 VNEGMQAQA+SAEQINQALVQLSEAAQQTVESLQQSSQAI+EL+VVSNELRNGVSRFKV Sbjct: 481 VNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFKVQ 540 Query: 541 D 541 D Sbjct: 541 D 541 >ref|YP_001351708.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR90026.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 603 bits (1555), Expect = e-170, Method: Composition-based stats. Identities = 391/541 (72%), Positives = 462/541 (85%), Gaps = 1/541 (0%) Query: 1 MKNWTIKQRILGSFGLILLLMALMAGISAVNLGHIEKGATALRDDSTPGLYYSTQINAAW 60 MKNWTIKQRILGSF LILLLMALMA ++ V L I+ A++L+DDSTPGL+ S INA W Sbjct: 1 MKNWTIKQRILGSFALILLLMALMAAVAWVRLAKIDDAASSLQDDSTPGLHASAMINAYW 60 Query: 61 YENLLMTQQIIQIDANDAERQADLALLRRNAERLDRLQEDYDKTIFSDADRKLFEQFKET 120 +EN ++ QQI +I +DA R+ DLA L+ N E ++ LQ Y+ +IF+ D+ FE+FK+ Sbjct: 61 FENYMLIQQIAEIADSDANRKNDLAKLQVNNEHINALQVQYENSIFAADDKAQFEEFKQA 120 Query: 121 RQKYRAVVSEVLKMDFSQRAP-IDKIVNEQIRPQWRTGYQLTQRMVETNKGIADDAAQRI 179 R KY+ + E+L+ D S+ +P + K+ EQ+RP W+ + L Q++ E NK IAD +AQ I Sbjct: 121 RAKYQQIQQEILRQDLSRTSPLVHKLFIEQLRPAWKDAHALIQKITENNKVIADQSAQHI 180 Query: 180 GDAVNSAQFTLMSALMAALLVALVCGFFLMRAINEPLQKLMGLLDIMRSGDFSRRVELDR 239 D+V+ A+ +++AL+ ALL A++ G+FL+RAI P+Q+L+G+LD+MRSGDFS+R+ L+R Sbjct: 181 IDSVHQAKINMVAALVVALLAAIISGYFLLRAITIPMQRLIGILDVMRSGDFSQRLHLER 240 Query: 240 KDEFGVLGNGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEI 299 KDEF L +GF+RMTDELT LV QAQKSS +V++SVTEIAAT++QQQATAAETAATTTEI Sbjct: 241 KDEFEHLASGFNRMTDELTILVGQAQKSSGQVSSSVTEIAATSKQQQATAAETAATTTEI 300 Query: 300 GATSREIHATSRDLVRTMNEVSVVSEQTSALAGSGQAGLTRMGDTMQNVMDAAGSVSAKL 359 GATSREI ATSRDLVRTMNEVS+VSEQ + LAGSGQ GLTRM DTMQ VMDAAGSVS KL Sbjct: 301 GATSREIFATSRDLVRTMNEVSLVSEQAATLAGSGQTGLTRMEDTMQAVMDAAGSVSGKL 360 Query: 360 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTA 419 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTA Sbjct: 361 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTA 420 Query: 420 VATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQ 479 VATYDIE+MVKEIQSAVAAGVMGMDKFSDQVRRGMQ+VQ GSQLSQIIAQVQALAPRFQ Sbjct: 421 VATYDIELMVKEIQSAVAAGVMGMDKFSDQVRRGMQEVQQVGSQLSQIIAQVQALAPRFQ 480 Query: 480 IVNEGMQAQASSAEQINQALVQLSEAAQQTVESLQQSSQAIDELNVVSNELRNGVSRFKV 539 +VNEGMQAQA+SAEQINQALVQLSEAAQQTVESLQQSSQAIDEL++VSN LRNGVSRFKV Sbjct: 481 VVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIDELHLVSNGLRNGVSRFKV 540 Query: 540 T 540 + Sbjct: 541 S 541 >ref|YP_004753017.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK62194.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 542 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 341/540 (63%), Positives = 420/540 (77%), Gaps = 2/540 (0%) Query: 1 MKNWTIKQRILGSFGLILLLMALMAGISAVNLGHIEKGATALRDDSTPGLYYSTQINAAW 60 MK WTI+QR+L SFGLIL LM MAGI+ + L IE + + DS PGL ST I + W Sbjct: 1 MKQWTIRQRMLVSFGLILALMGFMAGITYLKLAAIEHETISFQTDSMPGLELSTGIRSTW 60 Query: 61 YENLLMTQQIIQIDANDAERQADLALLRRNAERLDRLQEDYDKTIFSDADRKLFEQFKET 120 +++ L+ Q++ +D N ER+ DLA +R +AE++D+L DYDKTIF DR F FK Sbjct: 61 FQSYLLALQVVALD-NPDERKQDLATMRADAEKMDKLIADYDKTIFESEDRTNFNAFKAA 119 Query: 121 RQKYRAVVSEVLKMDFSQRAPIDK-IVNEQIRPQWRTGYQLTQRMVETNKGIADDAAQRI 179 R +Y +++EVLK+D Q+ P + ++ +Q+ P W+ G ++ + N+ + +I Sbjct: 120 RAQYDRLMAEVLKLDDLQKNPQARALLIQQLEPAWQLGRSAATQLRDFNQQAEVRSVDKI 179 Query: 180 GDAVNSAQFTLMSALMAALLVALVCGFFLMRAINEPLQKLMGLLDIMRSGDFSRRVELDR 239 AV A+ TL+ AL+ AL+ AL+CGFFL+RAI P+ L+ L+++RSGD S+R+ L+R Sbjct: 180 EAAVVVAKSTLLVALVIALVAALICGFFLLRAITRPMADLIAALEVIRSGDLSQRLNLNR 239 Query: 240 KDEFGVLGNGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEI 299 DEF L G +RM+DELT LV QAQKS+ +V TSV EIAATA+QQQATA ETAATTTEI Sbjct: 240 HDEFQALEVGLNRMSDELTGLVGQAQKSAVQVTTSVVEIAATAKQQQATANETAATTTEI 299 Query: 300 GATSREIHATSRDLVRTMNEVSVVSEQTSALAGSGQAGLTRMGDTMQNVMDAAGSVSAKL 359 GATSREI++TSR+LV TMNEVS +E+ + L G+GQAGLT+M DTM +VMDAAGSV+AKL Sbjct: 300 GATSREIYSTSRELVNTMNEVSSGAEEAARLVGTGQAGLTQMEDTMHHVMDAAGSVNAKL 359 Query: 360 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTA 419 AILNEKA NINQVVTTITKVA QTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTA Sbjct: 360 AILNEKASNINQVVTTITKVAGQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTA 419 Query: 420 VATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQ 479 VATYDIE MVKEIQSAV+AGVMGMDKFS++VRRG+ DVQ G+QLSQII QVQAL PRFQ Sbjct: 420 VATYDIEQMVKEIQSAVSAGVMGMDKFSEEVRRGIADVQNVGTQLSQIIQQVQALTPRFQ 479 Query: 480 IVNEGMQAQASSAEQINQALVQLSEAAQQTVESLQQSSQAIDELNVVSNELRNGVSRFKV 539 VNEG+QAQA AEQI+QAL QLSEAAQQ+VESL+QSSQAIDEL + +N LRNGVSRFK+ Sbjct: 480 SVNEGVQAQAVGAEQISQALTQLSEAAQQSVESLRQSSQAIDELTLTANGLRNGVSRFKL 539 >ref|YP_001897590.1| methyl-accepting chemotaxis sensory transducer [Burkholderia phytofirmans PsJN] gb|ACD18366.1| methyl-accepting chemotaxis sensory transducer [Burkholderia phytofirmans PsJN] Length = 541 Score = 536 bits (1381), Expect = e-150, Method: Composition-based stats. Identities = 329/540 (60%), Positives = 416/540 (77%) Query: 1 MKNWTIKQRILGSFGLILLLMALMAGISAVNLGHIEKGATALRDDSTPGLYYSTQINAAW 60 MK WTI+QRIL SFG++L++M MA ++ LG I++ A + ++DS PGLYY+T + AAW Sbjct: 1 MKQWTIRQRILCSFGIVLIVMLAMAIVTFEQLGGIDRDAKSQQEDSMPGLYYATAMRAAW 60 Query: 61 YENLLMTQQIIQIDANDAERQADLALLRRNAERLDRLQEDYDKTIFSDADRKLFEQFKET 120 +EN +TQ+++ +DA+ + D L+ + L +L DY TIF D DR F F++ Sbjct: 61 FENYTVTQRLVYVDADPESVKRDTERLQDTEQTLQKLLGDYGATIFRDNDRGFFNDFRQQ 120 Query: 121 RQKYRAVVSEVLKMDFSQRAPIDKIVNEQIRPQWRTGYQLTQRMVETNKGIADDAAQRIG 180 +Y + + +L S + +I N Q+ P W G +++V+ NK AD AA+ I Sbjct: 121 HTQYLPIQASLLNALPSSKENAVRIFNTQLTPIWEAGRLSARKLVDNNKADADKAAESIR 180 Query: 181 DAVNSAQFTLMSALMAALLVALVCGFFLMRAINEPLQKLMGLLDIMRSGDFSRRVELDRK 240 +V + + L+ L+ A +VA++ G++L+RA+ P+ K++ ++D+MR+GD ++R++L+R Sbjct: 181 SSVEATRIVLLVMLLIAAIVAVLAGYWLLRAVTTPMAKVLRVVDVMRTGDLTQRLQLNRA 240 Query: 241 DEFGVLGNGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEIG 300 DE G L GF+RMTDELTALV QAQKS+ +V TSVTEIAAT+R+QQATA ETAATTTEIG Sbjct: 241 DEIGALEAGFNRMTDELTALVGQAQKSAVQVTTSVTEIAATSREQQATANETAATTTEIG 300 Query: 301 ATSREIHATSRDLVRTMNEVSVVSEQTSALAGSGQAGLTRMGDTMQNVMDAAGSVSAKLA 360 ATSREI ATSRDL+RTMNEVS V+ Q++ALAG+G AGL RM +TM+ VM+AAGSV+AKLA Sbjct: 301 ATSREIFATSRDLLRTMNEVSEVAGQSAALAGTGHAGLARMEETMRLVMEAAGSVNAKLA 360 Query: 361 ILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTAV 420 ILNEKA NINQVV TITKVADQTNLLSLNAAIEAEKAGEYGRGF+VVATEIRRLADQTAV Sbjct: 361 ILNEKASNINQVVATITKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEIRRLADQTAV 420 Query: 421 ATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQI 480 ATYDIE MVKEIQSAVAAGVMGMDKFS++VRRGM DVQ G L+QII QVQ LAPRF + Sbjct: 421 ATYDIEQMVKEIQSAVAAGVMGMDKFSEEVRRGMLDVQNVGGHLTQIIQQVQQLAPRFSM 480 Query: 481 VNEGMQAQASSAEQINQALVQLSEAAQQTVESLQQSSQAIDELNVVSNELRNGVSRFKVT 540 VNEGMQ QA+ AEQI QAL QLSEAAQQT ESL+QS+QAID+L V+N LR GVSRFKVT Sbjct: 481 VNEGMQTQATGAEQITQALTQLSEAAQQTAESLRQSTQAIDDLTHVANSLRTGVSRFKVT 540 >ref|ZP_06840450.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. Ch1-1] gb|EFG72170.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. Ch1-1] Length = 541 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 321/540 (59%), Positives = 415/540 (76%) Query: 1 MKNWTIKQRILGSFGLILLLMALMAGISAVNLGHIEKGATALRDDSTPGLYYSTQINAAW 60 MK WTI+QRIL SFG++L++M MA ++ LG I++ A + + DS PGLY +T + AAW Sbjct: 1 MKQWTIRQRILCSFGIVLIVMLAMAIVAFQQLGGIDRDAKSQQQDSMPGLYNATAMRAAW 60 Query: 61 YENLLMTQQIIQIDANDAERQADLALLRRNAERLDRLQEDYDKTIFSDADRKLFEQFKET 120 +EN +TQ++I +DA+ + D A L+ + L ++ DY TIF D DR++F F++ Sbjct: 61 FENYSVTQRLIYVDADPDSVKRDTARLQETQQTLQKIINDYGATIFRDVDREVFNDFRQQ 120 Query: 121 RQKYRAVVSEVLKMDFSQRAPIDKIVNEQIRPQWRTGYQLTQRMVETNKGIADDAAQRIG 180 + +Y ++ + +L + + ++ N Q+ P W TG +++VE NKG AD +A+ I Sbjct: 121 QAQYLSIQASLLDALPASKDNAARVFNTQLTPLWETGRLTVRKLVENNKGYADQSAESIR 180 Query: 181 DAVNSAQFTLMSALMAALLVALVCGFFLMRAINEPLQKLMGLLDIMRSGDFSRRVELDRK 240 +V + + L+ L+ A ++A + G++L+R + P+ K++ ++D+MR+GD ++R++L+R Sbjct: 181 SSVETTRVVLLVMLLVAAVLATLAGYWLVRGVTTPMAKMLQVVDVMRTGDLTQRLQLNRT 240 Query: 241 DEFGVLGNGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEIG 300 DE G L GF+RM DELTALV QAQKS+ +V TSVTEIAAT+R+QQATA ET ATTTEIG Sbjct: 241 DEIGALEAGFNRMADELTALVGQAQKSAMQVTTSVTEIAATSREQQATANETVATTTEIG 300 Query: 301 ATSREIHATSRDLVRTMNEVSVVSEQTSALAGSGQAGLTRMGDTMQNVMDAAGSVSAKLA 360 ATSREI ATSRDL+R MNEVS V+ Q++ LAG+G AGL RM +TM+ VM+AAGSV+AKLA Sbjct: 301 ATSREIFATSRDLLRAMNEVSEVAGQSAVLAGTGHAGLARMEETMRLVMEAAGSVNAKLA 360 Query: 361 ILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTAV 420 ILNEKA NINQVV TITKVADQTNLLSLNAAIEAEKAGEYGRGF+VVATEIRRLADQTAV Sbjct: 361 ILNEKASNINQVVATITKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEIRRLADQTAV 420 Query: 421 ATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQI 480 ATYDIE MVKEIQSAVAAGVMGMDKFS++VRRGM DVQ G L++II QVQ LAPRF + Sbjct: 421 ATYDIEQMVKEIQSAVAAGVMGMDKFSEEVRRGMLDVQNVGGHLTEIIQQVQQLAPRFSM 480 Query: 481 VNEGMQAQASSAEQINQALVQLSEAAQQTVESLQQSSQAIDELNVVSNELRNGVSRFKVT 540 VN+GMQ QA+ AEQI QAL QLSEAAQQT ESL+QS+QAID+L V+N LR GVSRFKVT Sbjct: 481 VNDGMQTQATGAEQITQALTQLSEAAQQTAESLRQSTQAIDDLTHVANSLRTGVSRFKVT 540