BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3632.p (155 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776417.1| chemotaxis signal transduction protein [Herb... 170 6e-41 ref|YP_001351707.1| CheW purine-binding chemotaxis protein [Jant... 153 9e-36 ref|YP_346785.1| CheW protein [Pseudomonas fluorescens Pf0-1] >g... 138 2e-31 ref|YP_004352194.1| chemotaxis-like protein [Pseudomonas brassic... 135 2e-30 ref|YP_002870875.1| putative chemotaxis-like protein [Pseudomona... 130 5e-29 >ref|YP_003776417.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ64509.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 158 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 103/150 (68%), Positives = 113/150 (75%) Query: 1 MSQSLHLLFSLGEERYALPTAEVAMVLPLSPCKSLPGAPAWVAGLLPHGSGHVPVIDLSM 60 ++ L LLFSLG +RYALP AEVA+VLPL+PCK LPGAPAWVAGLLP+ HVPVIDLS Sbjct: 4 VTDPLFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQ 63 Query: 61 LALGHPAPARVSTRLVLVHYRHAQALPVLLGLILPQATDTLRLDPAHFTPAAVRNEGAPY 120 LG PA RVSTRLVLVH R P LLGLIL QATDTLR F A V ++ PY Sbjct: 64 RTLGRPAAQRVSTRLVLVHDRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDETPY 123 Query: 121 LGPVMPYQGGLLQRVEVGDLLDPATRALLY 150 LGPVMPYQGGLLQRV+V LLD ATRA+LY Sbjct: 124 LGPVMPYQGGLLQRVQVSALLDAATRAVLY 153 >ref|YP_001351707.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR90412.1| CheW purine-binding chemotaxis protein [Janthinobacterium sp. Marseille] Length = 161 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 83/149 (55%), Positives = 109/149 (73%) Query: 5 LHLLFSLGEERYALPTAEVAMVLPLSPCKSLPGAPAWVAGLLPHGSGHVPVIDLSMLALG 64 L LLF +G +RYAL A+VA+VLPL+ K +PG PAWV GL + HVPV+D+S+LA G Sbjct: 10 LFLLFQIGRDRYALEAAQVALVLPLARLKEVPGTPAWVLGLFNYDGQHVPVLDVSLLATG 69 Query: 65 HPAPARVSTRLVLVHYRHAQALPVLLGLILPQATDTLRLDPAHFTPAAVRNEGAPYLGPV 124 A +R+STRLVLVHY A P LLGL++ +ATDTLR DPA+F+ + + N+ A YLGPV Sbjct: 70 QAAASRLSTRLVLVHYTPAGQAPQLLGLVVEKATDTLRCDPANFSDSGLSNQDARYLGPV 129 Query: 125 MPYQGGLLQRVEVGDLLDPATRALLYPEV 153 + GL+QR+ V DLLD + +ALL+PEV Sbjct: 130 LRRDDGLIQRINVQDLLDASVQALLFPEV 158 >ref|YP_346785.1| CheW protein [Pseudomonas fluorescens Pf0-1] gb|ABA72796.1| putative chemotaxis-related protein [Pseudomonas fluorescens Pf0-1] Length = 178 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 86/153 (56%), Positives = 97/153 (63%), Gaps = 1/153 (0%) Query: 3 QSLHLLFSLGEERYALPTAEVAMVLPLSPCKSLPGAPAWVAGLLPHGSGHVPVIDLSMLA 62 Q+L LLF +G ERYAL EVA VLP P K + AP WVAG+ + VPVIDLS L Sbjct: 16 QALFLLFRIGSERYALRATEVAEVLPRLPLKPIARAPHWVAGVFAYRGTVVPVIDLSALT 75 Query: 63 LGHPAPARVSTRLVLVHYRHAQALPV-LLGLILPQATDTLRLDPAHFTPAAVRNEGAPYL 121 GHPA AR STRLVLVHYR + P LGLIL QATDTLR +P F + N APYL Sbjct: 76 FGHPAQARTSTRLVLVHYRAEDSQPAQWLGLILEQATDTLRCNPDEFQSYGLDNRQAPYL 135 Query: 122 GPVMPYQGGLLQRVEVGDLLDPATRALLYPEVP 154 GPV GL+Q V V DLLD + R LL+P P Sbjct: 136 GPVREDAQGLVQWVRVNDLLDESVRTLLFPTPP 168 >ref|YP_004352194.1| chemotaxis-like protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA67190.1| putative chemotaxis-related protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 178 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 84/153 (54%), Positives = 96/153 (62%), Gaps = 1/153 (0%) Query: 3 QSLHLLFSLGEERYALPTAEVAMVLPLSPCKSLPGAPAWVAGLLPHGSGHVPVIDLSMLA 62 QSL L+F +G ERYAL +V VLP P K + AP+WVAG+ VPVIDL L Sbjct: 16 QSLFLVFCIGNERYALQAIDVVEVLPRLPLKPIARAPSWVAGVFAWRGTVVPVIDLCALT 75 Query: 63 LGHPAPARVSTRLVLVHYR-HAQALPVLLGLILPQATDTLRLDPAHFTPAAVRNEGAPYL 121 G A AR STRLVLV Y+ AQ +LGLIL QATDT+R DPA F P + N APYL Sbjct: 76 FGQSAQARTSTRLVLVRYQGDAQQTGQVLGLILEQATDTVRCDPADFKPYGLDNRQAPYL 135 Query: 122 GPVMPYQGGLLQRVEVGDLLDPATRALLYPEVP 154 GPV GLLQ V V DLLD + RALL+P P Sbjct: 136 GPVREDAHGLLQWVRVNDLLDESVRALLFPAPP 168 >ref|YP_002870875.1| putative chemotaxis-like protein [Pseudomonas fluorescens SBW25] gb|AAO92334.1| WspB [Pseudomonas fluorescens] emb|CAY47479.1| putative chemotaxis-related protein [Pseudomonas fluorescens SBW25] Length = 170 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 81/149 (54%), Positives = 97/149 (65%), Gaps = 1/149 (0%) Query: 3 QSLHLLFSLGEERYALPTAEVAMVLPLSPCKSLPGAPAWVAGLLPHGSGHVPVIDLSMLA 62 ++L L+F +G+ERYAL EVA VLP P K + AP WVAG+ H VPVIDLS L Sbjct: 16 KALFLVFHIGQERYALKATEVAEVLPRLPLKPIAHAPLWVAGIFAHRGALVPVIDLSALT 75 Query: 63 LGHPAPARVSTRLVLVHYR-HAQALPVLLGLILPQATDTLRLDPAHFTPAAVRNEGAPYL 121 G+PA AR STRLVLV+Y+ A + LGLIL QATDTLR DPA F P + N APYL Sbjct: 76 FGNPAQARTSTRLVLVNYQPDAGSQARWLGLILEQATDTLRCDPAEFQPYGLANRQAPYL 135 Query: 122 GPVMPYQGGLLQRVEVGDLLDPATRALLY 150 GPV GL+Q + V DLL RA+L+ Sbjct: 136 GPVREDALGLMQWIGVNDLLTDDVRAVLF 164