BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3630.p         (145 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774577.1| transcription regulator protein [Herbaspiril...   252   1e-65
ref|YP_004754171.1| MarR family transcriptional regulator [Colli...   165   2e-39
ref|ZP_02189926.1| transcriptional regulator, MarR family protei...    97   5e-19
ref|YP_004235114.1| regulatory protein MarR [Acidovorax avenae s...    93   2e-17
ref|YP_004490074.1| MarR family transcriptional regulator [Delft...    92   2e-17

>ref|YP_003774577.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  252 bits (644), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 134/145 (92%), Positives = 139/145 (95%)

Query: 1   MSKDICTCAPLRRLTRRITIIYDHHLQDSELSITQYSLLSRIGRKGPIANIVLAQDMGMD 60
           MSKDICTCAPLRRLTRRIT++YDHHLQD ELSITQYSL+SRIGRKGPIANI LAQDMGMD
Sbjct: 1   MSKDICTCAPLRRLTRRITVLYDHHLQDCELSITQYSLISRIGRKGPIANITLAQDMGMD 60

Query: 61  RSTLSRTLKPLVAAGWIETVDLPDDALLDKRSFALQLSRSGRAKLEQARPYWRRAQDEID 120
           RSTLSR LKPL+AAGWIETVDLP DA LDKRSFALQLS+ GRAKLEQARPYWRRAQDEID
Sbjct: 61  RSTLSRALKPLMAAGWIETVDLPADAQLDKRSFALQLSQDGRAKLEQARPYWRRAQDEID 120

Query: 121 RLLGPDLARNFNDLIEDAYTRLQEA 145
           RLLGPDLARNFNDLIEDAYTRLQEA
Sbjct: 121 RLLGPDLARNFNDLIEDAYTRLQEA 145


>ref|YP_004754171.1| MarR family transcriptional regulator [Collimonas fungivorans
           Ter331]
 gb|AEK63348.1| transcriptional regulator, MarR family [Collimonas fungivorans
           Ter331]
          Length = 152

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/144 (54%), Positives = 106/144 (73%)

Query: 1   MSKDICTCAPLRRLTRRITIIYDHHLQDSELSITQYSLLSRIGRKGPIANIVLAQDMGMD 60
           M K+ C+C  LR+LTR++T IYDH+L   EL+I+QYSLL+RIG+ GPI  I LA +MGMD
Sbjct: 3   MMKNECSCTTLRQLTRKMTNIYDHYLAADELTISQYSLLARIGKYGPIGVIPLAHNMGMD 62

Query: 61  RSTLSRTLKPLVAAGWIETVDLPDDALLDKRSFALQLSRSGRAKLEQARPYWRRAQDEID 120
           RST+SRTLKPL+ AGWIETVDLP + L DKRSF ++LS  G  K +Q++P WR+AQD I+
Sbjct: 63  RSTMSRTLKPLIGAGWIETVDLPLEMLTDKRSFGVRLSAEGERKWKQSKPNWRKAQDVIN 122

Query: 121 RLLGPDLARNFNDLIEDAYTRLQE 144
            +LG         L++DA  + ++
Sbjct: 123 TILGDQTHHALMSLVDDANVKFEQ 146


>ref|ZP_02189926.1| transcriptional regulator, MarR family protein [alpha
           proteobacterium BAL199]
 gb|EDP63256.1| transcriptional regulator, MarR family protein [alpha
           proteobacterium BAL199]
          Length = 157

 Score = 97.4 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 59/132 (44%), Positives = 78/132 (59%), Gaps = 5/132 (3%)

Query: 6   CTCAPLRRLTRRITIIYDHHLQDSELSITQYSLLSRIGRKGPIANIVLAQDMGMDRSTLS 65
           CTCA LRR  RR+T IYD  L+ + L +TQYSLL+ + + G  +   LA+ M MDR+TL+
Sbjct: 23  CTCAALRRTARRMTQIYDDALKPTGLKLTQYSLLATLAQAGDPSITDLAERMMMDRTTLT 82

Query: 66  RTLKPLVAAGWIETVDLPDDALLDKRSFALQLSRSGRAKLEQARPYWRRAQDEIDRLLGP 125
           R L+PL +AGW+           DKRS  + L+  G   LE ARP WR+A+  I   LGP
Sbjct: 83  RNLRPLQSAGWVRL-----GKGEDKRSRMVVLTAEGEWALESARPIWRQAEKSIREKLGP 137

Query: 126 DLARNFNDLIED 137
           D  R    L+ D
Sbjct: 138 DGGRQLRRLLAD 149


>ref|YP_004235114.1| regulatory protein MarR [Acidovorax avenae subsp. avenae ATCC
           19860]
 gb|ADX46547.1| regulatory protein MarR [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 157

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 83/137 (60%), Gaps = 5/137 (3%)

Query: 6   CTCAPLRRLTRRITIIYDHHLQDSELSITQYSLLSRIGRKGPIANIVLAQDMGMDRSTLS 65
           CT   +R+L R + +IYD HL  +++ ITQY+LLS +    P+  + LA+ M MD STL+
Sbjct: 14  CTNNRVRQLMRSVGLIYDAHLHAADMRITQYTLLSHVLAASPVRPVDLARLMRMDASTLT 73

Query: 66  RTLKPLVAAGWIETVDLPDDALLDKRSFALQLSRSGRAKLEQARPYWRRAQDEIDRLLGP 125
           R LKPL+ AGW+           D+RS  + ++ +GRAK ++A+  W+ AQ E++  LGP
Sbjct: 74  RNLKPLMGAGWVRMGQGD-----DQRSRLVHITEAGRAKRDEAKRSWKAAQSELNARLGP 128

Query: 126 DLARNFNDLIEDAYTRL 142
           +     + LI++  + L
Sbjct: 129 ERVAALHVLIDECLSLL 145


>ref|YP_004490074.1| MarR family transcriptional regulator [Delftia sp. Cs1-4]
 gb|AEF91719.1| transcriptional regulator, MarR family [Delftia sp. Cs1-4]
          Length = 164

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/137 (38%), Positives = 82/137 (59%), Gaps = 5/137 (3%)

Query: 6   CTCAPLRRLTRRITIIYDHHLQDSELSITQYSLLSRIGRKGPIANIVLAQDMGMDRSTLS 65
           CT   +R+L R +  +YD HL ++ L ITQYSLLS +   GP+    LA+ M MD STL+
Sbjct: 14  CTNHRVRQLMRSVGQVYDAHLNETGLRITQYSLLSHVLAAGPVRPSDLARRMRMDASTLT 73

Query: 66  RTLKPLVAAGWIETVDLPDDALLDKRSFALQLSRSGRAKLEQARPYWRRAQDEIDRLLGP 125
           R LKPL+ AGW+           D+RS  + ++ +G+AK E+A+  W+ AQ+E++  +GP
Sbjct: 74  RNLKPLIDAGWVRMGQGE-----DQRSRLVHITDAGQAKREEAKQSWKTAQNELNARVGP 128

Query: 126 DLARNFNDLIEDAYTRL 142
           +     + LI++    L
Sbjct: 129 ERVAALHALIDECLVLL 145