BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3627.p         (356 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774579.1| serine proteinase [Herbaspirillum seropedica...   399   e-109

>ref|YP_003774579.1| serine proteinase [Herbaspirillum seropedicae SmR1]
 gb|ADJ62671.1| serine proteinase protein [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  399 bits (1025), Expect = e-109,   Method: Composition-based stats.
 Identities = 228/231 (98%), Positives = 230/231 (99%)

Query: 16  KGSEALLPTGVMLARFRSELQKHGYPLPGPKEAPLFQEKPDDATPSQAEQSLQVGVIVAQ 75
           KGSEALLPTGVMLARFRSELQKHGYPLPGPKEAPLFQEKPDDATPSQAEQSLQVGVIVAQ
Sbjct: 57  KGSEALLPTGVMLARFRSELQKHGYPLPGPKEAPLFQEKPDDATPSQAEQSLQVGVIVAQ 116

Query: 76  VLTNLCAKGNSSWTGEAYLRLEWQVFAPEQRKVIFKTVSEGVFQSRQASLEGAAPPIVAE 135
           VLTNLC KGN+SWTGEAYLRLEWQVFAP+QRKVIFKTVSEGVFQSRQASLEGAAPPIVAE
Sbjct: 117 VLTNLCLKGNASWTGEAYLRLEWQVFAPDQRKVIFKTVSEGVFQSRQASLEGAAPPIVAE 176

Query: 136 AFSVGVRNLLADPAFALALQTPYDRAAAAANASILPPSQPAAPGAGAGGAVNKPVPGLAV 195
           AFSVGVRNLLADPAFALALQTPYDRAAAAANASILPPSQPAAPGAGAGGAVNKPVPGLAV
Sbjct: 177 AFSVGVRNLLADPAFALALQTPYDRAAAAANASILPPSQPAAPGAGAGGAVNKPVPGLAV 236

Query: 196 SIDNLPAAQPGGEMSKVIGQLRQGVVTVLTEGRSGTGFYIGQSGWLLSNQH 246
           SIDNLPAAQPGGEMSKVIGQLRQGVVTVLTEGRSGTGFYIGQSGWLLSNQH
Sbjct: 237 SIDNLPAAQPGGEMSKVIGQLRQGVVTVLTEGRSGTGFYIGQSGWLLSNQH 287