BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3625.p (368 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774580.1| LacI family transcription regulator protein ... 597 e-169 ref|YP_004751404.1| putative transcription regulator transcripti... 443 e-122 ref|YP_001020165.1| LacI family transcription regulator [Methyli... 409 e-112 ref|YP_550225.1| LacI family transcription regulator [Polaromona... 399 e-109 ref|YP_551311.1| LacI family transcription regulator [Polaromona... 375 e-102 >ref|YP_003774580.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62672.1| LacI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 365 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 331/368 (89%), Positives = 345/368 (93%), Gaps = 3/368 (0%) Query: 1 MSEKRMPPPDSPMQPTSAERDDDSAEPRRRAARKSAGGITLRDVAQLAGVAPITASRALN 60 MSE R+ S P ++ +D D+A PRRR +RKSAGG+TLRDVAQLAGVAPITASRALN Sbjct: 1 MSENRL---SSSEFPAASHQDGDAASPRRRGSRKSAGGVTLRDVAQLAGVAPITASRALN 57 Query: 61 TPSAVSPKVLQKVREAVEKTGYVPNLLAGGLASNKSRLVAVVVPTVIGPVFQEIVHTLTE 120 TPSAVSPKVLQKVREAVEKTGYVPNLLAGGLASNKSRLVAVVVPTVIGPVFQEIVHTLTE Sbjct: 58 TPSAVSPKVLQKVREAVEKTGYVPNLLAGGLASNKSRLVAVVVPTVIGPVFQEIVHTLTE 117 Query: 121 TLAAAGYQVMLGQSGYENSREDALLEAIIGRRPDGVVLTGIMRSAEARKRLLASGIPVVE 180 TLAAAGYQVMLGQSGYENSREDALLEAIIGRRPDGVVLTGIMRSAEARKRLLASGIPVVE Sbjct: 118 TLAAAGYQVMLGQSGYENSREDALLEAIIGRRPDGVVLTGIMRSAEARKRLLASGIPVVE 177 Query: 181 TWDLTPTPIDMLVGFSHEAIGHEVARYLHARGRRKVAVVGGRDERSQRRMNAFAQECAAL 240 TWDLTPTPIDMLVGFSHEAIG EVARYLH RGR+KVAVVGGRDERSQRRMNAFAQEC AL Sbjct: 178 TWDLTPTPIDMLVGFSHEAIGREVARYLHQRGRKKVAVVGGRDERSQRRMNAFAQECVAL 237 Query: 241 GMQQGRGEVPMYHVVAPTTLGQGRQGLAELLQAHPDLDAIFCSSDLLALGVMIEAQSRGI 300 GM +GR +PM+HV APTTLGQGRQGLAELLQA PDLDAIFCSSDLLALGVMIEAQSRGI Sbjct: 238 GMHEGRAPLPMHHVTAPTTLGQGRQGLAELLQAQPDLDAIFCSSDLLALGVMIEAQSRGI 297 Query: 301 AIPGQLAVVGFGDLEFSRDLQPRLTTVRIDGTGIGQRAARFIIDRAAGIEVAERIIDVGF 360 AIP QLAVVGFGDLEFSRDLQPRLTTVRIDGTGIGQRAARFIIDRAAGIEVAER++DVGF Sbjct: 298 AIPEQLAVVGFGDLEFSRDLQPRLTTVRIDGTGIGQRAARFIIDRAAGIEVAERVVDVGF 357 Query: 361 SIIERESA 368 SII R+SA Sbjct: 358 SIIARDSA 365 >ref|YP_004751404.1| putative transcription regulator transcription regulator protein [Collimonas fungivorans Ter331] gb|AEK60581.1| putative transcription regulator transcription regulator protein [Collimonas fungivorans Ter331] Length = 361 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 250/344 (72%), Positives = 282/344 (81%), Gaps = 4/344 (1%) Query: 28 RRRAAR---KSAGGITLRDVAQLAGVAPITASRALNTPSAVSPKVLQKVREAVEKTGYVP 84 RR+ R + AGG TLRDVA+LAGVAPITASRALNTP AVS KVLQKV+ AV +TGYVP Sbjct: 17 RRKGGRQGSRKAGGFTLRDVAKLAGVAPITASRALNTPDAVSAKVLQKVQAAVLQTGYVP 76 Query: 85 NLLAGGLASNKSRLVAVVVPTVIGPVFQEIVHTLTETLAAAGYQVMLGQSGYENSREDAL 144 NLLAG LAS KSRLVA VVPT+ GP+F + V LT+TLA AGYQVMLGQSGYENSREDAL Sbjct: 77 NLLAGALASQKSRLVAAVVPTLSGPMFLQTVEALTDTLAGAGYQVMLGQSGYENSREDAL 136 Query: 145 LEAIIGRRPDGVVLTGIMRSAEARKRLLASGIPVVETWDLTPTPIDMLVGFSHEAIGHEV 204 L+AIIGRRPDG+VLTGI RS +AR+RLLASGIPVVETWDLTPTP+DMLVGFSHE IG V Sbjct: 137 LDAIIGRRPDGIVLTGITRSPQARRRLLASGIPVVETWDLTPTPVDMLVGFSHEKIGAAV 196 Query: 205 ARYLHARGRRKVAVVGGRDERSQRRMNAFAQECAALGMQQGR-GEVPMYHVVAPTTLGQG 263 A+YLH++G+R+VA + G DERS+RR AF++ LGM + + EVP V APTTLG G Sbjct: 197 AQYLHSKGKRRVAAISGDDERSRRRATAFSEAAVRLGMARPQESEVPACLVTAPTTLGNG 256 Query: 264 RQGLAELLQAHPDLDAIFCSSDLLALGVMIEAQSRGIAIPGQLAVVGFGDLEFSRDLQPR 323 R GL ELLQ PD+DA+FCSSDLLALGVMIEAQ+ IAIPGQLAV+G GDL FSRDL P Sbjct: 257 RSGLRELLQRAPDIDAVFCSSDLLALGVMIEAQASAIAIPGQLAVIGLGDLSFSRDLHPP 316 Query: 324 LTTVRIDGTGIGQRAARFIIDRAAGIEVAERIIDVGFSIIERES 367 LTTVRIDGT IG AARFIIDR+ G VAE I D+GF+IIER S Sbjct: 317 LTTVRIDGTAIGSTAARFIIDRSEGKSVAEPICDLGFTIIERAS 360 >ref|YP_001020165.1| LacI family transcription regulator [Methylibium petroleiphilum PM1] gb|ABM93930.1| transcriptional regulator, LacI family [Methylibium petroleiphilum PM1] Length = 347 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 233/346 (67%), Positives = 272/346 (78%), Gaps = 3/346 (0%) Query: 23 DSAEPRRRAARKSAGGITLRDVAQLAGVAPITASRALNTPSAVSPKVLQKVREAVEKTGY 82 D+ PRR + GGITL DVA+LAGV+PITASRALNTP V+P L +VREAV +TGY Sbjct: 5 DATAPRRS---RRGGGITLGDVARLAGVSPITASRALNTPDQVAPDKLARVREAVARTGY 61 Query: 83 VPNLLAGGLASNKSRLVAVVVPTVIGPVFQEIVHTLTETLAAAGYQVMLGQSGYENSRED 142 VPN LAGGLAS +SRLVA VVPT+ GPVF E+V +LT LA AGYQ+MLGQSGY SRED Sbjct: 62 VPNRLAGGLASARSRLVAAVVPTIAGPVFMEMVQSLTSALADAGYQLMLGQSGYTESRED 121 Query: 143 ALLEAIIGRRPDGVVLTGIMRSAEARKRLLASGIPVVETWDLTPTPIDMLVGFSHEAIGH 202 ALLEAIIGRRPDG+VLTGI+ S E R+RLLASGIPVVETWDLTPTPIDMLVGFSH Sbjct: 122 ALLEAIIGRRPDGIVLTGILHSPEGRRRLLASGIPVVETWDLTPTPIDMLVGFSHAEAAA 181 Query: 203 EVARYLHARGRRKVAVVGGRDERSQRRMNAFAQECAALGMQQGRGEVPMYHVVAPTTLGQ 262 VAR+LHA+GRR+ A++ DER+ RR F E LG+ + E+P V APTTLG Sbjct: 182 AVARHLHAKGRRRPALLSADDERALRRNRGFVDEALRLGLVRDAAEIPALRVPAPTTLGS 241 Query: 263 GRQGLAELLQAHPDLDAIFCSSDLLALGVMIEAQSRGIAIPGQLAVVGFGDLEFSRDLQP 322 GR GLA LL P++DA+FCSSD+LALGV++EA +RGIA+P QLAVVGFGDL F+ D QP Sbjct: 242 GRSGLARLLAERPEVDAVFCSSDMLALGVLVEAAARGIAVPQQLAVVGFGDLGFAADTQP 301 Query: 323 RLTTVRIDGTGIGQRAARFIIDRAAGIEVAERIIDVGFSIIERESA 368 L+TVRIDGTGIGQRAARFI+DRA G V E+I+DVGF +IER S+ Sbjct: 302 ALSTVRIDGTGIGQRAARFIVDRADGRTVGEKIVDVGFRVIERGSS 347 >ref|YP_550225.1| LacI family transcription regulator [Polaromonas sp. JS666] gb|ABE45327.1| transcriptional regulator, LacI family [Polaromonas sp. JS666] Length = 347 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 223/332 (67%), Positives = 268/332 (80%), Gaps = 4/332 (1%) Query: 36 AGGITLRDVAQLAGVAPITASRALNTPSAVSPKVLQKVREAVEKTGYVPNLLAGGLASNK 95 +G +TL DVA+LAGVAPITASRALNTP+ VS +VL+KV +AV++TGYVPN LAGGLAS++ Sbjct: 19 SGAVTLHDVAKLAGVAPITASRALNTPTQVSAEVLKKVTDAVQRTGYVPNRLAGGLASSR 78 Query: 96 SRLVAVVVPTVIGPVFQEIVHTLTETLAAAGYQVMLGQSGYENSREDALLEAIIGRRPDG 155 SRLVA VVPT+ GPVF E V LT+ LA GYQ+MLGQSGY +SREDALLEAIIGRRPDG Sbjct: 79 SRLVAAVVPTLNGPVFLETVQALTDALAEQGYQLMLGQSGYVDSREDALLEAIIGRRPDG 138 Query: 156 VVLTGIMRSAEARKRLLASGIPVVETWDLTPTPIDMLVGFSHEAIGHEVARYLHARGRRK 215 +VLTGIM S E RKRLLA+GIPVVETWDLTPTP+DMLVGFSH +G V +L+ARGRR+ Sbjct: 139 IVLTGIMHSPEGRKRLLAAGIPVVETWDLTPTPLDMLVGFSHVDVGRAVVDFLYARGRRR 198 Query: 216 VAVVGGRDERSQRRMNAFAQECAALGMQQGRGEVPMYHVVAPTTLGQGRQGLAELLQAHP 275 +A+V G DERS RR AF A G+ EV M V APTT GR LAEL++ Sbjct: 199 LAIVAGDDERSTRRHQAFQAAARAAGLP----EVRMVTVPAPTTAKSGRSALAELMRDAG 254 Query: 276 DLDAIFCSSDLLALGVMIEAQSRGIAIPGQLAVVGFGDLEFSRDLQPRLTTVRIDGTGIG 335 D+DA+FCSSDLLALGV+++AQ+ GIA+PGQLA+VGFGDLEF+ DL P LTTVRIDGT IG Sbjct: 255 DIDAVFCSSDLLALGVLMQAQASGIAVPGQLAIVGFGDLEFAADLNPALTTVRIDGTAIG 314 Query: 336 QRAARFIIDRAAGIEVAERIIDVGFSIIERES 367 ++AARFI++RA G V R++D+GF+I+ER S Sbjct: 315 RQAARFIVERAEGRPVEPRVVDIGFTIVERGS 346 >ref|YP_551311.1| LacI family transcription regulator [Polaromonas sp. JS666] gb|ABE46413.1| transcriptional regulator, LacI family [Polaromonas sp. JS666] Length = 343 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 206/346 (59%), Positives = 258/346 (74%), Gaps = 4/346 (1%) Query: 23 DSAEPRRRAARKSAGGITLRDVAQLAGVAPITASRALNTPSAVSPKVLQKVREAVEKTGY 82 DS + RAAR GGITL DVA+LAGV+ IT SRALNTP+AVSP L++VR A+ ++GY Sbjct: 2 DSLKKPGRAARPGTGGITLNDVAKLAGVSAITVSRALNTPAAVSPDTLERVRGAIARSGY 61 Query: 83 VPNLLAGGLASNKSRLVAVVVPTVIGPVFQEIVHTLTETLAAAGYQVMLGQSGYENSRED 142 VPNL+AGGLASN+SRLVA +VPT+ GPVF E + LT+ LA AG Q+MLGQSGY +RED Sbjct: 62 VPNLVAGGLASNRSRLVAALVPTIAGPVFLETIQALTDALAEAGCQLMLGQSGYGGARED 121 Query: 143 ALLEAIIGRRPDGVVLTGIMRSAEARKRLLASGIPVVETWDLTPTPIDMLVGFSHEAIGH 202 ALL+AIIGRRPDG+VL GIM SAE R+RLLASGIPVVETWD+TPTP+DM+VGFSHE +G Sbjct: 122 ALLDAIIGRRPDGIVLIGIMHSAEGRRRLLASGIPVVETWDITPTPLDMIVGFSHEKVGA 181 Query: 203 EVARYLHARGRRKVAVVGGRDERSQRRMNAFAQECAALGMQQGRGEVPMYHVVAPTTLGQ 262 VA YLH RG + +V DER+ RR F Q A LG+ +P V +P++LG Sbjct: 182 AVADYLHGRGFHRPGIVSASDERATRRRVGFEQRFAELGVPG----IPACVVPSPSSLGN 237 Query: 263 GRQGLAELLQAHPDLDAIFCSSDLLALGVMIEAQSRGIAIPGQLAVVGFGDLEFSRDLQP 322 GR G AEL +HP LD +FCSSD++A GV+ EA + G+ +P +AV+GFGDL F+ P Sbjct: 238 GRAGFAELRASHPGLDVVFCSSDVIAHGVITEAHATGLRVPEDIAVMGFGDLPFAAFTYP 297 Query: 323 RLTTVRIDGTGIGQRAARFIIDRAAGIEVAERIIDVGFSIIERESA 368 +L+TV IDGT IG++AA FI+DR A +V + D+GFSII+R SA Sbjct: 298 QLSTVSIDGTAIGRQAANFILDRVANRDVGPPVRDIGFSIIQRGSA 343