BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3617.p         (114 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774592.1| biopolymer transport ExbB-like transmembrane...   213   6e-54
ref|YP_004751873.1| putative biopolymer transport exbB-like prot...   192   2e-47
ref|YP_001354271.1| biopolymer transport protein ExbB [Janthinob...   189   9e-47
ref|ZP_08275302.1| Ferric siderophore transport system, biopolym...   187   4e-46
ref|YP_001100741.1| putative biopolymer transport exbB-like prot...   186   8e-46

>ref|YP_003774592.1| biopolymer transport ExbB-like transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ62684.1| biopolymer transport ExbB-like transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score =  213 bits (543), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 113/114 (99%), Positives = 113/114 (99%)

Query: 1   MKEAIEEAGQAAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAAGTNPAQLA 60
           MKEAIEEAGQAAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAAGTNPAQLA
Sbjct: 88  MKEAIEEAGQAAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAAGTNPAQLA 147

Query: 61  HGISIALYNTGFGLAIAMPALVFYRHFRAQVDGFVVDMEQQAVKFVDIVHDVRR 114
           HGISIALYNTGFGLAIAMPALVFYRHFRA VDGFVVDMEQQAVKFVDIVHDVRR
Sbjct: 148 HGISIALYNTGFGLAIAMPALVFYRHFRALVDGFVVDMEQQAVKFVDIVHDVRR 201


>ref|YP_004751873.1| putative biopolymer transport exbB-like protein [Collimonas
           fungivorans Ter331]
 gb|AEK61050.1| Putative biopolymer transport exbB-like protein [Collimonas
           fungivorans Ter331]
          Length = 222

 Score =  192 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/114 (85%), Positives = 103/114 (90%)

Query: 1   MKEAIEEAGQAAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAAGTNPAQLA 60
           MKE+IEEAGQA AH LERFLTTLGTIASLAPLMGLFGTVVGMIEIF + N AG +PAQL 
Sbjct: 109 MKESIEEAGQATAHELERFLTTLGTIASLAPLMGLFGTVVGMIEIFGATNGAGADPAQLG 168

Query: 61  HGISIALYNTGFGLAIAMPALVFYRHFRAQVDGFVVDMEQQAVKFVDIVHDVRR 114
           HGIS+ALYNTGFGLAIAMPAL+FYRHFRA VDGFVVDMEQQAVKFVD VH  R+
Sbjct: 169 HGISVALYNTGFGLAIAMPALIFYRHFRALVDGFVVDMEQQAVKFVDTVHGARK 222


>ref|YP_001354271.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille]
 gb|ABR90229.1| biopolymer transport protein ExbB [Janthinobacterium sp. Marseille]
          Length = 203

 Score =  189 bits (481), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 98/116 (84%), Positives = 105/116 (90%), Gaps = 2/116 (1%)

Query: 1   MKEAIEEAGQAAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAAGT--NPAQ 58
           MKE+IEEAG+  AH LERFLTTLGTIA+LAPLMGLFGTVVGMIEIF SQNA GT  NPAQ
Sbjct: 88  MKESIEEAGRGTAHTLERFLTTLGTIATLAPLMGLFGTVVGMIEIFGSQNATGTGANPAQ 147

Query: 59  LAHGISIALYNTGFGLAIAMPALVFYRHFRAQVDGFVVDMEQQAVKFVDIVHDVRR 114
           LAHGISIALYNTGFGLAIAMP+LVFYRHFRA VD F++DMEQQAVKFVDIVH  R+
Sbjct: 148 LAHGISIALYNTGFGLAIAMPSLVFYRHFRALVDSFIIDMEQQAVKFVDIVHGARK 203


>ref|ZP_08275302.1| Ferric siderophore transport system, biopolymer transport protein
           ExbB [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF31231.1| Ferric siderophore transport system, biopolymer transport protein
           ExbB [Oxalobacteraceae bacterium IMCC9480]
          Length = 201

 Score =  187 bits (476), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 97/114 (85%), Positives = 104/114 (91%)

Query: 1   MKEAIEEAGQAAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAAGTNPAQLA 60
           MKE+IEEAG A+AH LERFLTTLGTIA+LAPLMGLFGTVVGMIEIF +QNA G NPAQLA
Sbjct: 88  MKESIEEAGMASAHELERFLTTLGTIATLAPLMGLFGTVVGMIEIFGAQNATGANPAQLA 147

Query: 61  HGISIALYNTGFGLAIAMPALVFYRHFRAQVDGFVVDMEQQAVKFVDIVHDVRR 114
           HGIS+ALYNTGFGLAIAMPALVFYRHFRA VD FVVDMEQQAV+FVD VH  R+
Sbjct: 148 HGISVALYNTGFGLAIAMPALVFYRHFRALVDSFVVDMEQQAVRFVDTVHGSRK 201


>ref|YP_001100741.1| putative biopolymer transport exbB-like protein [Herminiimonas
           arsenicoxydans]
 emb|CAL62620.1| putative biopolymer transport protein ExbB-like [Herminiimonas
           arsenicoxydans]
          Length = 203

 Score =  186 bits (473), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 96/116 (82%), Positives = 103/116 (88%), Gaps = 2/116 (1%)

Query: 1   MKEAIEEAGQAAAHRLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAAGT--NPAQ 58
           MKE+IEEAG+  AH LERFLTTLGTIA+LAPLMGLFGTVVGMIEIF SQNA GT  NP Q
Sbjct: 88  MKESIEEAGRGTAHELERFLTTLGTIATLAPLMGLFGTVVGMIEIFGSQNATGTGANPTQ 147

Query: 59  LAHGISIALYNTGFGLAIAMPALVFYRHFRAQVDGFVVDMEQQAVKFVDIVHDVRR 114
           LAHGISIALYNTGFGLAIAMP+LVFYRHFRA VD F++DMEQQAVKFVD VH  R+
Sbjct: 148 LAHGISIALYNTGFGLAIAMPSLVFYRHFRALVDSFIIDMEQQAVKFVDTVHGARK 203