BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3616.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774593.1| biopolymer transport ExbD-related transmembr...   236   8e-61
ref|YP_004751874.1| biopolymer transport protein ExbD/TolR [Coll...   185   2e-45
ref|ZP_08275301.1| Biopolymer transport protein ExbD/TolR [Oxalo...   185   2e-45
ref|YP_001354270.1| biopolymer transport protein ExbD [Janthinob...   177   6e-43
ref|YP_001100740.1| putative iopolymer transport ExbD2 protein [...   169   1e-40

>ref|YP_003774593.1| biopolymer transport ExbD-related transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ62685.1| biopolymer transport ExbD-related transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score =  236 bits (602), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 129/142 (90%), Positives = 138/142 (97%)

Query: 1   MNFRKGRPREDLEINLIPFIDVLLVIVIFLMVTTTYSKFTALQVTLPTADAQKALEQPFE 60
           MNFRKGRPREDLEINLIPFIDVLLVIVIFLMVTTTYSKFTALQ+TLPTADA KALEQPFE
Sbjct: 1   MNFRKGRPREDLEINLIPFIDVLLVIVIFLMVTTTYSKFTALQLTLPTADAPKALEQPFE 60

Query: 61  INIAIDANGRYAINNKRIAARDAQGLSEEMQAAVRSSGSKADPVIIINADALATHQTVVN 120
           +NIA+DANGRYA+NNKRI+ARDAQGLSEEMQA VR+S SK DPVIIINADALATHQTVVN
Sbjct: 61  LNIAVDANGRYALNNKRISARDAQGLSEEMQAVVRASASKLDPVIIINADALATHQTVVN 120

Query: 121 VMEAARMAGYPKLTFAAQSSSK 142
           V+EAARMAGYPK+TFAAQ+SSK
Sbjct: 121 VLEAARMAGYPKVTFAAQASSK 142


>ref|YP_004751874.1| biopolymer transport protein ExbD/TolR [Collimonas fungivorans
           Ter331]
 gb|AEK61051.1| Biopolymer transport protein ExbD/TolR [Collimonas fungivorans
           Ter331]
          Length = 143

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 95/140 (67%), Positives = 124/140 (88%)

Query: 1   MNFRKGRPREDLEINLIPFIDVLLVIVIFLMVTTTYSKFTALQVTLPTADAQKALEQPFE 60
           MNFRKG+ R+D EINLIPFIDVLLVIVIFLMVTT+YSKFTALQ+TLPTADA KA+ QP E
Sbjct: 1   MNFRKGKGRDDPEINLIPFIDVLLVIVIFLMVTTSYSKFTALQITLPTADADKAMVQPQE 60

Query: 61  INIAIDANGRYAINNKRIAARDAQGLSEEMQAAVRSSGSKADPVIIINADALATHQTVVN 120
           IN+A+   G+YA+NN +++++DA  L+ +++ AV++ G+K DPV+IINADA+ATHQTV+N
Sbjct: 61  INVAVSPQGQYAVNNVQVSSKDAASLALDLKNAVQADGAKGDPVVIINADAMATHQTVIN 120

Query: 121 VMEAARMAGYPKLTFAAQSS 140
           V+EAAR+AG+ K+TFAAQ+S
Sbjct: 121 VLEAARLAGFDKITFAAQTS 140


>ref|ZP_08275301.1| Biopolymer transport protein ExbD/TolR [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31230.1| Biopolymer transport protein ExbD/TolR [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 145

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/143 (65%), Positives = 123/143 (86%), Gaps = 2/143 (1%)

Query: 1   MNFRKGRPREDLEINLIPFIDVLLVIVIFLMVTTTYSKFTALQVTLPTADAQKALEQPFE 60
           MNFR+ + RED EINLIPFIDVLLVI+IFLMV+TTYSKFT LQ+TLPTADA+KA+E+PFE
Sbjct: 1   MNFRRRKGREDPEINLIPFIDVLLVILIFLMVSTTYSKFTELQITLPTADAEKAVERPFE 60

Query: 61  INIAIDANGRYAINNKRIAARDAQGLSEEMQAAVRSSGS--KADPVIIINADALATHQTV 118
           IN+ +D+ GRYA+NN +++ RD +GL++EM+ A    GS  + DP++IINAD  ATHQ+V
Sbjct: 61  INVMVDSQGRYAVNNVQVSFRDVRGLADEMRNAASGKGSELRKDPIVIINADGTATHQSV 120

Query: 119 VNVMEAARMAGYPKLTFAAQSSS 141
           +NV+EAAR+AG+ ++TFAAQS+S
Sbjct: 121 INVLEAARLAGFERVTFAAQSAS 143


>ref|YP_001354270.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille]
 gb|ABR90384.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille]
          Length = 144

 Score =  177 bits (448), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 100/143 (69%), Positives = 124/143 (86%), Gaps = 1/143 (0%)

Query: 1   MNFRKGRPREDLEINLIPFIDVLLVIVIFLMVTTTYSKFTALQVTLPTADAQKALEQPFE 60
           MNFRKG+ RED EINLI FIDVLLVI+IFLMV+T+YSKFTALQ+TLPTADA+KA+++PFE
Sbjct: 1   MNFRKGQGREDPEINLIAFIDVLLVILIFLMVSTSYSKFTALQITLPTADAEKAMDRPFE 60

Query: 61  INIAIDANGRYAINNKRIAARDAQGLSEEMQAAVRSSG-SKADPVIIINADALATHQTVV 119
           IN+ +D  GRY+INN RIA ++ + L+ E+ AAV +SG +  DPVIII ADA ATHQTV+
Sbjct: 61  INVGVDTQGRYSINNTRIAVQNPEALAAELTAAVAASGKTNTDPVIIIAADATATHQTVI 120

Query: 120 NVMEAARMAGYPKLTFAAQSSSK 142
           NV+EAAR+AGYPK+TFAAQ+S K
Sbjct: 121 NVLEAARIAGYPKVTFAAQTSGK 143


>ref|YP_001100740.1| putative iopolymer transport ExbD2 protein [Herminiimonas
           arsenicoxydans]
 emb|CAL62619.1| Biopolymer transport protein [Herminiimonas arsenicoxydans]
          Length = 144

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 97/143 (67%), Positives = 123/143 (86%), Gaps = 1/143 (0%)

Query: 1   MNFRKGRPREDLEINLIPFIDVLLVIVIFLMVTTTYSKFTALQVTLPTADAQKALEQPFE 60
           MNFRKG+ RED EINLI FIDVLLVI+IFLMV+T+YSKFTALQ+TLPTADA+KA+E+PFE
Sbjct: 1   MNFRKGQGREDPEINLIAFIDVLLVILIFLMVSTSYSKFTALQITLPTADAEKAMERPFE 60

Query: 61  INIAIDANGRYAINNKRIAARDAQGLSEEMQAAVRSSG-SKADPVIIINADALATHQTVV 119
           IN+ +DA GRYAINN R+A ++ + L+EE+ AA  +SG +  DPV+II A+A ATHQ+V+
Sbjct: 61  INVIVDAQGRYAINNTRVAVQNPEALAEELTAAATASGKANVDPVVIIAAEATATHQSVI 120

Query: 120 NVMEAARMAGYPKLTFAAQSSSK 142
           NV+EAAR+AGY K+TFAAQ+  K
Sbjct: 121 NVLEAARIAGYSKVTFAAQAGGK 143