BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3613.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774595.1| 3-deoxy-manno-octulosonate cytidylyltransfer... 451 e-125 ref|YP_001100737.1| CTP:CMP-3-deoxy-D-manno-octulosonate transfe... 353 1e-95 ref|YP_001354267.1| 3-deoxy-manno-octulosonate cytidylyltransfer... 337 9e-91 ref|YP_004751877.1| 3-deoxy-manno-octulosonate cytidylyltransfer... 330 2e-88 ref|ZP_08275298.1| 3-deoxy-manno-octulosonate cytidylyltransfera... 320 2e-85 >ref|YP_003774595.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ62687.1| 3-deoxy-manno-octulosonate cytidylyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 248/271 (91%), Positives = 261/271 (96%) Query: 1 MTFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAALSGATRIIVATDHHDIHAACEQ 60 M+FTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAA SGA RIIVATDHHDIHAAC+ Sbjct: 1 MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAAQSGAARIIVATDHHDIHAACQA 60 Query: 61 HGIEVAMTRADHPSGTDRIAEVAAALGLTEDEVVVNVQGDEPLIDPGLIAATAAHIKDGV 120 HG+EVAMTRADHPSGTDRIAEVAAAL L ED VVVNVQGDEPLIDPGLIAATAAHIK GV Sbjct: 61 HGVEVAMTRADHPSGTDRIAEVAAALDLAEDAVVVNVQGDEPLIDPGLIAATAAHIKPGV 120 Query: 121 PMATAAHAIGTAEDAFNPNVVKVVLNKDGCAMYFSRATIPWHRDAFAKSRESLPDASGPD 180 PMATAAHAI +A DAFNPNVVKVVLNK+GCAMYFSRATIPWHRDAFA+SRE LPDASGPD Sbjct: 121 PMATAAHAIESAADAFNPNVVKVVLNKEGCAMYFSRATIPWHRDAFAQSREVLPDASGPD 180 Query: 181 HSNEYVPLRHIGLYAYSNRFLQLYPTLAPAPLERIEALEQLRVLWHGHAIAVHVTSMVPE 240 H+NEYVPLRHIGLYAYSNRFLQLYPTL+P+P+ERIEALEQLRVLWHGHAIAVHVTS++PE Sbjct: 181 HANEYVPLRHIGLYAYSNRFLQLYPTLSPSPVERIEALEQLRVLWHGHAIAVHVTSLLPE 240 Query: 241 AGVDTPEDLLRVRKHFEAPPDSPLVQTISAL 271 AGVDTPEDLLRVRKHFEAPPDSPLVQTIS+L Sbjct: 241 AGVDTPEDLLRVRKHFEAPPDSPLVQTISSL 271 >ref|YP_001100737.1| CTP:CMP-3-deoxy-D-manno-octulosonate transferase [Herminiimonas arsenicoxydans] sp|A4G7X9|KDSB_HERAR RecName: Full=3-deoxy-manno-octulosonate cytidylyltransferase; AltName: Full=CMP-2-keto-3-deoxyoctulosonic acid synthase; Short=CKS; Short=CMP-KDO synthase emb|CAL62616.1| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) (CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CKS) [Herminiimonas arsenicoxydans] Length = 250 Score = 353 bits (906), Expect = 1e-95, Method: Composition-based stats. Identities = 194/256 (75%), Positives = 209/256 (81%), Gaps = 8/256 (3%) Query: 1 MTFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAALSGATRIIVATDHHDIHAACEQ 60 M+FTVIIPARLASTRLPNKPLADLGGKPMIVRVAERA SGA+R+IVATDH DI AAC Q Sbjct: 1 MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAMESGASRVIVATDHADIFAACAQ 60 Query: 61 HGIEVAMTRADHPSGTDRIAEVAAALGLTEDEVVVNVQGDEPLIDPGLIAATAAHIKDGV 120 + + V MTR DHPSGTDRIAEVAA LGL++D V+VNVQGDEPLIDP LIAATA I V Sbjct: 61 NNVAVQMTRTDHPSGTDRIAEVAAVLGLSDDAVIVNVQGDEPLIDPSLIAATATLISREV 120 Query: 121 PMATAAHAIGTAEDAFNPNVVKVVLNKDGCAMYFSRATIPWHRDAFAKSRESLPDASGPD 180 PMATAAH I DAFNPNVVKVVL+K G A+YFSRATIPWHRD FA+SRE LP A Sbjct: 121 PMATAAHTIDDIADAFNPNVVKVVLDKQGRALYFSRATIPWHRDGFAQSREQLPTA---- 176 Query: 181 HSNEYVPLRHIGLYAYSNRFLQLYPTLAPAPLERIEALEQLRVLWHGHAIAVHVTSMVPE 240 Y PLRHIGLYAY N FLQ YP LA +PLE+IEALEQLRVLWHG IAVHVT P Sbjct: 177 ----YAPLRHIGLYAYRNSFLQAYPQLAVSPLEQIEALEQLRVLWHGVPIAVHVTPHAPA 232 Query: 241 AGVDTPEDLLRVRKHF 256 AGVDTPEDLLRVR++F Sbjct: 233 AGVDTPEDLLRVRRYF 248 >ref|YP_001354267.1| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [Janthinobacterium sp. Marseille] sp|A6T170|KDSB_JANMA RecName: Full=3-deoxy-manno-octulosonate cytidylyltransferase; AltName: Full=CMP-2-keto-3-deoxyoctulosonic acid synthase; Short=CKS; Short=CMP-KDO synthase gb|ABR88825.1| 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [Janthinobacterium sp. Marseille] Length = 250 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 186/256 (72%), Positives = 205/256 (80%), Gaps = 8/256 (3%) Query: 1 MTFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAALSGATRIIVATDHHDIHAACEQ 60 M+FTVIIPARLASTRLPNKPLADLGGKPMIVRVAERA SGA ++IVATDH DI AAC Q Sbjct: 1 MSFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAMQSGAAQVIVATDHADIFAACVQ 60 Query: 61 HGIEVAMTRADHPSGTDRIAEVAAALGLTEDEVVVNVQGDEPLIDPGLIAATAAHIKDGV 120 H + V MTRADHPSGTDRIAEVAA +GL ++ VVVNVQGDEPLIDP LIAATA I V Sbjct: 61 HKVAVQMTRADHPSGTDRIAEVAALIGLPDEAVVVNVQGDEPLIDPSLIAATATLISRDV 120 Query: 121 PMATAAHAIGTAEDAFNPNVVKVVLNKDGCAMYFSRATIPWHRDAFAKSRESLPDASGPD 180 PMATAAHAI E+ FNPNVVKVVL+K G A+YFSRATIPWHRD FA S++++P Sbjct: 121 PMATAAHAISEIEEVFNPNVVKVVLDKSGRALYFSRATIPWHRDGFAVSKDAIPAG---- 176 Query: 181 HSNEYVPLRHIGLYAYSNRFLQLYPTLAPAPLERIEALEQLRVLWHGHAIAVHVTSMVPE 240 Y PLRHIGLYAY N FLQ YP L+ +PLE++EALEQLRVLWHG IAVHVT P Sbjct: 177 ----YAPLRHIGLYAYRNAFLQEYPQLSVSPLEQLEALEQLRVLWHGVPIAVHVTPHAPV 232 Query: 241 AGVDTPEDLLRVRKHF 256 GVDTPEDL RVR+ F Sbjct: 233 TGVDTPEDLQRVRQFF 248 >ref|YP_004751877.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Collimonas fungivorans Ter331] gb|AEK61054.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Collimonas fungivorans Ter331] Length = 255 Score = 330 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 194/257 (75%), Positives = 211/257 (82%), Gaps = 8/257 (3%) Query: 2 TFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAALSGATRIIVATDHHDIHAACEQH 61 +FTVIIPARLASTRLPNKPLAD+GGKPMIVR AERAALSGA ++IVATDH +I A C QH Sbjct: 6 SFTVIIPARLASTRLPNKPLADIGGKPMIVRTAERAALSGAAQVIVATDHAEILAVCAQH 65 Query: 62 GIEVAMTRADHPSGTDRIAEVAAALGLTEDEVVVNVQGDEPLIDPGLIAATAAHIKDGVP 121 GI +TRADHPSGTDRIAEVAAALGL D VVVNVQGDEP+I+P LIAATAA I VP Sbjct: 66 GIAARLTRADHPSGTDRIAEVAAALGLAADAVVVNVQGDEPMIEPELIAATAAQITGEVP 125 Query: 122 MATAAHAIGTAEDAFNPNVVKVVLNKDGCAMYFSRATIPWHRDAFAKSRESLPDASGPDH 181 MATAAHAI +A DAFNPNVVKVVLN+ G A+YFSRATIPWHRD FA+SRE LP A Sbjct: 126 MATAAHAIDSAVDAFNPNVVKVVLNQAGRALYFSRATIPWHRDGFAQSREDLPAA----- 180 Query: 182 SNEYVPLRHIGLYAYSNRFLQLYPTLAPAPLERIEALEQLRVLWHGHAIAVHVTSMVPEA 241 YVPLRHIGLYAYSN FLQ YPTLA +PLE+IEALEQLRVLWHG+ IAVH+ P Sbjct: 181 ---YVPLRHIGLYAYSNGFLQTYPTLAVSPLEQIEALEQLRVLWHGYPIAVHIAPAAPAV 237 Query: 242 GVDTPEDLLRVRKHFEA 258 GVDT EDL RVR+ F A Sbjct: 238 GVDTLEDLERVRRFFSA 254 >ref|ZP_08275298.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31227.1| 3-deoxy-manno-octulosonate cytidylyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 249 Score = 320 bits (819), Expect = 2e-85, Method: Composition-based stats. Identities = 186/256 (72%), Positives = 202/256 (78%), Gaps = 8/256 (3%) Query: 1 MTFTVIIPARLASTRLPNKPLADLGGKPMIVRVAERAALSGATRIIVATDHHDIHAACEQ 60 M+F VIIPARLASTRLPNKPLADLGGKPM+VRVAERA SGA R+IVATDH DI AAC+ Sbjct: 1 MSFIVIIPARLASTRLPNKPLADLGGKPMVVRVAERAVQSGAARVIVATDHADILAACQL 60 Query: 61 HGIEVAMTRADHPSGTDRIAEVAAALGLTEDEVVVNVQGDEPLIDPGLIAATAAHIKDGV 120 +G+EV +TRADHPSGTDRIAEVAAALGL VVVNVQGDEPLIDP LIAATAA I D V Sbjct: 61 YGVEVQLTRADHPSGTDRIAEVAAALGLPPHAVVVNVQGDEPLIDPALIAATAALIADQV 120 Query: 121 PMATAAHAIGTAEDAFNPNVVKVVLNKDGCAMYFSRATIPWHRDAFAKSRESLPDASGPD 180 PMATAAHAI + + FN NVVKVVL++ A+YFSRA IPWHRD FA S+ LP Sbjct: 121 PMATAAHAITDSAELFNTNVVKVVLDRRSRALYFSRAVIPWHRDGFALSQAVLPSG---- 176 Query: 181 HSNEYVPLRHIGLYAYSNRFLQLYPTLAPAPLERIEALEQLRVLWHGHAIAVHVTSMVPE 240 Y PLRHIGLYAY N FLQ YP LA +PLE++EALEQLRVLWHG IAVHVT P Sbjct: 177 ----YQPLRHIGLYAYRNDFLQAYPALAISPLEQVEALEQLRVLWHGFPIAVHVTDSAPA 232 Query: 241 AGVDTPEDLLRVRKHF 256 AGVDT EDL RVR HF Sbjct: 233 AGVDTAEDLARVRLHF 248