BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3601.p (329 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774181.1| hypothetical protein Hsero_0754 [Herbaspiril... 253 2e-65 ref|YP_003774180.1| hypothetical protein Hsero_0753 [Herbaspiril... 246 4e-63 ref|YP_003774179.1| hypothetical protein Hsero_0752 [Herbaspiril... 238 7e-61 ref|YP_003774178.1| hypothetical protein Hsero_0751 [Herbaspiril... 183 4e-44 ref|YP_001721323.1| hypothetical protein YPK_2593 [Yersinia pseu... 87 4e-15 >ref|YP_003774181.1| hypothetical protein Hsero_0754 [Herbaspirillum seropedicae SmR1] gb|ADJ62273.1| hypothetical protein Hsero_0754 [Herbaspirillum seropedicae SmR1] Length = 321 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 123/261 (47%), Positives = 170/261 (65%), Gaps = 1/261 (0%) Query: 7 SRFHPQHPLWYEDLTPRSSPIDEDQDFDGACFNEDVTIVDENYMEISRESSFMRGSGIAM 66 SRF P +PLWYEDL PR+S I+ ++ DG ED+ VD NY+EISR SS +RG G+ Sbjct: 5 SRFSPSNPLWYEDLAPRASEINFEEKLDGPLLEEDLNHVDNNYVEISRTSSVLRGGGLFT 64 Query: 67 AFILFSFYGWLFVRDLRYPRAALFQ-ADFLGFFATCLAFGFAIAVLKLLYLDLRLPRDTP 125 I FSF G + + + F LG A + G ++ L+ D RLPRDTP Sbjct: 65 GLIFFSFVGTVIIPLISTIGLQFFTLIPLLGVLAVVMLLGISVWAFFLIIYDCRLPRDTP 124 Query: 126 IRFNRKTQKIYVYEFVKPKYWFQLWRTEIKVHDWNCIEAELIKIAGYTGKAYVVRHELLL 185 +RFNR TQK+Y YE+ F+ W E+KV+DW+C+EAE+ K +G++GKAY+VR+EL L Sbjct: 125 VRFNRNTQKVYSYEYAASLSSFKRWHKEVKVYDWSCVEAEVAKFSGFSGKAYIVRYELHL 184 Query: 186 VVCRPGTNEVVDRISLKGLEPLDAILAEMWAGVRRFMEGGPDAVPGIETKVREIGFLYSL 245 V+ +PGT+EV+DRI+LK + L E W+ +RRFM G +P +E + +E+GFL SL Sbjct: 185 VIGKPGTHEVIDRIALKRNDVTGLTLYERWSYLRRFMADGTGRLPKLEVRQQELGFLKSL 244 Query: 246 FAYMPYLSPSEAGIRFRNSMR 266 F+YMPYLSP++ G R+R MR Sbjct: 245 FSYMPYLSPTDEGRRYRKKMR 265 >ref|YP_003774180.1| hypothetical protein Hsero_0753 [Herbaspirillum seropedicae SmR1] gb|ADJ62272.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 121/267 (45%), Positives = 172/267 (64%), Gaps = 1/267 (0%) Query: 1 MNSRKESRFHPQHPLWYEDLTPRSSPIDEDQDFDGACFNEDVTIVDENYMEISRESSFMR 60 M ++SRF P++P WYEDL R S ID ++ D +ED+ VDENY+EISR SS +R Sbjct: 1 MTVSRKSRFTPKNPSWYEDLAARESEIDLNEPLDSPALDEDLNHVDENYLEISRTSSVIR 60 Query: 61 GSGIAMAFILFSFYG-WLFVRDLRYPRAALFQADFLGFFATCLAFGFAIAVLKLLYLDLR 119 G G+ + + F F +LF + A + G + + G +A D Sbjct: 61 GLGVLIGIMYFLFAASFLFPMLIEQWHDYFVTAPWFGLYYCTMLLGATLAASLFALHDCL 120 Query: 120 LPRDTPIRFNRKTQKIYVYEFVKPKYWFQLWRTEIKVHDWNCIEAELIKIAGYTGKAYVV 179 LPRDTP+RFNR T+KIYVYE+ Q WRTEIK++DW+ +EAE+ K++ TGK YVV Sbjct: 121 LPRDTPVRFNRNTRKIYVYEYTASLQRLQRWRTEIKIYDWDQVEAEIAKVSASTGKTYVV 180 Query: 180 RHELLLVVCRPGTNEVVDRISLKGLEPLDAILAEMWAGVRRFMEGGPDAVPGIETKVREI 239 RHEL+LV+C+ G+NEV+DRISLKG + L ++W+ +RRFM GP +P ++ +++ + Sbjct: 181 RHELVLVICKAGSNEVIDRISLKGNDVTVETLYQLWSYIRRFMAYGPARIPDLKARMQGV 240 Query: 240 GFLYSLFAYMPYLSPSEAGIRFRNSMR 266 GF+ SLF +MPY+SP+E G RFR+ MR Sbjct: 241 GFVSSLFHFMPYISPTEEGRRFRSKMR 267 >ref|YP_003774179.1| hypothetical protein Hsero_0752 [Herbaspirillum seropedicae SmR1] gb|ADJ62271.1| hypothetical protein Hsero_0752 [Herbaspirillum seropedicae SmR1] Length = 333 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 119/267 (44%), Positives = 167/267 (62%), Gaps = 1/267 (0%) Query: 1 MNSRKESRFHPQHPLWYEDLTPRSSPIDEDQDFDGACFNEDVTIVDENYMEISRESSFMR 60 M + +RF P++P WYEDL R S ID + D +ED+ +DENY+EISR SS +R Sbjct: 1 MTASSRTRFTPKNPSWYEDLAARESEIDLSERLDSPVLDEDLNHIDENYLEISRTSSVIR 60 Query: 61 GSGIAMAFILFSFYGWLFVRDLRYPRAALFQ-ADFLGFFATCLAFGFAIAVLKLLYLDLR 119 G G+ + + F F+ L Y F A FL + + G ++ V D Sbjct: 61 GLGVLIGILFFLSAVGFFIPFLIYQWDRFFAIAPFLCVYYCVMLVGGSVVVGLFALHDCL 120 Query: 120 LPRDTPIRFNRKTQKIYVYEFVKPKYWFQLWRTEIKVHDWNCIEAELIKIAGYTGKAYVV 179 LPRDTP+RFNR T+KIY YE+ Q WRTEIK++DW+ +EAE+ K++ TGK YVV Sbjct: 121 LPRDTPVRFNRNTRKIYAYEYKASLQRLQRWRTEIKIYDWDQVEAEIAKVSASTGKTYVV 180 Query: 180 RHELLLVVCRPGTNEVVDRISLKGLEPLDAILAEMWAGVRRFMEGGPDAVPGIETKVREI 239 RHEL+LV+C+ GTNEV+DRI+LKG + L ++W+ +RRFM GP +P + +V+ + Sbjct: 181 RHELVLVICKAGTNEVIDRIALKGNDVTVETLYQLWSYIRRFMAYGPARIPELTVRVQGV 240 Query: 240 GFLYSLFAYMPYLSPSEAGIRFRNSMR 266 G + LF +MPY+SP+E G RFR+ MR Sbjct: 241 GLVSCLFHFMPYISPTEEGRRFRSKMR 267 >ref|YP_003774178.1| hypothetical protein Hsero_0751 [Herbaspirillum seropedicae SmR1] gb|ADJ62270.1| hypothetical protein Hsero_0751 [Herbaspirillum seropedicae SmR1] Length = 249 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 85/150 (56%), Positives = 114/150 (76%) Query: 117 DLRLPRDTPIRFNRKTQKIYVYEFVKPKYWFQLWRTEIKVHDWNCIEAELIKIAGYTGKA 176 D LPRDTP+RFNR T+KIYVYE+ Q WR EIK++DW+ IEAE+ K++G+TGKA Sbjct: 50 DCLLPRDTPVRFNRNTRKIYVYEYTASLRRLQRWRKEIKIYDWDNIEAEIAKVSGFTGKA 109 Query: 177 YVVRHELLLVVCRPGTNEVVDRISLKGLEPLDAILAEMWAGVRRFMEGGPDAVPGIETKV 236 YVVRHEL+LV+C+ GTNEV+DRISLKG + L ++W+ VRRFM GP +P ++ +V Sbjct: 110 YVVRHELVLVICKAGTNEVIDRISLKGNDVTVETLYQLWSYVRRFMAYGPARIPDLKARV 169 Query: 237 REIGFLYSLFAYMPYLSPSEAGIRFRNSMR 266 + + F+ SLF +MPY+SP+E G RFR+ MR Sbjct: 170 QGVSFVSSLFHFMPYISPTEEGRRFRSKMR 199 >ref|YP_001721323.1| hypothetical protein YPK_2593 [Yersinia pseudotuberculosis YPIII] gb|ACA68870.1| conserved hypothetical protein [Yersinia pseudotuberculosis YPIII] Length = 260 Score = 86.7 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 107/230 (46%), Gaps = 36/230 (15%) Query: 7 SRFHPQHPLWYEDLTPRSSPIDEDQDFDGACFNEDVTIVDENYMEISRESSFMR------ 60 SR PQ W EDL ++D++ A V +++ +MEI R + M Sbjct: 17 SRLIPQVKYWEEDLP------EQDEEQPTAPRLIRVNKINDTWMEIPRYENIMWSGMWII 70 Query: 61 GSG----IAMAFILFSFYGWLFVRDLRYPRAALFQADFLGFFATCLAFGFAIAVLKLLYL 116 G G I +A G +F ++ L + F+ + L F F +A+ Sbjct: 71 GFGCFIPITIAIFFLQLPGLIFEVSMK-----LLYSFFIFLAFSMLTFFFRMALF----- 120 Query: 117 DLRLPRDTPIRFNRKTQKIYVYEFVKPKY--WFQLWRTEIKVHDWNCIEAELIKIAGYTG 174 +PR TP+RFNRK QK+YVYE + + W + W T IKV DW I E+++ G Sbjct: 121 ---VPRGTPVRFNRKRQKVYVYEHQRSNWNPWSR-WPTVIKVFDWADIHGEMVRQVG--- 173 Query: 175 KAYVVRHELLLVVCRPGTNEVVDRISLKGLEPLDAILAEMWAGVRRFMEG 224 Y H L VC+PGT EVVDR L E ++ +W+ ++M+G Sbjct: 174 -RYDSGHRLSCAVCKPGTYEVVDRFILSWTEGDSRVIRGLWSHCCQYMQG 222