BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3596.p (548 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774039.1| DNA repair protein [Herbaspirillum seropedic... 841 0.0 ref|YP_001354576.1| RecN DNA repair protein [Janthinobacterium s... 784 0.0 ref|YP_004754497.1| DNA repair protein RecN [Collimonas fungivor... 767 0.0 ref|YP_001100894.1| DNA recombination and repair protein [Hermin... 764 0.0 ref|ZP_08272886.1| DNA repair protein RecN [Oxalobacteraceae bac... 740 0.0 >ref|YP_003774039.1| DNA repair protein [Herbaspirillum seropedicae SmR1] gb|ADJ62131.1| DNA repair protein [Herbaspirillum seropedicae SmR1] Length = 548 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 494/548 (90%), Positives = 518/548 (94%) Query: 1 MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALAMGGRGDPSVVREGAA 60 MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALA+GGRGDPSVVREGAA Sbjct: 1 MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALALGGRGDPSVVREGAA 60 Query: 61 KADVSADFTATPEVMAWLDEHEFSGEHDGVLLRRVIDNAGRCKAFINGIAATATQLREVG 120 KADVSADF+ATPEV AWL+EHEF+ EH GVLLRRVIDNAGR KA+ING AATA QLREVG Sbjct: 61 KADVSADFSATPEVQAWLEEHEFADEHGGVLLRRVIDNAGRSKAYINGSAATAAQLREVG 120 Query: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEEAKAVAAAYKTWRALAKQREEFEVNAK 180 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLE+A+ VAA+YKTWRALA+QRE+FE +A+ Sbjct: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQREQFEQDAR 180 Query: 181 NVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISESDSPI 240 NVLLERERLEWQV+EL KLAVKPGEW++IS EHSRLSHAA+LI GAQEAL ISES+SPI Sbjct: 181 NVLLERERLEWQVAELHKLAVKPGEWAEISTEHSRLSHAAALISGAQEALGVISESESPI 240 Query: 241 LSQLSSLTQKLGKLTDVDAALKPVLDALEPAQIQLQEAVYALNDYLDRVELDPARLQEVE 300 LSQLSS+TQKL KL DVD ALKPVLDALEPAQIQLQEAVYALNDYL RVELDPARLQEVE Sbjct: 241 LSQLSSITQKLTKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVE 300 Query: 301 ERLEAIHSTARKFHVQPDELPEEYRKLSEELKQLADASDLDALRAQEAKLQAAYTGAAQK 360 ERLEAIHSTARKFHVQPDELPEEYRKLSE+LKQLADASDLDALRAQE KL+ AY AQK Sbjct: 301 ERLEAIHSTARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRAQEDKLRQAYLALAQK 360 Query: 361 LSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGLEQVEFLVAGHAGVAPR 420 LSK R KAA ALGEAVTAAMQDLSM+GGRF IAL EPAAYGLEQVEFLVAGHAGVAPR Sbjct: 361 LSKARAKAAAALGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVAGHAGVAPR 420 Query: 421 ALAKVASGGELARISLAISVIASAATTVPTLIFDEVDSGIGGAVAEVVGRLLKRLGQERQ 480 ALAKVASGGELARISLAISVIASAAT++PTLIFDEVDSGIGGAVAEVVGRLLKRLGQ+RQ Sbjct: 421 ALAKVASGGELARISLAISVIASAATSIPTLIFDEVDSGIGGAVAEVVGRLLKRLGQDRQ 480 Query: 481 VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDPKARVEEIARMLGGLEITATTRK 540 VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLD KARVEEIARMLGGLEITATTRK Sbjct: 481 VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDAKARVEEIARMLGGLEITATTRK 540 Query: 541 HARELLAS 548 HARELLAS Sbjct: 541 HARELLAS 548 >ref|YP_001354576.1| RecN DNA repair protein [Janthinobacterium sp. Marseille] gb|ABR88827.1| RecN DNA repair protein [Janthinobacterium sp. Marseille] Length = 548 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 444/548 (81%), Positives = 492/548 (89%) Query: 1 MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALAMGGRGDPSVVREGAA 60 MLRTL+IRDFVIVDAIELEFA GFSVFTGETGAGKSILIDALALA+GGRGD SVVREGAA Sbjct: 1 MLRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60 Query: 61 KADVSADFTATPEVMAWLDEHEFSGEHDGVLLRRVIDNAGRCKAFINGIAATATQLREVG 120 KAD++A+F+A+ E+ AWL E+EFS E G LLRRVIDN GR KAFINGI ATATQLRE+G Sbjct: 61 KADITAEFSASAELDAWLAENEFSNEDGGALLRRVIDNTGRSKAFINGIVATATQLRELG 120 Query: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEEAKAVAAAYKTWRALAKQREEFEVNAK 180 E LVDIHGQHAHQSL+K DAQR LLD+QAGL +E KAVAAAYKTWRALA+QREEFE NAK Sbjct: 121 EKLVDIHGQHAHQSLLKTDAQRVLLDNQAGLQDEVKAVAAAYKTWRALARQREEFETNAK 180 Query: 181 NVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISESDSPI 240 NVLLERERLEWQV ELEKLAVKPGEW+DISNEHSRLSHAASLI+GAQEAL+ ISE+D+P+ Sbjct: 181 NVLLERERLEWQVGELEKLAVKPGEWTDISNEHSRLSHAASLIEGAQEALNLISEADTPM 240 Query: 241 LSQLSSLTQKLGKLTDVDAALKPVLDALEPAQIQLQEAVYALNDYLDRVELDPARLQEVE 300 LSQLSSL ++GKL D+DA L+PVLDALEPA+IQLQEAVYALNDYL RVELDPARL+EVE Sbjct: 241 LSQLSSLNTRIGKLVDLDAGLQPVLDALEPARIQLQEAVYALNDYLSRVELDPARLREVE 300 Query: 301 ERLEAIHSTARKFHVQPDELPEEYRKLSEELKQLADASDLDALRAQEAKLQAAYTGAAQK 360 RLE IHS +RKF V D+LP+E LS +LKQLADASDLDALRAQE KL+AAYT AAQK Sbjct: 301 VRLENIHSASRKFRVAADDLPQELETLSAQLKQLADASDLDALRAQEEKLKAAYTSAAQK 360 Query: 361 LSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGLEQVEFLVAGHAGVAPR 420 L+K R KAAKALG+AVTAAMQ+LSM+GG+FAIAL+ CEPA+YGLEQ+EF+VA HAG PR Sbjct: 361 LTKARSKAAKALGDAVTAAMQELSMTGGKFAIALQPCEPASYGLEQIEFMVAAHAGTTPR 420 Query: 421 ALAKVASGGELARISLAISVIASAATTVPTLIFDEVDSGIGGAVAEVVGRLLKRLGQERQ 480 LAKVASGGELARI+LAISVI S+AT PTLIFDEVDSGIGG VAEVVGRLL+RLGQ+RQ Sbjct: 421 PLAKVASGGELARIALAISVITSSATATPTLIFDEVDSGIGGGVAEVVGRLLRRLGQDRQ 480 Query: 481 VLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDPKARVEEIARMLGGLEITATTRK 540 VLCVTHLPQVASQANQH+QV K+S GKT+S ID LD ARVEEIARMLGGLEITATTR Sbjct: 481 VLCVTHLPQVASQANQHFQVSKQSSNGKTVSSIDALDSNARVEEIARMLGGLEITATTRS 540 Query: 541 HARELLAS 548 HARELLA+ Sbjct: 541 HARELLAN 548 >ref|YP_004754497.1| DNA repair protein RecN [Collimonas fungivorans Ter331] gb|AEK63674.1| DNA repair protein RecN [Collimonas fungivorans Ter331] Length = 560 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 435/555 (78%), Positives = 493/555 (88%), Gaps = 8/555 (1%) Query: 1 MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALAMGGRGDPSVVREGAA 60 MLRTL+IRDFVIVDAIELEFA GF+VFTGETGAGKSILIDALALA+GGRGD SVVREGAA Sbjct: 5 MLRTLSIRDFVIVDAIELEFAAGFTVFTGETGAGKSILIDALALALGGRGDASVVREGAA 64 Query: 61 KADVSADFT----ATPEVMAWLDEHEFSGEHDGVLLRRVIDNAGRCKAFINGIAATATQL 116 KADV+A+F A EV +WL+ +EF+ E +L+RRVIDNAGR KAFING+AATA QL Sbjct: 65 KADVTAEFALAGAADGEVGSWLERNEFASEEGVILMRRVIDNAGRSKAFINGVAATAGQL 124 Query: 117 REVGEMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEEAKAVAAAYKTWRALAKQREEFE 176 RE+GEMLVDIHGQHAHQSL+K+DAQR LLD QAGL ++ AVAAA+K+WR+LA+QREEFE Sbjct: 125 RELGEMLVDIHGQHAHQSLLKSDAQRLLLDGQAGLQDDLLAVAAAFKSWRSLARQREEFE 184 Query: 177 VNAKNVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISES 236 NAKNVLLERERLEWQV ELEKLAVKPGEW +I+NEHSRLSHAASLI+GAQEAL+ ISE+ Sbjct: 185 TNAKNVLLERERLEWQVGELEKLAVKPGEWDEITNEHSRLSHAASLIEGAQEALNVISEN 244 Query: 237 DS----PILSQLSSLTQKLGKLTDVDAALKPVLDALEPAQIQLQEAVYALNDYLDRVELD 292 D+ P+LSQLS+L QK+GKL DVD++LKPVL+ALEPA+IQLQEAVYALNDYL RVELD Sbjct: 245 DADDTPPMLSQLSALNQKIGKLVDVDSSLKPVLEALEPARIQLQEAVYALNDYLSRVELD 304 Query: 293 PARLQEVEERLEAIHSTARKFHVQPDELPEEYRKLSEELKQLADASDLDALRAQEAKLQA 352 PARL +VE+R+EAIHS RKF + PDELP+E LS++L+QLADASDLDA++AQE KL+ Sbjct: 305 PARLHQVEDRMEAIHSAGRKFRLAPDELPQELETLSQQLRQLADASDLDAMKAQEEKLKT 364 Query: 353 AYTGAAQKLSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGLEQVEFLVA 412 Y G AQKLSK R KAA+ALG AVTAAMQDLSMSGGRFA+AL CE A+YG+EQVEFLVA Sbjct: 365 TYLGLAQKLSKARTKAAQALGAAVTAAMQDLSMSGGRFAVALNPCEAASYGVEQVEFLVA 424 Query: 413 GHAGVAPRALAKVASGGELARISLAISVIASAATTVPTLIFDEVDSGIGGAVAEVVGRLL 472 GHAGVAPR LAKVASGGELARI+LAISVI S++T PTLIFDEVDSGIGG VAEVVGRLL Sbjct: 425 GHAGVAPRPLAKVASGGELARIALAISVITSSSTATPTLIFDEVDSGIGGGVAEVVGRLL 484 Query: 473 KRLGQERQVLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDPKARVEEIARMLGGL 532 KRLGQ+RQVLCVTHLPQVASQANQH+QV K+S+G KT+S IDGLD K R+EEIARMLGGL Sbjct: 485 KRLGQDRQVLCVTHLPQVASQANQHFQVSKQSQGNKTVSAIDGLDAKNRIEEIARMLGGL 544 Query: 533 EITATTRKHARELLA 547 EITATTRKHARELLA Sbjct: 545 EITATTRKHARELLA 559 >ref|YP_001100894.1| DNA recombination and repair protein [Herminiimonas arsenicoxydans] emb|CAL62773.1| DNA repair protein RecN (Recombination protein N) [Herminiimonas arsenicoxydans] Length = 549 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 436/549 (79%), Positives = 487/549 (88%), Gaps = 1/549 (0%) Query: 1 MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALAMGGRGDPSVVREGAA 60 MLRTL+IRDFVIVDAIELEF+ GFSVFTGETGAGKSILIDALALA+GGRGD SVVREGAA Sbjct: 1 MLRTLSIRDFVIVDAIELEFSSGFSVFTGETGAGKSILIDALALALGGRGDASVVREGAA 60 Query: 61 KADVSADFTATPEVMAWLDEHEFSGEHDGVLLRRVIDNAGRCKAFINGIAATATQLREVG 120 KAD++A+F+A+ E+ AWL E+EF+ E G LLRRVIDNAGR KAFINGIAATATQLRE+G Sbjct: 61 KADITAEFSASAELDAWLAENEFTNEEGGALLRRVIDNAGRSKAFINGIAATATQLRELG 120 Query: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEEAKAVAAAYKTWRALAKQREEFEVNAK 180 E LVDIHGQHAHQSL+K D QR LLD+QAGL EE KAVA AYKTWRALA+QREEFE NAK Sbjct: 121 EKLVDIHGQHAHQSLLKQDMQRVLLDNQAGLQEEVKAVAGAYKTWRALARQREEFETNAK 180 Query: 181 NVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISESDS-P 239 NVLLERERLEWQV ELEKL+VKPGEW+DI+NEHSRLSHAASLI GAQ+AL+ IS++++ P Sbjct: 181 NVLLERERLEWQVGELEKLSVKPGEWADITNEHSRLSHAASLIKGAQDALTLISDAETAP 240 Query: 240 ILSQLSSLTQKLGKLTDVDAALKPVLDALEPAQIQLQEAVYALNDYLDRVELDPARLQEV 299 +LSQLSSL ++GKL D+DA L+PVLDALEPA+IQLQEAVYALNDYL RVELDPARL+EV Sbjct: 241 MLSQLSSLNIRIGKLIDLDAGLQPVLDALEPARIQLQEAVYALNDYLSRVELDPARLREV 300 Query: 300 EERLEAIHSTARKFHVQPDELPEEYRKLSEELKQLADASDLDALRAQEAKLQAAYTGAAQ 359 E RLE IHS +RKFHV D+LP+E LS +LKQLADASDLDALR QE KLQAAY AAQ Sbjct: 301 ETRLENIHSASRKFHVAADDLPQELETLSAQLKQLADASDLDALRVQEEKLQAAYMAAAQ 360 Query: 360 KLSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGLEQVEFLVAGHAGVAP 419 KLSK R KAA+ALG+AVT AMQ+LSM+GG+FAIAL+ CEPA+YG+EQ+EF+VA HAG P Sbjct: 361 KLSKARSKAARALGDAVTTAMQELSMTGGKFAIALQPCEPASYGVEQIEFMVAAHAGTTP 420 Query: 420 RALAKVASGGELARISLAISVIASAATTVPTLIFDEVDSGIGGAVAEVVGRLLKRLGQER 479 R LAKVASGGELARI+LAISVI S+AT PTLIFDEVDSGIGG VAEVVGRLL+RLGQ+R Sbjct: 421 RPLAKVASGGELARIALAISVITSSATATPTLIFDEVDSGIGGGVAEVVGRLLRRLGQDR 480 Query: 480 QVLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDPKARVEEIARMLGGLEITATTR 539 QVLCVTHLPQVASQANQH+QV K+S GKT S I LD ARVEEIARMLGGLEITATTR Sbjct: 481 QVLCVTHLPQVASQANQHFQVSKQSSNGKTASSIAALDDHARVEEIARMLGGLEITATTR 540 Query: 540 KHARELLAS 548 HARELLAS Sbjct: 541 THARELLAS 549 >ref|ZP_08272886.1| DNA repair protein RecN [Oxalobacteraceae bacterium IMCC9480] gb|EGF33650.1| DNA repair protein RecN [Oxalobacteraceae bacterium IMCC9480] Length = 551 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 418/551 (75%), Positives = 476/551 (86%), Gaps = 3/551 (0%) Query: 1 MLRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALAMGGRGDPSVVREGAA 60 MLRTLTIRDFVIVD IEL+F+ GFSV TGETGAGKSILIDALALA+GGRGD SVVR+GAA Sbjct: 1 MLRTLTIRDFVIVDLIELDFSAGFSVLTGETGAGKSILIDALALALGGRGDASVVRDGAA 60 Query: 61 KADVSADFTATPEVMAWLDEHEFSGEHDGVLLRRVIDNAGRCKAFINGIAATATQLREVG 120 KAD+SAD++ E AWL H+F+ GVLLRRVIDNAGR KA+INGIAATATQLR++G Sbjct: 61 KADISADYSTHAEADAWLAAHDFASPDGGVLLRRVIDNAGRSKAYINGIAATATQLRDLG 120 Query: 121 EMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEEAKAVAAAYKTWRALAKQREEFEVNAK 180 E+LVDIHGQHAHQSL+K DAQRQLLD+QA L E+ +AV AYK+WRA+ KQREEFE NAK Sbjct: 121 ELLVDIHGQHAHQSLLKTDAQRQLLDTQASLQEQVRAVGTAYKSWRAVGKQREEFETNAK 180 Query: 181 NVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISESDS-- 238 NVLLERERLEWQV EL+KLA + GEW++IS+EHSRLSHAASLIDGAQ+AL+AISES+S Sbjct: 181 NVLLERERLEWQVGELDKLAPQDGEWTEISSEHSRLSHAASLIDGAQDALTAISESESGT 240 Query: 239 -PILSQLSSLTQKLGKLTDVDAALKPVLDALEPAQIQLQEAVYALNDYLDRVELDPARLQ 297 P+LSQL++L +LGKL D+D LKPVLD LEPA+IQLQEAVYALNDYL R+ELDP RLQ Sbjct: 241 VPMLSQLTALNLRLGKLADIDDGLKPVLDLLEPARIQLQEAVYALNDYLGRLELDPRRLQ 300 Query: 298 EVEERLEAIHSTARKFHVQPDELPEEYRKLSEELKQLADASDLDALRAQEAKLQAAYTGA 357 +VE+RL +HSTARKFH+ P+ELP+E+ LS +L+QLADASDLDALRAQE KL+ Y Sbjct: 301 QVEQRLGDLHSTARKFHITPEELPQEFAALSAQLRQLADASDLDALRAQEEKLKDHYLAL 360 Query: 358 AQKLSKGRIKAAKALGEAVTAAMQDLSMSGGRFAIALEACEPAAYGLEQVEFLVAGHAGV 417 A+KLS R+KAA+ LGEAVT AMQ+LSM+GGRF +AL C PA G+EQ+EFLVAGHAG Sbjct: 361 AKKLSAARMKAARVLGEAVTKAMQELSMAGGRFEVALVPCAPAVSGVEQIEFLVAGHAGS 420 Query: 418 APRALAKVASGGELARISLAISVIASAATTVPTLIFDEVDSGIGGAVAEVVGRLLKRLGQ 477 PR LAKVASGGELARI+LAISVIAS ATT PTLIFDEVDSGIGG VAEVVGRLLK+LGQ Sbjct: 421 VPRPLAKVASGGELARIALAISVIASTATTTPTLIFDEVDSGIGGGVAEVVGRLLKKLGQ 480 Query: 478 ERQVLCVTHLPQVASQANQHYQVKKRSEGGKTLSDIDGLDPKARVEEIARMLGGLEITAT 537 ERQVLCVTHLPQVASQANQH QV K + GKT+S I LD K+RVEEIARMLGG+EITAT Sbjct: 481 ERQVLCVTHLPQVASQANQHLQVSKFNAAGKTVSRIAALDSKSRVEEIARMLGGIEITAT 540 Query: 538 TRKHARELLAS 548 TRKHARELLAS Sbjct: 541 TRKHARELLAS 551