BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3589.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774044.1| 3-methyl-2-oxobutanoate hydroxymethyltransfe...   221   2e-56
ref|YP_004754483.1| 3-methyl-2-oxobutanoate hydroxymethyltransfe...   160   4e-38
ref|ZP_08276065.1| 3-methyl-2-oxobutanoate hydroxymethyltransfer...   156   1e-36
ref|YP_001100884.1| 3-methyl-2-oxobutanoate hydroxymethyltransfe...   147   4e-34
ref|YP_001354568.1| 3-methyl-2-oxobutanoate hydroxymethyltransfe...   147   6e-34

>ref|YP_003774044.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62136.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  221 bits (564), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 113/116 (97%), Positives = 115/116 (99%)

Query: 1   MAGYLQESGAARAKPVTTHTLQAMRAKGDKISMLTCYDASFATLMERAGLETVLIGDSLG 60
           MAGYLQESGAARAKPVTTHTLQAMRAKGDKISMLTCYDASFATLMERAGL+TVLIGDSLG
Sbjct: 1   MAGYLQESGAARAKPVTTHTLQAMRAKGDKISMLTCYDASFATLMERAGLDTVLIGDSLG 60

Query: 61  MVCQGHDSTLPVTIQDMAYHTAAVACGTRTMLIIADLPFGTYPTREEAFRNAALLM 116
           MVCQGHDSTLPVTIQD+AYHTAAVA GTRTMLIIADLPFGTYPTREEAFRNAALLM
Sbjct: 61  MVCQGHDSTLPVTIQDVAYHTAAVARGTRTMLIIADLPFGTYPTREEAFRNAALLM 116


>ref|YP_004754483.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Collimonas
           fungivorans Ter331]
 gb|AEK63660.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Collimonas
           fungivorans Ter331]
          Length = 278

 Score =  160 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 83/113 (73%), Positives = 95/113 (84%), Gaps = 1/113 (0%)

Query: 1   MAGYLQESG-AARAKPVTTHTLQAMRAKGDKISMLTCYDASFATLMERAGLETVLIGDSL 59
           MAGYLQ S  AAR+KP+T   LQA+R KG+KI+MLTCYDASFA LM+R G+ET+LIGDSL
Sbjct: 3   MAGYLQGSDPAARSKPITIPALQALRDKGEKITMLTCYDASFAALMDRCGVETLLIGDSL 62

Query: 60  GMVCQGHDSTLPVTIQDMAYHTAAVACGTRTMLIIADLPFGTYPTREEAFRNA 112
           GMVCQGH STLPVTIQD+ YHTA+VA G RT L++ADLPFGTY T E AF NA
Sbjct: 63  GMVCQGHSSTLPVTIQDIVYHTASVARGNRTALVLADLPFGTYATPESAFANA 115


>ref|ZP_08276065.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF30469.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 278

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/117 (66%), Positives = 94/117 (80%), Gaps = 1/117 (0%)

Query: 1   MAGYLQES-GAARAKPVTTHTLQAMRAKGDKISMLTCYDASFATLMERAGLETVLIGDSL 59
           MAGYLQE+  A R KPVT HTL A+R  G+KI+MLTCYDASF+ LM+R G++ +L+GDSL
Sbjct: 3   MAGYLQENQSAGRNKPVTIHTLAALRQAGEKITMLTCYDASFSALMDRCGIDIMLVGDSL 62

Query: 60  GMVCQGHDSTLPVTIQDMAYHTAAVACGTRTMLIIADLPFGTYPTREEAFRNAALLM 116
           GMV QGHDSTLPVT+ DMAYHTA VA G  T +++ADLPFG+Y T E A+ NA LLM
Sbjct: 63  GMVSQGHDSTLPVTVADMAYHTACVARGNHTAMLMADLPFGSYATPESAYANAVLLM 119


>ref|YP_001100884.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Herminiimonas
           arsenicoxydans]
 emb|CAL62763.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate
           hydroxymethyltransferase) (KPHMT) [Herminiimonas
           arsenicoxydans]
          Length = 276

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/117 (64%), Positives = 93/117 (79%), Gaps = 1/117 (0%)

Query: 1   MAGYLQES-GAARAKPVTTHTLQAMRAKGDKISMLTCYDASFATLMERAGLETVLIGDSL 59
           M  YLQE+  A R K VT   L A+RAKG+KI+MLT YDASFA+LM+  G+ET+L+GDSL
Sbjct: 1   MTSYLQENETAGRNKAVTVPALFALRAKGEKITMLTAYDASFASLMDMCGVETLLVGDSL 60

Query: 60  GMVCQGHDSTLPVTIQDMAYHTAAVACGTRTMLIIADLPFGTYPTREEAFRNAALLM 116
           GMVCQGH STLPVTI+D+AYHTA VA G +T L++AD+PFG+Y T E AF+NA  L+
Sbjct: 61  GMVCQGHSSTLPVTIEDIAYHTACVARGNKTALLLADMPFGSYATPESAFQNAVKLI 117


>ref|YP_001354568.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Janthinobacterium
           sp. Marseille]
 sp|A6T221|PANB_JANMA RecName: Full=3-methyl-2-oxobutanoate hydroxymethyltransferase;
           AltName: Full=Ketopantoate hydroxymethyltransferase;
           Short=KPHMT
 gb|ABR88643.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Janthinobacterium
           sp. Marseille]
          Length = 272

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 71/116 (61%), Positives = 95/116 (81%), Gaps = 3/116 (2%)

Query: 1   MAGYLQESGAARAKPVTTHTLQAMRAKGDKISMLTCYDASFATLMERAGLETVLIGDSLG 60
           M+ YLQE   AR K VT  +L AM+ +G+KI+MLT YDASFA++M+  G+E +LIGDSLG
Sbjct: 1   MSSYLQE---ARTKAVTIPSLLAMKERGEKITMLTAYDASFASMMDTCGVEMILIGDSLG 57

Query: 61  MVCQGHDSTLPVTIQDMAYHTAAVACGTRTMLIIADLPFGTYPTREEAFRNAALLM 116
           MVCQGH+STLPVTI+D+AYHTA VA G++T  +++D+PFG+Y T+EEAF+NA  L+
Sbjct: 58  MVCQGHNSTLPVTIEDVAYHTACVARGSKTAFVMSDMPFGSYATKEEAFKNAVKLV 113