BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3586.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774046.1| methyl-accepting chemotaxis protein [Herbasp...   157   3e-37
ref|NP_902183.1| methyl-accepting chemotaxis protein [Chromobact...    79   3e-13
ref|YP_003052479.1| methyl-accepting chemotaxis sensory transduc...    77   6e-13
ref|YP_004393826.1| methyl-accepting chemotaxis protein [Aeromon...    77   8e-13
ref|YP_003524211.1| methyl-accepting chemotaxis sensory transduc...    74   7e-12

>ref|YP_003774046.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ62138.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae
           SmR1]
          Length = 301

 Score =  157 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 100/134 (74%), Positives = 109/134 (81%), Gaps = 3/134 (2%)

Query: 2   AAIGATGDAADTEG-IAENSRAVIDQIIADFRHSAMKLTTTMETLEDEGREVDREVCDIL 60
           A +GA+G+A   EG I E SRAVIDQ+IADFR SAMKL++T+E LEDE REVDREVCDIL
Sbjct: 168 AVLGASGEAPAGEGEIVEQSRAVIDQVIADFRQSAMKLSSTVEQLEDESREVDREVCDIL 227

Query: 61  VHLQFQDRISQILDHVQQDILRLR--SAAAEARALPSPQQWLTDLEKTYTTQEQRQMHAG 118
           VHLQFQDRISQILDHVQ DI RLR  +A     ALPS QQWL DLEKTYTTQEQRQ+HAG
Sbjct: 228 VHLQFQDRISQILDHVQHDIARLRAAAAEDAPAALPSAQQWLADLEKTYTTQEQRQVHAG 287

Query: 119 QQGHPAPPSQVDFF 132
           QQG  A  SQVDFF
Sbjct: 288 QQGGAATASQVDFF 301


>ref|NP_902183.1| methyl-accepting chemotaxis protein [Chromobacterium violaceum ATCC
           12472]
 gb|AAQ60184.1| probable methyl-accepting chemotaxis protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 382

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 10/124 (8%)

Query: 19  NSRAVIDQIIADFRHSAMKLTTTMETLEDEGREVDREVCDILVHLQFQDRISQILDHVQQ 78
           N+  ++D+ + DF  +A KL    + ++ EG  V++E+   L+ LQFQDR+SQI+ HV Q
Sbjct: 259 NALGLLDESVRDFSAAAEKLAQVNQRMQTEGSRVEKELHASLIALQFQDRVSQIVQHVAQ 318

Query: 79  DILRLRS---AAAEARAL------PSPQQWLTDLEKTYTTQEQRQMHAGQQGHPAPPS-Q 128
           D+ ++++   A  EAR          P++WL  LE TYTT EQ  +H G  G PA  S  
Sbjct: 319 DLKQMQAHLEAVREARRRGEKGPEAHPREWLKRLESTYTTLEQAALHQGGGGKPAASSGD 378

Query: 129 VDFF 132
           VDFF
Sbjct: 379 VDFF 382


>ref|YP_003052479.1| methyl-accepting chemotaxis sensory transducer [Methylovorus
           glucosetrophus SIP3-4]
 ref|YP_004041033.1| methyl-accepting chemotaxis sensory transducer [Methylovorus sp.
           MP688]
 gb|ACT51952.1| methyl-accepting chemotaxis sensory transducer [Methylovorus
           glucosetrophus SIP3-4]
 gb|ADQ85797.1| methyl-accepting chemotaxis sensory transducer [Methylovorus sp.
           MP688]
          Length = 329

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/112 (34%), Positives = 62/112 (55%)

Query: 16  IAENSRAVIDQIIADFRHSAMKLTTTMETLEDEGREVDREVCDILVHLQFQDRISQILDH 75
           + +N+   I+ ++  F+H A +LT + ET   E + +  E+  +LV LQFQDR+SQIL +
Sbjct: 208 MVQNAETAINDVLGKFKHQADELTASAETARSESKHIGGEIAQVLVSLQFQDRVSQILAN 267

Query: 76  VQQDILRLRSAAAEARALPSPQQWLTDLEKTYTTQEQRQMHAGQQGHPAPPS 127
           V + +  L    A   A   PQ WL  ++ +YT  EQ  +H+G     A P+
Sbjct: 268 VSEQLNMLHQEVASGTAYIDPQSWLGRMQNSYTMPEQTNIHSGHASVAALPN 319


>ref|YP_004393826.1| methyl-accepting chemotaxis protein [Aeromonas veronii B565]
 gb|AEB51209.1| Methyl-accepting chemotaxis protein, putative [Aeromonas veronii
           B565]
          Length = 404

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 74/135 (54%), Gaps = 10/135 (7%)

Query: 6   ATGDAADTEGIAENSRAVIDQIIADFRHSAMKLTTTMETLEDEGREVDREVCDILVHLQF 65
           A   AA     A NS   I+Q+++ FRH+   L  +   L++E  ++ RE+  ++V LQF
Sbjct: 266 AENAAARDHASALNSEQTIEQVLSRFRHATDSLAESASLLQNESTDIHREISSVIVSLQF 325

Query: 66  QDRISQILDHVQQDILRLRS---AAAEARALPSPQQ-----WLTDLEKTYTTQEQRQMHA 117
           QDR+SQIL HV+Q++  L S   A+ ++     P Q     WL ++E +Y T EQR +H 
Sbjct: 326 QDRVSQILSHVRQNMESLSSHLVASEQSSNATGPIQIDANRWLAEMELSYATDEQRNIHH 385

Query: 118 GQQGHP--APPSQVD 130
           G+      A PS  D
Sbjct: 386 GRTTRSVNAQPSSAD 400


>ref|YP_003524211.1| methyl-accepting chemotaxis sensory transducer [Sideroxydans
           lithotrophicus ES-1]
 gb|ADE11824.1| methyl-accepting chemotaxis sensory transducer [Sideroxydans
           lithotrophicus ES-1]
          Length = 402

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 13/132 (9%)

Query: 12  DTEGIAENSRAVIDQIIADFRHSAMKLTTTMETLEDEGREVDREVCDILVHLQFQDRISQ 71
           DTE +A NS  VI+ ++A F  +   L  + E L +E + +  E+ ++LV LQFQDR+SQ
Sbjct: 273 DTEMVA-NSELVIEHVMAKFGTATSGLADSAEILRNESQIIGNEISEVLVALQFQDRVSQ 331

Query: 72  ILDHVQQDILRL----------RSAAAEARALPSPQQWLTDLEKTYTTQEQRQMHAGQQG 121
           +L HV+ D+ +L          R+A   A ++ + + WL +L +TYT  EQ  +H G+Q 
Sbjct: 332 MLMHVRNDLGKLEDHLHECEHDRAAGNTANSMDA-RAWLNELAQTYTMPEQHAVHDGKQH 390

Query: 122 HPA-PPSQVDFF 132
            PA   S + FF
Sbjct: 391 IPANNSSDITFF 402