BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3585.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774047.1| two-component system sensor histidine kinase...   214   4e-54
ref|YP_004472240.1| response regulator receiver protein [Pseudom...   162   2e-38
ref|YP_004382311.1| two-component system sensor histidine kinase...   159   1e-37
ref|YP_855580.1| chemotaxis protein CheY [Aeromonas hydrophila s...   157   6e-37
ref|YP_004353525.1| CheY family response regulator [Pseudomonas ...   157   7e-37

>ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62139.1| two-component system sensor histidine kinase/response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score =  214 bits (544), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/122 (90%), Positives = 115/122 (94%)

Query: 1   MEKCILIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGRKFNLVISDLNMPNLD 60
           MEK ILIVDDSFSLRQTI+AALKSAGY VEEAADG +AL  LDGRKFNLVISDLNMP+LD
Sbjct: 1   MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60

Query: 61  GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLV 120
           GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPF PPVLLDAVAKL+
Sbjct: 61  GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120

Query: 121 QP 122
            P
Sbjct: 121 LP 122


>ref|YP_004472240.1| response regulator receiver protein [Pseudomonas fulva 12-X]
 gb|AEF20146.1| response regulator receiver protein [Pseudomonas fulva 12-X]
          Length = 122

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/122 (63%), Positives = 100/122 (81%)

Query: 1   MEKCILIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGRKFNLVISDLNMPNLD 60
           M K +LIVDDS S+RQ ++  LK AGYQV E  DG +AL KLDGRK +L+ISD+NMPN+D
Sbjct: 1   MSKTVLIVDDSASIRQVVSITLKGAGYQVIEGCDGKDALSKLDGRKVHLIISDVNMPNMD 60

Query: 61  GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLV 120
           G++FV+ +KQ+PAYKFTPVIMLTTE+ EA+K+EG+AAG +AWV KPF P  +L AV+KL+
Sbjct: 61  GITFVKNVKQLPAYKFTPVIMLTTEAGEAKKEEGRAAGAKAWVVKPFQPAQMLTAVSKLI 120

Query: 121 QP 122
            P
Sbjct: 121 LP 122


>ref|YP_004382311.1| two-component system sensor histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
 gb|AEB60559.1| two-component system sensor histidine kinase/response regulator,
           putative [Pseudomonas mendocina NK-01]
          Length = 122

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/122 (62%), Positives = 99/122 (81%)

Query: 1   MEKCILIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGRKFNLVISDLNMPNLD 60
           M K +LIVDDS S+RQ ++  LK AGY V E  DG +AL KLDGRK +L+ISD+NMPN+D
Sbjct: 1   MGKTVLIVDDSASIRQVVSITLKGAGYDVIEGCDGKDALTKLDGRKVHLIISDVNMPNMD 60

Query: 61  GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLV 120
           G++F++ +KQ+PAYKFTPVIMLTTE+ EA+K EG+AAG +AWV KPF P  +L+AV+KL+
Sbjct: 61  GITFLKNVKQLPAYKFTPVIMLTTEAGEAKKDEGRAAGAKAWVVKPFQPAQMLNAVSKLI 120

Query: 121 QP 122
            P
Sbjct: 121 LP 122


>ref|YP_855580.1| chemotaxis protein CheY [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gb|ABK39884.1| chemotaxis protein CheY [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 122

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 78/122 (63%), Positives = 100/122 (81%)

Query: 1   MEKCILIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGRKFNLVISDLNMPNLD 60
           M K +LIVDDS ++RQ +   LK AGY+V EA DG +ALKKLDG+K NL+ISD+NMPN+D
Sbjct: 1   MAKTVLIVDDSATIRQVVGMTLKGAGYEVMEACDGKDALKKLDGKKINLIISDVNMPNMD 60

Query: 61  GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLV 120
           G+SFV+E K++ +YKFTPVIMLTTES +++KQEG+AAG +AWV KPF P  +L AVAKL+
Sbjct: 61  GISFVKEAKKLASYKFTPVIMLTTESQDSKKQEGQAAGAKAWVVKPFQPDQMLAAVAKLI 120

Query: 121 QP 122
            P
Sbjct: 121 MP 122


>ref|YP_004353525.1| CheY family response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gb|AEA68521.1| putative response regulator, CheY family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 122

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/122 (62%), Positives = 97/122 (79%)

Query: 1   MEKCILIVDDSFSLRQTITAALKSAGYQVEEAADGLEALKKLDGRKFNLVISDLNMPNLD 60
           M K ILIVDDS S+RQ ++  LK AGY+V E  DG +AL KLDGRK +L++SD+NMPN+D
Sbjct: 1   MSKTILIVDDSASIRQVVSITLKGAGYEVIEGVDGRDALTKLDGRKIHLIVSDVNMPNMD 60

Query: 61  GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFLPPVLLDAVAKLV 120
           GLSF++  KQ+PAYKFTPVIMLTTE+ EA KQ+G+A G +AW+ KPF P  +L AV+KL+
Sbjct: 61  GLSFIKAAKQLPAYKFTPVIMLTTETGEAMKQQGQAVGAKAWMVKPFQPAQMLGAVSKLI 120

Query: 121 QP 122
            P
Sbjct: 121 MP 122