BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3584.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774048.1| anti-sigma-factor antagonist (STAS) domain-c...   106   1e-21
ref|YP_004353526.1| hypothetical protein PSEBR_a2246 [Pseudomona...    60   9e-08
ref|YP_522179.1| anti-sigma-factor antagonist domain-containing ...    59   2e-07
ref|YP_001143002.1| sulfate transporter/antisigma-factor antagon...    58   4e-07
ref|YP_855579.1| anti-sigma-B factor antagonist [Aeromonas hydro...    57   6e-07

>ref|YP_003774048.1| anti-sigma-factor antagonist (STAS) domain-containing protein
          [Herbaspirillum seropedicae SmR1]
 gb|ADJ62140.1| anti-sigma-factor antagonist (STAS) domain protein
          [Herbaspirillum seropedicae SmR1]
          Length = 102

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 75/97 (77%), Positives = 82/97 (84%)

Query: 1  MPLTYSVQEDRLLLTVSGGLTIFQAAERKPELLHALTLPQTQVVLDLSGVDELDTAGIQL 60
          MP+T +VQED+LLL VSGGLTIFQAAERKPELLH LTL Q QV LDL+GVDE+DTAGIQL
Sbjct: 1  MPVTLTVQEDKLLLQVSGGLTIFQAAERKPELLHVLTLAQPQVQLDLAGVDEIDTAGIQL 60

Query: 61 LLLLRRELAAGGRQLEIGVYSPAVLATLDLLQLHERF 97
          LLLLRREL A GR L+I   SPA+L   DLLQLHERF
Sbjct: 61 LLLLRRELRAQGRSLDIVGASPALLVAFDLLQLHERF 97


>ref|YP_004353526.1| hypothetical protein PSEBR_a2246 [Pseudomonas brassicacearum
          subsp. brassicacearum NFM421]
 gb|AEA68522.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
          brassicacearum NFM421]
          Length = 105

 Score = 60.5 bits (145), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 1/87 (1%)

Query: 11 RLLLTVSGGLTIFQAAERKPELLHALTLPQTQVVLDLSGVDELDTAGIQLLLLLRRELAA 70
          R +L + G LTI+ AAERK  LL    L Q +V +DL GVDE+DTAG+QLL+L+++E   
Sbjct: 9  RRILVLEGPLTIYTAAERKDLLLELFPLAQ-EVEMDLGGVDEMDTAGLQLLVLIKQESLR 67

Query: 71 GGRQLEIGVYSPAVLATLDLLQLHERF 97
           G  L +   S AVL  LD+  LH  F
Sbjct: 68 HGSNLLLSNPSTAVLDALDMSGLHSFF 94


>ref|YP_522179.1| anti-sigma-factor antagonist domain-containing protein
          [Rhodoferax ferrireducens T118]
 gb|ABD68648.1| anti-sigma-factor antagonist (STAS) domain protein [Rhodoferax
          ferrireducens T118]
          Length = 121

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 4/85 (4%)

Query: 13 LLTVSGGLTIFQAAERKPELLHALTLPQTQVVLDLSGVDELDTAGIQLLLLLRRELAAGG 72
          +L + G LTIF+AAE KP LL     P  Q + DLSGV ELDTAG+QLL+L ++   A  
Sbjct: 13 VLRIEGELTIFRAAELKPLLLAE---PMAQAI-DLSGVTELDTAGVQLLMLAKKMALATQ 68

Query: 73 RQLEIGVYSPAVLATLDLLQLHERF 97
          R+L +  +SPAV+   +LL L   F
Sbjct: 69 RKLSLVAHSPAVIEVFELLNLAAYF 93


>ref|YP_001143002.1| sulfate transporter/antisigma-factor antagonist STAS [Aeromonas
          salmonicida subsp. salmonicida A449]
 gb|ABO91254.1| sulfate transporter/antisigma-factor antagonist STAS [Aeromonas
          salmonicida subsp. salmonicida A449]
          Length = 108

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 1/97 (1%)

Query: 1  MPLTYSVQEDRLLLTVSGGLTIFQAAERKPELLHALTLPQTQVVLDLSGVDELDTAGIQL 60
          MPL     E + L+ +SG +TI+ AAE K + L  L   Q  + LDLSGV E+D+AG+QL
Sbjct: 1  MPLHIETGEHKTLVKISGEMTIYTAAELK-QALTPLLYRQQALELDLSGVSEMDSAGLQL 59

Query: 61 LLLLRRELAAGGRQLEIGVYSPAVLATLDLLQLHERF 97
          LL  ++ +  G   L + ++S AVL  L+L QL   F
Sbjct: 60 LLAAKKTMQQGDSPLHLVMHSHAVLDALELCQLAAFF 96


>ref|YP_855579.1| anti-sigma-B factor antagonist [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gb|ABK39023.1| anti-sigma-B factor antagonist [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
          Length = 108

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 1/97 (1%)

Query: 1  MPLTYSVQEDRLLLTVSGGLTIFQAAERKPELLHALTLPQTQVVLDLSGVDELDTAGIQL 60
          MPL     E++ ++T++G +TI+ AAE K + L  L   Q ++ LDLS V E+D+AG+QL
Sbjct: 1  MPLHIETGEEKTVVTIAGEMTIYTAAELK-QALTPLLYRQQELELDLSQVSEMDSAGLQL 59

Query: 61 LLLLRRELAAGGRQLEIGVYSPAVLATLDLLQLHERF 97
          LL  ++    GG  L + ++S AVL  L+L QL   F
Sbjct: 60 LLAAKKTALQGGYPLHLVMHSHAVLDALELCQLATFF 96