BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3583.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774049.1| chemotaxis histidine kinase [Herbaspirillum ...   185   2e-45
gb|EGH31872.1| CheW-like protein:ATP-binding region [Pseudomonas...   114   7e-24
gb|EGH23385.1| chemotaxis sensor histidine kinase CheA [Pseudomo...   111   3e-23
gb|EGH66592.1| chemotaxis sensor histidine kinase CheA [Pseudomo...   110   6e-23
gb|EGH71917.1| CheW-like protein:ATP-binding region [Pseudomonas...   110   9e-23

>ref|YP_003774049.1| chemotaxis histidine kinase [Herbaspirillum seropedicae SmR1]
 gb|ADJ62141.1| chemotaxis histidine kinase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 725

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 107/138 (77%), Positives = 118/138 (85%)

Query: 1   MKKDSARDAVVQEARELLVAMEAALLQIEMEGPSRDSINAIFRAAHTIKGSAGLFAFDSI 60
           M KDSAR A+VQEARELLVAMEAALLQ EMEGPSRDSI+AIFRAAHTIKGSAGLFAFDSI
Sbjct: 1   MSKDSARHAMVQEARELLVAMEAALLQTEMEGPSRDSIHAIFRAAHTIKGSAGLFAFDSI 60

Query: 61  VQFTHQVEHVLDLVREERLPLNAPMMSLLLQCGDYVSDLVDAIERNQEAEEPNAERRATL 120
           VQFTH +EHVL+ VREERL L++ +MSLLLQC DY+ +LVDAIER QEAEEPNAERRA L
Sbjct: 61  VQFTHHLEHVLERVREERLALDSHLMSLLLQCSDYIGELVDAIERGQEAEEPNAERRAAL 120

Query: 121 LAALAEVAQSASAPGEAA 138
           LA L  VA  +   G A+
Sbjct: 121 LAELDAVAAFSVDHGPAS 138


>gb|EGH31872.1| CheW-like protein:ATP-binding region [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 703

 Score =  114 bits (284), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 66/135 (48%), Positives = 93/135 (68%), Gaps = 2/135 (1%)

Query: 4   DSARDAVVQEARELLVAMEAALLQIEMEGPSRDSINAIFRAAHTIKGSAGLFAFDSIVQF 63
           D A+   + EARELL AME +LLQ+E E   +D+I A+FRAAHTIKGSAGLF    IV F
Sbjct: 6   DQAQQTFIVEARELLQAMEESLLQLESEPGDQDAIGAVFRAAHTIKGSAGLFGLTPIVSF 65

Query: 64  THQVEHVLDLVREERLPLNAPMMSLLLQCGDYVSDLVDAI-ERNQEAEEPNAERRATLLA 122
           TH VE VLD +RE  + +NA ++++LL+ GD++ +L+D +  R Q+ ++P  ER A L  
Sbjct: 66  THIVEDVLDRLREGSVSVNAELIAVLLKSGDHMLELIDVVASRGQQMQQPALEREAALRQ 125

Query: 123 ALAEVAQSASAPGEA 137
           AL +V Q+ ++ G A
Sbjct: 126 AL-QVFQAPASAGAA 139


>gb|EGH23385.1| chemotaxis sensor histidine kinase CheA [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 700

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/135 (48%), Positives = 88/135 (65%), Gaps = 5/135 (3%)

Query: 4   DSARDAVVQEARELLVAMEAALLQIEMEGPSRDSINAIFRAAHTIKGSAGLFAFDSIVQF 63
           D A+   + EARELL AME +LLQ+E E   +D+I A+FRAAHTIKGSAGLF    IV F
Sbjct: 6   DQAQQTFIVEARELLQAMEESLLQLESEPGDQDAIGAVFRAAHTIKGSAGLFGLTPIVSF 65

Query: 64  THQVEHVLDLVREERLPLNAPMMSLLLQCGDYVSDLVDAI-ERNQEAEEPNAERRATLLA 122
           TH VE VLD +RE  +P++A ++++LL+ GD++ +L+D +  R Q  + P  ER A L  
Sbjct: 66  THIVEDVLDRLREGSVPVDAGLIAVLLKSGDHMLELIDVVASRGQTLQPPALEREAALRQ 125

Query: 123 ALAEVAQSASAPGEA 137
           AL    Q    PG A
Sbjct: 126 AL----QVYQVPGNA 136


>gb|EGH66592.1| chemotaxis sensor histidine kinase CheA [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 700

 Score =  110 bits (276), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 66/137 (48%), Positives = 89/137 (64%), Gaps = 3/137 (2%)

Query: 4   DSARDAVVQEARELLVAMEAALLQIEMEGPSRDSINAIFRAAHTIKGSAGLFAFDSIVQF 63
           D A+   + EARELL AME +LLQ+E E   + +I AIFRAAHTIKGSAGLF    IV F
Sbjct: 6   DQAQQTFIVEARELLQAMEESLLQLESEPGDQSAIGAIFRAAHTIKGSAGLFGLTPIVSF 65

Query: 64  THQVEHVLDLVREERLPLNAPMMSLLLQCGDYVSDLVDAIERNQEAEEPNAERRATLLAA 123
           TH VE VLD +RE  + ++A ++++LL+ GD++ +L++ +    EA +P A  R    AA
Sbjct: 66  THIVEDVLDRLREGSVAVDAGLIAVLLKSGDHMLELIEVVASRGEALQPAALERE---AA 122

Query: 124 LAEVAQSASAPGEAAAE 140
           L +  Q   APG A AE
Sbjct: 123 LRQALQIYQAPGSAPAE 139


>gb|EGH71917.1| CheW-like protein:ATP-binding region [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 703

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 61/122 (50%), Positives = 84/122 (68%), Gaps = 1/122 (0%)

Query: 4   DSARDAVVQEARELLVAMEAALLQIEMEGPSRDSINAIFRAAHTIKGSAGLFAFDSIVQF 63
           D A+   + EARELL AME +LLQ+E E    D+I A+FRAAHTIKGSAGLF    IV F
Sbjct: 6   DQAQQTFIVEARELLQAMEESLLQLESEPGDLDAIGAVFRAAHTIKGSAGLFGLTPIVSF 65

Query: 64  THQVEHVLDLVREERLPLNAPMMSLLLQCGDYVSDLVDAI-ERNQEAEEPNAERRATLLA 122
           TH VE VLD +RE  + +NA ++++LL+ GD++ +L+D +  R ++ ++P  ER A L  
Sbjct: 66  THIVEDVLDRLREGSVSVNAELIAVLLKSGDHMLELIDVVASRGEQLQQPALEREAALRQ 125

Query: 123 AL 124
           AL
Sbjct: 126 AL 127