BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3582.p         (55 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774607.1| 50S ribosomal protein L33 [Herbaspirillum se...    68   4e-10
ref|YP_004028230.1| LSU ribosomal protein L33P [Burkholderia rhi...    67   7e-10
ref|YP_001354243.1| 50S ribosomal protein L33 [Janthinobacterium...    67   1e-09
ref|YP_004751887.1| 50S ribosomal protein L33p [Collimonas fungi...    67   1e-09
ref|ZP_08275499.1| LSU ribosomal protein L33p [Oxalobacteraceae ...    67   1e-09

>ref|YP_003774607.1| 50S ribosomal protein L33 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62699.1| 50S ribosomal subunit L33 protein [Herbaspirillum seropedicae
          SmR1]
          Length = 55

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55
          MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK
Sbjct: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55


>ref|YP_004028230.1| LSU ribosomal protein L33P [Burkholderia rhizoxinica HKI 454]
 emb|CBW74086.1| LSU ribosomal protein L33P [Burkholderia rhizoxinica HKI 454]
          Length = 55

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/55 (89%), Positives = 51/55 (92%)

Query: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55
          MAK  RDKIKLESTAGTGHFYTTTKNKRT PEK++IMKFDP ARKHVEYKETKIK
Sbjct: 1  MAKGARDKIKLESTAGTGHFYTTTKNKRTMPEKMAIMKFDPVARKHVEYKETKIK 55


>ref|YP_001354243.1| 50S ribosomal protein L33 [Janthinobacterium sp. Marseille]
 sp|A6T146|RL33_JANMA RecName: Full=50S ribosomal protein L33
 gb|ABR91647.1| 50S ribosomal protein L33 [Janthinobacterium sp. Marseille]
          Length = 55

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/55 (94%), Positives = 54/55 (98%)

Query: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55
          MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEK++IMKFDPK RKHVEYKETKIK
Sbjct: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKMAIMKFDPKVRKHVEYKETKIK 55


>ref|YP_004751887.1| 50S ribosomal protein L33p [Collimonas fungivorans Ter331]
 gb|AEK61064.1| LSU ribosomal protein L33p [Collimonas fungivorans Ter331]
          Length = 55

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/55 (98%), Positives = 55/55 (100%)

Query: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55
          MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEK+SIMKFDPKARKHVEYKETKIK
Sbjct: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKMSIMKFDPKARKHVEYKETKIK 55


>ref|ZP_08275499.1| LSU ribosomal protein L33p [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF31020.1| LSU ribosomal protein L33p [Oxalobacteraceae bacterium IMCC9480]
          Length = 55

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/55 (96%), Positives = 54/55 (98%)

Query: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKISIMKFDPKARKHVEYKETKIK 55
          MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEK+SIMKFDPK RKHVEYKETKIK
Sbjct: 1  MAKSGRDKIKLESTAGTGHFYTTTKNKRTTPEKMSIMKFDPKVRKHVEYKETKIK 55