BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3581.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774609.1| DNA repair RadC-like protein [Herbaspirillum... 305 4e-81 ref|YP_001100717.1| DNA repair protein RadC [Herminiimonas arsen... 249 2e-64 ref|YP_001900269.1| DNA repair protein RadC [Ralstonia pickettii... 241 7e-62 ref|YP_001354241.1| DNA repair protein RadC [Janthinobacterium s... 240 1e-61 ref|ZP_07676238.1| DNA repair protein RadC [Ralstonia sp. 5_7_47... 239 2e-61 >ref|YP_003774609.1| DNA repair RadC-like protein [Herbaspirillum seropedicae SmR1] gb|ADJ62701.1| DNA repair RadC-like protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 305 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 147/224 (65%), Positives = 182/224 (81%) Query: 3 MSIVDWPAAQRPRERLLELGPACLSDAELLAIFLRVGTPGKSVMELAMDLLHRFGSLEGL 62 M I DWP QRPRER+ + GPA LSDAELLAIFLRVG PGK+ +ELA + + RFGSL+G+ Sbjct: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 Query: 63 CKAVQREPSLGNGLGPAKCAQLSASLELAKRAIHSDLKQASALNSTRVVGEYLKLTFFGK 122 AV+R+ LG GLGPA C QL A LE+++RAIH+ ++Q LNSTR VG+YLKL + Sbjct: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRQRELLNSTRAVGDYLKLMLAHR 120 Query: 123 EHECFVALFLNMRNNLLGTEELFRGSLNQTTVHPREVVKMALRYNAASVIVAHNHPSGDP 182 E ECFVALFL++RN L+GTEELF+G+L Q+ V+PREV+K ALR+NAASVI+AHNHPSGDP Sbjct: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 Query: 183 RPSDSDLRLTKTLKQALELIEVELLDHIVVAGTRLYSFADHGKV 226 PSD DLRLT L +AL+++++ LLDH VVAGTRLYSFADHGK+ Sbjct: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 >ref|YP_001100717.1| DNA repair protein RadC [Herminiimonas arsenicoxydans] sp|A4G7V9|Y2468_HERAR RecName: Full=UPF0758 protein HEAR2468 emb|CAL62596.1| DNA repair protein RadC homolog [Herminiimonas arsenicoxydans] Length = 224 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 127/224 (56%), Positives = 166/224 (74%) Query: 3 MSIVDWPAAQRPRERLLELGPACLSDAELLAIFLRVGTPGKSVMELAMDLLHRFGSLEGL 62 M+I DWP QRPRERL+ G A LSDAELLA+FLRVG GKS ++L D++ FGSL GL Sbjct: 1 MAITDWPEEQRPRERLIRHGAAILSDAELLAVFLRVGVTGKSAVDLGRDMVAHFGSLNGL 60 Query: 63 CKAVQREPSLGNGLGPAKCAQLSASLELAKRAIHSDLKQASALNSTRVVGEYLKLTFFGK 122 A + S NGLGPAK AQL A LELA+R++ +L+ ALNS + V +YL+L G+ Sbjct: 61 FSATLNDFSKINGLGPAKYAQLQAVLELARRSLCEELQAGVALNSPQAVKQYLQLLLSGR 120 Query: 123 EHECFVALFLNMRNNLLGTEELFRGSLNQTTVHPREVVKMALRYNAASVIVAHNHPSGDP 182 +E FV LFL+++N L+ +E+FRG+L T+V+PRE+VK AL +NAASVI+AHNHPSG P Sbjct: 121 AYESFVILFLDVKNRLIVCDEMFRGTLTHTSVYPREIVKAALGHNAASVILAHNHPSGTP 180 Query: 183 RPSDSDLRLTKTLKQALELIEVELLDHIVVAGTRLYSFADHGKV 226 PS +D LT+ LKQAL LI+V +LDH VVAG ++YSFA+ G++ Sbjct: 181 EPSAADQTLTQALKQALMLIDVRVLDHFVVAGKQVYSFAEQGQL 224 >ref|YP_001900269.1| DNA repair protein RadC [Ralstonia pickettii 12J] sp|B2UAP0|Y2712_RALPJ RecName: Full=UPF0758 protein Rpic_2712 gb|ACD27837.1| DNA repair protein RadC [Ralstonia pickettii 12J] Length = 224 Score = 241 bits (614), Expect = 7e-62, Method: Composition-based stats. Identities = 121/224 (54%), Positives = 163/224 (72%) Query: 3 MSIVDWPAAQRPRERLLELGPACLSDAELLAIFLRVGTPGKSVMELAMDLLHRFGSLEGL 62 M+IVDWPA +RPRE+LL GPA LSDAELLAIFLRVG PGKS ++LA +LL FGSL L Sbjct: 1 MAIVDWPAHERPREKLLAHGPAALSDAELLAIFLRVGVPGKSAVDLARELLAHFGSLARL 60 Query: 63 CKAVQREPSLGNGLGPAKCAQLSASLELAKRAIHSDLKQASALNSTRVVGEYLKLTFFGK 122 C A Q+E S NG+GPAK AQL A LE+A+RA+ D Q S + V ++L+LT + Sbjct: 61 CHASQQEFSSINGMGPAKYAQLHALLEVARRALKEDFTQGQTFESAQSVKDFLRLTLGHR 120 Query: 123 EHECFVALFLNMRNNLLGTEELFRGSLNQTTVHPREVVKMALRYNAASVIVAHNHPSGDP 182 HE F FL++R+ L+ EELFRG+L + V+PRE+ K AL +NAA+VI+AHNHP+G+ Sbjct: 121 PHEVFACFFLDVRHRLIAWEELFRGTLTEARVYPREIAKRALHHNAAAVILAHNHPTGNT 180 Query: 183 RPSDSDLRLTKTLKQALELIEVELLDHIVVAGTRLYSFADHGKV 226 PS+SD+ LT+ L +AL +++V +LDH++V +Y F +HGK+ Sbjct: 181 EPSESDVILTRELCRALAMLDVIVLDHMIVGRNHVYGFLEHGKM 224 >ref|YP_001354241.1| DNA repair protein RadC [Janthinobacterium sp. Marseille] sp|A6T144|Y2551_JANMA RecName: Full=UPF0758 protein mma_2551 gb|ABR88373.1| DNA repair protein [Janthinobacterium sp. Marseille] Length = 224 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 125/224 (55%), Positives = 162/224 (72%) Query: 3 MSIVDWPAAQRPRERLLELGPACLSDAELLAIFLRVGTPGKSVMELAMDLLHRFGSLEGL 62 M+I DWP RPRERL++ G A L+DAELLAIFLR+G GKS ++LA D+L+ FGSL L Sbjct: 1 MAISDWPEQDRPRERLIKHGAAILTDAELLAIFLRLGVAGKSAVDLARDMLNHFGSLHAL 60 Query: 63 CKAVQREPSLGNGLGPAKCAQLSASLELAKRAIHSDLKQASALNSTRVVGEYLKLTFFGK 122 A + S NGLGPAK AQL A LEL +R++ +L+ +LNS + V +YL+L GK Sbjct: 61 FSASLDDFSQLNGLGPAKYAQLQAVLELTRRSLSEELQIGISLNSPQAVKKYLQLLLGGK 120 Query: 123 EHECFVALFLNMRNNLLGTEELFRGSLNQTTVHPREVVKMALRYNAASVIVAHNHPSGDP 182 +E F LFL+++N L+ EELFRG+L T+V+PRE+VK AL +NAASVI+AHNHPSG Sbjct: 121 PYEAFAVLFLDVKNRLIACEELFRGTLTHTSVYPREIVKEALTHNAASVILAHNHPSGSS 180 Query: 183 RPSDSDLRLTKTLKQALELIEVELLDHIVVAGTRLYSFADHGKV 226 PS +D LT+ LKQAL LI+V +LDH VV G +YSFA+HG + Sbjct: 181 EPSAADHSLTQALKQALALIDVRVLDHFVVGGKNVYSFAEHGHL 224 >ref|ZP_07676238.1| DNA repair protein RadC [Ralstonia sp. 5_7_47FAA] gb|EFP65576.1| DNA repair protein RadC [Ralstonia sp. 5_7_47FAA] Length = 224 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 119/224 (53%), Positives = 163/224 (72%) Query: 3 MSIVDWPAAQRPRERLLELGPACLSDAELLAIFLRVGTPGKSVMELAMDLLHRFGSLEGL 62 M+I+DWPA +RPRE+LL GPA LSDAELLAIFLRVG PGKS ++LA +LL FGSL L Sbjct: 1 MAIIDWPAHERPREKLLAHGPAALSDAELLAIFLRVGMPGKSAVDLARELLTHFGSLARL 60 Query: 63 CKAVQREPSLGNGLGPAKCAQLSASLELAKRAIHSDLKQASALNSTRVVGEYLKLTFFGK 122 C A Q+E S NG+GPAK AQL A LE+A+RA+ D +S + V +L+LT + Sbjct: 61 CHASQQEFSSINGMGPAKYAQLHALLEVARRALKEDFTHGQTFDSPQSVKNFLRLTLGHR 120 Query: 123 EHECFVALFLNMRNNLLGTEELFRGSLNQTTVHPREVVKMALRYNAASVIVAHNHPSGDP 182 HE F FL++R+ L+ EELFRG+L + V+PRE+ K AL +NAA+VI+AHNHP+G+ Sbjct: 121 PHEVFACFFLDVRHRLIAWEELFRGTLTEARVYPREIAKRALHHNAAAVILAHNHPTGNT 180 Query: 183 RPSDSDLRLTKTLKQALELIEVELLDHIVVAGTRLYSFADHGKV 226 PS+SD+ LT+ L++AL +++V +LDH++V +Y F +HGK+ Sbjct: 181 EPSESDVILTRELRRALAMLDVIVLDHMIVGRNHVYGFLEHGKM 224