BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3578.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773611.1| branched-chain amino acid ABC transporter pe... 444 e-122 ref|YP_004751892.1| high-affinity branched-chain amino acid tran... 439 e-121 ref|YP_001100714.1| high-affinity branched-chain amino acid ABC ... 429 e-118 ref|YP_001354238.1| branched chain amino acid ABC transporter pe... 420 e-115 ref|ZP_08275504.1| High-affinity branched-chain amino acid trans... 405 e-111 >ref|YP_003773611.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] ref|YP_003774613.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61703.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] gb|ADJ62705.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 291/309 (94%), Positives = 303/309 (98%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSILKLVQQV 60 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLS+LK+VQQV Sbjct: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60 Query: 61 APDLPGIVKLIIAIVGAIPVCVIVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 AP LPGIV+L+IAIVGAIPVC++VSLLIERIAYRPLRNAPRLAPLITAIGVSILLQT AM Sbjct: 61 APGLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTLAM 120 Query: 121 MIWGRSPLPFPQIMPSTPVNIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMRAT 180 MIWGRSPLPFPQ+MPS PV+IAGALISPTQIMLL LA+ AM+GLVLIVEKTKMGRAMRAT Sbjct: 121 MIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLLALAVLAMVGLVLIVEKTKMGRAMRAT 180 Query: 181 AENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240 AENPRIAGLMGVDAN+VI+VTFAIGA LAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV Sbjct: 181 AENPRIAGLMGVDANKVIVVTFAIGAGLAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240 Query: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPSGI 300 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPSGI Sbjct: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPSGI 300 Query: 301 MGERVADRA 309 MGERVADRA Sbjct: 301 MGERVADRA 309 >ref|YP_004751892.1| high-affinity branched-chain amino acid transport system permease [Collimonas fungivorans Ter331] gb|AEK61069.1| High-affinity branched-chain amino acid transport system permease protein [Collimonas fungivorans Ter331] Length = 309 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 281/309 (90%), Positives = 300/309 (97%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSILKLVQQV 60 MDIFIQQ+INGLVLGSMYALIALGYTMVYGVLNLINFAHGDILM+GAMVGLSILKL+Q V Sbjct: 1 MDIFIQQVINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMIGAMVGLSILKLLQHV 60 Query: 61 APDLPGIVKLIIAIVGAIPVCVIVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 AP LPGIV+L IAI+GAIPVCVI+SL+IER+AYRPLRNAPRLAPLITAIGVSILLQTFAM Sbjct: 61 APGLPGIVQLAIAIIGAIPVCVIISLIIERVAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 Query: 121 MIWGRSPLPFPQIMPSTPVNIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMRAT 180 MIWGRSPLP PQ+MPS PV+I GALISPTQIMLLILA A+M+GLVL+VEKTKMGRAMRAT Sbjct: 121 MIWGRSPLPVPQVMPSDPVHIFGALISPTQIMLLILAAASMVGLVLLVEKTKMGRAMRAT 180 Query: 181 AENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240 AENPR+AGLMGVD+NRVI++TFAIGAALAA+AGVMW ANYS+AQFAMGFVPGLKAFSAAV Sbjct: 181 AENPRVAGLMGVDSNRVIVMTFAIGAALAAVAGVMWGANYSSAQFAMGFVPGLKAFSAAV 240 Query: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPSGI 300 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNF GSNYQDIFAFIVLIIVLTLRPSGI Sbjct: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFFGSNYQDIFAFIVLIIVLTLRPSGI 300 Query: 301 MGERVADRA 309 MGERVADRA Sbjct: 301 MGERVADRA 309 >ref|YP_001100714.1| high-affinity branched-chain amino acid ABC transporter membrane protein [Herminiimonas arsenicoxydans] emb|CAL62593.1| Putative high-affinity branched-chain amino acid transport system permease protein BraD/LivH-like [Herminiimonas arsenicoxydans] Length = 309 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 269/309 (87%), Positives = 295/309 (95%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSILKLVQQV 60 MDIFIQQIINGLVLGSMYAL+ALGYTMVYGVLNLINFAHGD+LM+GAM GL+ILK++ V Sbjct: 1 MDIFIQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTV 60 Query: 61 APDLPGIVKLIIAIVGAIPVCVIVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 APDLPGIVKLIIAI+GAIPVCV V++LIER+AYR LRNAPRLAPLITAIGVSILLQTFAM Sbjct: 61 APDLPGIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTFAM 120 Query: 121 MIWGRSPLPFPQIMPSTPVNIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMRAT 180 MIWGRSPLPFPQ+MP P++I GALISPTQ+MLLILA A+M+ L L++EKTK+GRAMRAT Sbjct: 121 MIWGRSPLPFPQVMPGEPLHILGALISPTQVMLLILAAASMLLLALLIEKTKLGRAMRAT 180 Query: 181 AENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240 AENPR+AGLMGVD+NRVI++TF IGA LAAIAGVMWAANYS+AQFAMGFVPGLKAFSAAV Sbjct: 181 AENPRVAGLMGVDSNRVIVMTFVIGATLAAIAGVMWAANYSSAQFAMGFVPGLKAFSAAV 240 Query: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPSGI 300 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTG FLGS+YQDIFAF+VLIIVLTLRPSGI Sbjct: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRPSGI 300 Query: 301 MGERVADRA 309 MGERVADRA Sbjct: 301 MGERVADRA 309 >ref|YP_001354238.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] gb|ABR88816.1| Branched-chain amino acid ABC-type transport system, permease components [Janthinobacterium sp. Marseille] Length = 309 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 267/309 (86%), Positives = 293/309 (94%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSILKLVQQV 60 MDIFIQQIINGLVLGSMYAL+ALGYTMVYGVLNLINFAHGD+LM+GAM GL+ILK++ V Sbjct: 1 MDIFIQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAMAGLTILKMLNTV 60 Query: 61 APDLPGIVKLIIAIVGAIPVCVIVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 APDLPGIVKLIIAI+GAIPVCV V++LIER+AYR LRNAPRLAPLITAIGVSILLQT AM Sbjct: 61 APDLPGIVKLIIAILGAIPVCVAVNVLIERVAYRRLRNAPRLAPLITAIGVSILLQTLAM 120 Query: 121 MIWGRSPLPFPQIMPSTPVNIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMRAT 180 MIWGRSP+PFPQ MP+ P++I GALISPTQ+MLLILA AM LVL++EKT+MGRAMRAT Sbjct: 121 MIWGRSPIPFPQEMPTEPLHIMGALISPTQVMLLILAAVAMGLLVLLIEKTRMGRAMRAT 180 Query: 181 AENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240 +ENPR+AGLMGVD+NRVI++TFAIGA LAAIAGVMWAANYS+AQFAMGFVPGLKAFSAAV Sbjct: 181 SENPRVAGLMGVDSNRVIVMTFAIGAILAAIAGVMWAANYSSAQFAMGFVPGLKAFSAAV 240 Query: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPSGI 300 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTG FLGS+YQDIFAF+VLIIVLTLRPSGI Sbjct: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRPSGI 300 Query: 301 MGERVADRA 309 MGERV DRA Sbjct: 301 MGERVPDRA 309 >ref|ZP_08275504.1| High-affinity branched-chain amino acid transport system permease protein LivH [Oxalobacteraceae bacterium IMCC9480] gb|EGF31025.1| High-affinity branched-chain amino acid transport system permease protein LivH [Oxalobacteraceae bacterium IMCC9480] Length = 309 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 260/309 (84%), Positives = 289/309 (93%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSILKLVQQV 60 MD FIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGD+LM+GAM G++ILK+VQ V Sbjct: 1 MDTFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDVLMIGAMAGVTILKIVQTV 60 Query: 61 APDLPGIVKLIIAIVGAIPVCVIVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 APDLPG+VK++IAI GAIP+CV V+LLIER+AY LRNAPRLAPLITAIGVSILLQTFAM Sbjct: 61 APDLPGVVKILIAIGGAIPICVAVNLLIERVAYPRLRNAPRLAPLITAIGVSILLQTFAM 120 Query: 121 MIWGRSPLPFPQIMPSTPVNIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMRAT 180 MIWGRSP+ FPQ++ + +I GALISPTQ+MLL+LA +M GLVL+VEKTKMGRAMRAT Sbjct: 121 MIWGRSPVAFPQVISAESYHILGALISPTQVMLLVLAGISMFGLVLLVEKTKMGRAMRAT 180 Query: 181 AENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240 AENPR+AGLMGVD+N VI++TFAIGAALAA+AGVMW A Y++AQFAMGFVPGLKAFSAAV Sbjct: 181 AENPRVAGLMGVDSNAVIVMTFAIGAALAAVAGVMWGATYASAQFAMGFVPGLKAFSAAV 240 Query: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPSGI 300 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTG FLGS+YQDIFAF+VLIIVLTLRPSGI Sbjct: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRPSGI 300 Query: 301 MGERVADRA 309 MGERVADRA Sbjct: 301 MGERVADRA 309