BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3577.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773612.1| branched-chain amino acid ABC transporter pe... 691 0.0 ref|YP_003774614.1| branched-chain amino acid ABC transporter pe... 674 0.0 ref|YP_004751893.1| branched-chain amino acid transport system p... 604 e-171 ref|ZP_08275505.1| Branched-chain amino acid transport system pe... 584 e-165 ref|YP_001354237.1| ABC-type branched-chain amino acid transport... 570 e-160 >ref|YP_003773612.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61704.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 377/404 (93%), Positives = 395/404 (97%) Query: 1 MALMTFDMKRNPQQARFSLLALLALMIIFPMIAQHFGNSWVRIMDMALLYIMLALGLNVV 60 MAL+TFDMKRNPQQAR SLL LLALMI+FP +AQ FGNSWVRIMD+ALLYIMLALGLNVV Sbjct: 1 MALLTFDMKRNPQQARISLLLLLALMIVFPFVAQQFGNSWVRIMDVALLYIMLALGLNVV 60 Query: 61 VGFAGLLDLGYIAFYAIGAYTAGLLASPQFAAVIESFINTYPAIGNFLVWLCGPQIVQNG 120 VGFAGLLDLGYIAFYAIGAY+AGLLASPQFAAVIESF+NTYP++GNFLVWLCGP+IVQNG Sbjct: 61 VGFAGLLDLGYIAFYAIGAYSAGLLASPQFAAVIESFVNTYPSVGNFLVWLCGPEIVQNG 120 Query: 121 IHLSLWLIVPISGVLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT 180 IHLSLWLIVPIS LAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT Sbjct: 121 IHLSLWLIVPISAFLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT 180 Query: 181 NGPQGINLIDPIRVFGVSLAGEPGSGSMLKVFGMNLPSVNAYYYLFLVLCIFVIFFSSRL 240 NGPQGINLIDPI+VFGVSLAGEPGSGSM+KVFGM++PSVNAYY+LFL+LCI VIFFS RL Sbjct: 181 NGPQGINLIDPIKVFGVSLAGEPGSGSMVKVFGMSMPSVNAYYFLFLLLCIGVIFFSVRL 240 Query: 241 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESF 300 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESF Sbjct: 241 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESF 300 Query: 301 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFGKVWIDAEVLR 360 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEP+QMAIFGKVWIDAEVLR Sbjct: 301 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMAIFGKVWIDAEVLR 360 Query: 361 QLLYGLAMVIIMLTRPAGLWPSPRHEDRPEVDHTKVGTTGEVKA 404 QLLYGLAMV+IMLTRPAGLWPSPRHEDRPE DHT+VGTTGEVKA Sbjct: 361 QLLYGLAMVVIMLTRPAGLWPSPRHEDRPEADHTQVGTTGEVKA 404 >ref|YP_003774614.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62706.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 377/404 (93%), Positives = 396/404 (98%) Query: 1 MALMTFDMKRNPQQARFSLLALLALMIIFPMIAQHFGNSWVRIMDMALLYIMLALGLNVV 60 MAL+TFDMKRNPQQAR SLL LLALMI+FP +AQ FGNSWVRIMD+ALLYIMLALGLNVV Sbjct: 1 MALLTFDMKRNPQQARISLLLLLALMIVFPFVAQQFGNSWVRIMDVALLYIMLALGLNVV 60 Query: 61 VGFAGLLDLGYIAFYAIGAYTAGLLASPQFAAVIESFINTYPAIGNFLVWLCGPQIVQNG 120 VGFAGLLDLGYIAFYAIGAY+AGLLASPQFAAVIESF+NTYP++GNFLVWLCGP+IVQNG Sbjct: 61 VGFAGLLDLGYIAFYAIGAYSAGLLASPQFAAVIESFVNTYPSVGNFLVWLCGPEIVQNG 120 Query: 121 IHLSLWLIVPISGVLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT 180 IHLSLWLIVPIS +LAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT Sbjct: 121 IHLSLWLIVPISALLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNIT 180 Query: 181 NGPQGINLIDPIRVFGVSLAGEPGSGSMLKVFGMNLPSVNAYYYLFLVLCIFVIFFSSRL 240 NGPQGINLIDPI+VFGVSLAGEPGSGSM+KVFGM++PSVNAYY+LFL+LCI VIFFS RL Sbjct: 181 NGPQGINLIDPIKVFGVSLAGEPGSGSMVKVFGMSMPSVNAYYFLFLLLCIGVIFFSVRL 240 Query: 241 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESF 300 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESF Sbjct: 241 QDSRLGRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESF 300 Query: 301 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFGKVWIDAEVLR 360 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEP+QMAIFGKVWIDAEVLR Sbjct: 301 SLTESIAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPVQMAIFGKVWIDAEVLR 360 Query: 361 QLLYGLAMVIIMLTRPAGLWPSPRHEDRPEVDHTKVGTTGEVKA 404 QLLYGLAMV+IMLTRPAGLWPSPRHEDRPE DHT+VGTTGEVKA Sbjct: 361 QLLYGLAMVVIMLTRPAGLWPSPRHEDRPEADHTQVGTTGEVKA 404 >ref|YP_004751893.1| branched-chain amino acid transport system permease [Collimonas fungivorans Ter331] gb|AEK61070.1| Branched-chain amino acid transport system permease protein [Collimonas fungivorans Ter331] Length = 404 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 328/400 (82%), Positives = 361/400 (90%), Gaps = 1/400 (0%) Query: 6 FDMKRNPQQARFSLLALLALMIIFPMIAQHFGNSWVRIMDMALLYIMLALGLNVVVGFAG 65 FD K+NP +A SL+AL L +IFP IA +FGNSWVRIMD ALLYIMLALGLN+VVGFAG Sbjct: 5 FDTKKNPTKAYTSLVALAILFMIFPFIASNFGNSWVRIMDFALLYIMLALGLNIVVGFAG 64 Query: 66 LLDLGYIAFYAIGAYTAGLLASPQFAAVIESFINTYPAIGNFLVWLCGPQIVQNGIHLSL 125 LLDLGYIAFYAIGAY GLLASPQFA+V+ESF+NTYPAIGNFLV +CGP+IVQNGIHLSL Sbjct: 65 LLDLGYIAFYAIGAYMTGLLASPQFASVLESFVNTYPAIGNFLVMVCGPEIVQNGIHLSL 124 Query: 126 WLIVPISGVLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG 185 W+IVP+ LA LFGA+LGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG Sbjct: 125 WVIVPLGAALAGLFGAILGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG 184 Query: 186 INLIDPIRVFGVSLAGEPGSGSMLKVFGMNLPSVNAYYYLFLVLCIFVIFFSSRLQDSRL 245 INLIDPIR+FGVSLAGE GS + + V G +PSVNAYY+LFLVLC+ +IF S RLQ+SRL Sbjct: 185 INLIDPIRIFGVSLAGERGSSATVYVAGFGMPSVNAYYFLFLVLCMAIIFISIRLQNSRL 244 Query: 246 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSLTES 305 GRAWVAIREDEIAAKAMGINTRN+KLLAF+MGASFGGVAGAMF +FQGFVSPESFSLTES Sbjct: 245 GRAWVAIREDEIAAKAMGINTRNMKLLAFSMGASFGGVAGAMFASFQGFVSPESFSLTES 304 Query: 306 IAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFGKVWIDAEVLRQLLYG 365 IAVLAMVVLGG+GHIPGVVLGG++LAALPEVLRH VEP+QMA+FGKV IDAEVLRQLLYG Sbjct: 305 IAVLAMVVLGGMGHIPGVVLGGILLAALPEVLRHTVEPMQMAVFGKVLIDAEVLRQLLYG 364 Query: 366 LAMVIIMLTRPAGLWPSPRHEDRPEVD-HTKVGTTGEVKA 404 LAMV+IMLTRPAGLWPSP+HEDRP+ D TG VKA Sbjct: 365 LAMVVIMLTRPAGLWPSPKHEDRPDADIDNPTAPTGVVKA 404 >ref|ZP_08275505.1| Branched-chain amino acid transport system permease protein livM [Oxalobacteraceae bacterium IMCC9480] gb|EGF31026.1| Branched-chain amino acid transport system permease protein livM [Oxalobacteraceae bacterium IMCC9480] Length = 404 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 311/390 (79%), Positives = 348/390 (89%) Query: 6 FDMKRNPQQARFSLLALLALMIIFPMIAQHFGNSWVRIMDMALLYIMLALGLNVVVGFAG 65 FD K NP++A + + ++I+FP IAQ++GNSWVRIMD ALLYIMLALGLN+VVGFAG Sbjct: 5 FDTKTNPRKAYIGMGIIALIVIVFPFIAQNYGNSWVRIMDFALLYIMLALGLNIVVGFAG 64 Query: 66 LLDLGYIAFYAIGAYTAGLLASPQFAAVIESFINTYPAIGNFLVWLCGPQIVQNGIHLSL 125 LLDLGYIAFYA+GAY LLASPQFA V+ESF+N YPAIGN LV L GP+I ++GIHLS+ Sbjct: 65 LLDLGYIAFYALGAYLTALLASPQFAVVLESFVNQYPAIGNALVALFGPEIREHGIHLSI 124 Query: 126 WLIVPISGVLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG 185 W IVP+S + A +FGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLN PVNITNGPQG Sbjct: 125 WFIVPLSALFAGVFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNGPVNITNGPQG 184 Query: 186 INLIDPIRVFGVSLAGEPGSGSMLKVFGMNLPSVNAYYYLFLVLCIFVIFFSSRLQDSRL 245 IN+IDPIR+FGVSLAGEPGS + L ++PSVNAYYY FL LCI +IF S RLQDSRL Sbjct: 185 INMIDPIRIFGVSLAGEPGSRANLVFGSFSMPSVNAYYYFFLALCIAIIFVSVRLQDSRL 244 Query: 246 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSLTES 305 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAG+MF +FQGFVSPESFSLTES Sbjct: 245 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGSMFASFQGFVSPESFSLTES 304 Query: 306 IAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFGKVWIDAEVLRQLLYG 365 IAVLAMVVLGG+GHIPGV+LGG+ILAALPEVLRH VEP+QMAIFGKVWIDAEVLRQLLYG Sbjct: 305 IAVLAMVVLGGMGHIPGVILGGIILAALPEVLRHTVEPIQMAIFGKVWIDAEVLRQLLYG 364 Query: 366 LAMVIIMLTRPAGLWPSPRHEDRPEVDHTK 395 LAMV+IML+RPAGLWP+P+HEDRP+ D K Sbjct: 365 LAMVVIMLSRPAGLWPAPKHEDRPDGDIDK 394 >ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR89269.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 570 bits (1470), Expect = e-160, Method: Composition-based stats. Identities = 310/399 (77%), Positives = 349/399 (87%) Query: 6 FDMKRNPQQARFSLLALLALMIIFPMIAQHFGNSWVRIMDMALLYIMLALGLNVVVGFAG 65 FD K NP++A LL +LA+ ++FP IAQ+FGNSWVRIMD ALLYIMLALGLNVVVGFAG Sbjct: 5 FDTKNNPRKAYSGLLLILAIALVFPFIAQNFGNSWVRIMDFALLYIMLALGLNVVVGFAG 64 Query: 66 LLDLGYIAFYAIGAYTAGLLASPQFAAVIESFINTYPAIGNFLVWLCGPQIVQNGIHLSL 125 LLDLGYIAFYAIGAY LLASPQFA V+ESF+N YPAIG L+W+ GP+I QNGIHLSL Sbjct: 65 LLDLGYIAFYAIGAYLTALLASPQFAVVLESFVNQYPAIGETLLWVFGPEIAQNGIHLSL 124 Query: 126 WLIVPISGVLAALFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNAPVNITNGPQG 185 W IVP++ ++A FGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLN PVNITNGPQG Sbjct: 125 WAIVPLAALVAGFFGALLGAPTLKLRGDYLAIVTLGFGEIIRIFMNNLNGPVNITNGPQG 184 Query: 186 INLIDPIRVFGVSLAGEPGSGSMLKVFGMNLPSVNAYYYLFLVLCIFVIFFSSRLQDSRL 245 IN+IDPIR+FGVSL GE GS + + + +PSVNAYY+LFL LCI +IF S RLQ+SRL Sbjct: 185 INMIDPIRIFGVSLNGEAGSRATVMIGDYAMPSVNAYYFLFLFLCIAIIFISVRLQNSRL 244 Query: 246 GRAWVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGVAGAMFGAFQGFVSPESFSLTES 305 GRA+VAIREDEIAAKAMGINTRNVKLLAFAMGASFGG+AGAMF +FQGFVSPESFSLTES Sbjct: 245 GRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGIAGAMFASFQGFVSPESFSLTES 304 Query: 306 IAVLAMVVLGGIGHIPGVVLGGVILAALPEVLRHVVEPLQMAIFGKVWIDAEVLRQLLYG 365 IAVLAMVVLGG+GHIPGVVLGG+ILAALPEVLRHVVEPLQ ++FG+V IDAEVLRQLLYG Sbjct: 305 IAVLAMVVLGGMGHIPGVVLGGIILAALPEVLRHVVEPLQQSLFGEVLIDAEVLRQLLYG 364 Query: 366 LAMVIIMLTRPAGLWPSPRHEDRPEVDHTKVGTTGEVKA 404 LAMV+IML RP+GLWPSP+ EDRP D+ + +V A Sbjct: 365 LAMVLIMLYRPSGLWPSPKSEDRPTADNDTAKKSTDVVA 403