BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3575.p         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773614.1| branched-chain amino acid ABC transporter AT...   190   1e-46
ref|YP_004751895.1| branched-chain amino acid transport ATP-bind...   168   3e-40
ref|YP_001354235.1| ABC-type branched-chain amino acid transport...   165   3e-39
ref|YP_001100711.1| high-affinity branched-chain amino acid ABC ...   164   7e-39
gb|ABW82968.1| ABC transporter [uncultured bacterium pEAF66]          159   2e-37

>ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum
           seropedicae SmR1]
 ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61706.1| ABC-type branched-chain amino acid transport system, ATPase
           component protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62708.1| ABC-type branched-chain amino acid transport system, ATPase
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  190 bits (482), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 96/106 (90%), Positives = 100/106 (94%)

Query: 1   MTTNILKVDQLSVAYGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITGTLPDSKV 60
           MTTNILKV QLSVAYGGI+AVKGI LEVN+GELVTLIGANGAGKTTTLKAITGTLP S+V
Sbjct: 1   MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60

Query: 61  GGHISYLGQPLKGQSSFELVKDKLAMVPEGRGVFTRMSIQENLLMG 106
            GHI YLGQPLKG+ SFELVKDKLAMVPEGRGVFTRMSIQENLLMG
Sbjct: 61  EGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMG 106


>ref|YP_004751895.1| branched-chain amino acid transport ATP-binding protein [Collimonas
           fungivorans Ter331]
 gb|AEK61072.1| Branched-chain amino acid transport ATP-binding protein [Collimonas
           fungivorans Ter331]
          Length = 240

 Score =  168 bits (426), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/106 (81%), Positives = 93/106 (87%)

Query: 1   MTTNILKVDQLSVAYGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITGTLPDSKV 60
           M TNILKV+ L VAYGGI+AVKGI+LEVN+GELVTLIGANGAGKTTTLKAITGTLP  KV
Sbjct: 1   MATNILKVENLKVAYGGIQAVKGINLEVNEGELVTLIGANGAGKTTTLKAITGTLPQCKV 60

Query: 61  GGHISYLGQPLKGQSSFELVKDKLAMVPEGRGVFTRMSIQENLLMG 106
            G + YLG+  KG +SF LVK KLAMVPEGRGVFTRMSIQENLLMG
Sbjct: 61  EGEMHYLGEHTKGMTSFNLVKQKLAMVPEGRGVFTRMSIQENLLMG 106


>ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding
           protein [Janthinobacterium sp. Marseille]
 gb|ABR88852.1| ABC-type branched-chain amino acid transport system ATP-binding
           protein [Janthinobacterium sp. Marseille]
          Length = 241

 Score =  165 bits (418), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/106 (77%), Positives = 92/106 (86%)

Query: 1   MTTNILKVDQLSVAYGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITGTLPDSKV 60
           MT  +LK+  L VAYGGI+AVKG+ LEV+ GEL+TLIGANGAGKTTTLKAITGTLP+ +V
Sbjct: 1   MTDTVLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRV 60

Query: 61  GGHISYLGQPLKGQSSFELVKDKLAMVPEGRGVFTRMSIQENLLMG 106
            GHI Y GQP+KG  SFELV+ KLAMVPEGRGVFTRMSIQENLLMG
Sbjct: 61  EGHIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMG 106


>ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding
           protein [Herminiimonas arsenicoxydans]
 emb|CAL62590.1| High-affinity branched-chain amino acid transport ATP-binding
           protein [Herminiimonas arsenicoxydans]
          Length = 241

 Score =  164 bits (415), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 82/106 (77%), Positives = 91/106 (85%)

Query: 1   MTTNILKVDQLSVAYGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITGTLPDSKV 60
           MTT +LK+  L VAYGGI+AVKGI L+V  GEL+TLIGANGAGKTTTLKAITGTLP+ +V
Sbjct: 1   MTTTVLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTLPECRV 60

Query: 61  GGHISYLGQPLKGQSSFELVKDKLAMVPEGRGVFTRMSIQENLLMG 106
            GHI Y GQ +KG  SFELV+ KLAMVPEGRGVFTRMSIQENLLMG
Sbjct: 61  DGHIEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMG 106


>gb|ABW82968.1| ABC transporter [uncultured bacterium pEAF66]
          Length = 240

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 84/106 (79%), Positives = 88/106 (83%)

Query: 1   MTTNILKVDQLSVAYGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITGTLPDSKV 60
           M+  ILK+  L VAYGGIKAVKGI LEVN GELVTLIGANGAGKTTTLKAITGTLP   V
Sbjct: 1   MSETILKIQGLRVAYGGIKAVKGIDLEVNKGELVTLIGANGAGKTTTLKAITGTLPPCSV 60

Query: 61  GGHISYLGQPLKGQSSFELVKDKLAMVPEGRGVFTRMSIQENLLMG 106
            G ISY GQ LK   SFELV+ KLAMVPEGRGVFTRMSIQENL+MG
Sbjct: 61  EGVISYKGQSLKDAKSFELVQRKLAMVPEGRGVFTRMSIQENLMMG 106