BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3573.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774618.1| hypothetical protein Hsero_1193 [Herbaspiril...   107   5e-22

>ref|YP_003774618.1| hypothetical protein Hsero_1193 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62710.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 171

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/65 (84%), Positives = 60/65 (92%)

Query: 42  MNKKTITGQFNFALGKFQESVGSVLGNVQLQRAAQRRQMDGRIMHAVGEAQDLIKRSLRQ 101
           MNKKTI GQ+  ALGKFQE++G+ LGNV LQRAAQRRQMDGRIMHAVG+AQDLIKRSLRQ
Sbjct: 107 MNKKTIHGQWQLALGKFQENLGAALGNVNLQRAAQRRQMDGRIMHAVGQAQDLIKRSLRQ 166

Query: 102 RAGSL 106
           RAGSL
Sbjct: 167 RAGSL 171