BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3568.p         (95 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773615.1| bifunctional proline dehydrogenase/proline o...    89   3e-16
ref|YP_004755062.1| multifunctional transcriptional repressor of...    74   9e-12
ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-...    69   2e-10
ref|YP_001100402.1| multifunctional: transcriptional repressor o...    69   3e-10
ref|ZP_08275027.1| Proline dehydrogenase [Oxalobacteraceae bacte...    67   9e-10

>ref|YP_003773615.1| bifunctional proline dehydrogenase/proline oxidase
            delta-1-pyrroline-5-carboxylate dehydrogenase
            [Herbaspirillum seropedicae SmR1]
 gb|ADJ61707.1| bifunctional enzyme: proline dehydrogenase/proline oxidase
            delta-1-pyrroline-5-carboxylate dehydrogenase protein
            [Herbaspirillum seropedicae SmR1]
          Length = 1230

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/48 (89%), Positives = 44/48 (91%)

Query: 48   AEREGALVPLILCSEDGAIPLWRLLAERALCVNTTAAGGNASLMTISV 95
            A REGALVPLILC ED  IPLWRLLAERALC+NTTAAGGNASLMTISV
Sbjct: 1183 AAREGALVPLILCGEDTTIPLWRLLAERALCINTTAAGGNASLMTISV 1230


>ref|YP_004755062.1| multifunctional transcriptional repressor of proline
            utilization/proline dehydrogenase/pyrroline-5-carboxylate
            dehydrogenase [Collimonas fungivorans Ter331]
 gb|AEK64239.1| multifunctional: transcriptional repressor of proline utilization;
            proline dehydrogenase; pyrroline-5-carboxylate
            dehydrogenase [Collimonas fungivorans Ter331]
          Length = 1207

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 40/46 (86%)

Query: 48   AEREGALVPLILCSEDGAIPLWRLLAERALCVNTTAAGGNASLMTI 93
             E+ GALVPL+  SE  +IPLWRLLAERA+CVNTTAAGGNASLMT+
Sbjct: 1160 GEQSGALVPLLETSEYASIPLWRLLAERAVCVNTTAAGGNASLMTL 1205


>ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate
            dehydrogenase [Janthinobacterium sp. Marseille]
 gb|ABR89114.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate
            dehydrogenase [Janthinobacterium sp. Marseille]
          Length = 1242

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 38/47 (80%)

Query: 48   AEREGALVPLILCSEDGAIPLWRLLAERALCVNTTAAGGNASLMTIS 94
            A R GA+V ++  S   AIPLWRL+ ERALC+NTTAAGGNASLMTIS
Sbjct: 1195 AARRGAIVSVVSTSFPHAIPLWRLVTERALCINTTAAGGNASLMTIS 1241


>ref|YP_001100402.1| multifunctional: transcriptional repressor of proline utilization;
            proline dehydrogenase; pyrroline-5-carboxylate
            dehydrogenase [Herminiimonas arsenicoxydans]
 emb|CAL62279.1| Bifunctional protein putA: Proline dehydrogenase (Proline oxidase);
            Delta-1-pyrroline-5-carboxylate dehydrogenase (P5C
            dehydrogenase)] [Herminiimonas arsenicoxydans]
          Length = 1224

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/44 (70%), Positives = 38/44 (86%)

Query: 51   EGALVPLILCSEDGAIPLWRLLAERALCVNTTAAGGNASLMTIS 94
            +GA+VP++  +   AIPLWRL+ ERALCVNTTAAGGNASLMTI+
Sbjct: 1180 DGAIVPVVTTNFQQAIPLWRLINERALCVNTTAAGGNASLMTIA 1223


>ref|ZP_08275027.1| Proline dehydrogenase [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF31501.1| Proline dehydrogenase [Oxalobacteraceae bacterium IMCC9480]
          Length = 578

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/48 (66%), Positives = 39/48 (81%)

Query: 48  AEREGALVPLILCSEDGAIPLWRLLAERALCVNTTAAGGNASLMTISV 95
           A R GALVPL+  +   +IPLWRL++ERA+C NTTAAGGNASLMT+ V
Sbjct: 531 AARNGALVPLVETTGLVSIPLWRLVSERAMCSNTTAAGGNASLMTLEV 578